Wall clock time and date at job start Wed Apr 1 2020 03:31:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50701 * 109.46714 * 2 1 4 4 C 1.38550 * 120.00989 * 125.00122 * 3 2 1 5 5 C 1.40075 * 117.81237 * 180.02562 * 4 3 2 6 6 C 1.48144 * 121.14130 * 179.97438 * 5 4 3 7 7 O 1.21519 * 119.99796 * 214.33934 * 6 5 4 8 8 N 1.34775 * 120.00186 * 34.33779 * 6 5 4 9 9 C 1.47663 * 134.45759 * 184.66552 * 8 6 5 10 10 C 1.53509 * 85.98025 * 204.34133 * 9 8 6 11 11 C 1.47670 * 134.45728 * 4.70771 * 8 6 5 12 12 C 1.52673 * 113.56978 * 91.01858 * 10 9 8 13 13 C 1.53337 * 109.11232 * 73.81858 * 12 10 9 14 14 N 1.46873 * 108.76314 * 52.40253 * 13 12 10 15 15 C 1.36939 * 120.46553 * 124.47881 * 14 13 12 16 16 H 1.08002 * 119.99461 * 326.89990 * 15 14 13 17 17 C 1.38812 * 120.00030 * 147.17957 * 15 14 13 18 18 N 1.31620 * 120.00087 * 345.43445 * 17 15 14 19 19 Si 1.86807 * 119.99647 * 165.43674 * 17 15 14 20 20 H 1.48495 * 109.47276 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.46690 * 120.00122 * 19 17 15 22 22 H 1.48500 * 109.46998 * 239.99601 * 19 17 15 23 23 C 1.46885 * 119.07099 * 304.74347 * 14 13 12 24 24 C 1.52672 * 113.56796 * 222.23698 * 10 9 8 25 25 C 1.39757 * 117.71124 * 0.25659 * 5 4 3 26 26 C 1.50700 * 120.17295 * 179.72717 * 25 5 4 27 27 N 1.31902 * 119.65553 * 359.47911 * 25 5 4 28 28 N 1.28275 * 122.32503 * 0.54396 * 27 25 5 29 29 H 1.09004 * 109.47382 * 60.00154 * 1 2 3 30 30 H 1.09004 * 109.47457 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47224 * 299.99833 * 1 2 3 32 32 H 1.08996 * 109.46818 * 240.00205 * 2 1 3 33 33 H 1.08997 * 109.46789 * 120.00147 * 2 1 3 34 34 H 1.07999 * 121.09003 * 0.04299 * 4 3 2 35 35 H 1.08995 * 113.78655 * 90.07799 * 9 8 6 36 36 H 1.09003 * 113.89931 * 318.62099 * 9 8 6 37 37 H 1.09002 * 113.78803 * 41.38353 * 11 8 6 38 38 H 1.09005 * 113.78737 * 269.92680 * 11 8 6 39 39 H 1.09002 * 109.53336 * 313.92259 * 12 10 9 40 40 H 1.09004 * 109.58956 * 193.73875 * 12 10 9 41 41 H 1.09003 * 109.58686 * 292.61408 * 13 12 10 42 42 H 1.09003 * 109.58351 * 172.19058 * 13 12 10 43 43 H 0.97002 * 119.99416 * 180.02562 * 18 17 15 44 44 H 1.08997 * 109.59344 * 175.04499 * 23 14 13 45 45 H 1.09000 * 109.58658 * 295.47902 * 23 14 13 46 46 H 1.09000 * 109.52569 * 46.07169 * 24 10 9 47 47 H 1.08999 * 109.53290 * 166.22413 * 24 10 9 48 48 H 1.08999 * 109.47207 * 84.18405 * 26 25 5 49 49 H 1.09004 * 109.47205 * 204.17666 * 26 25 5 50 50 H 1.08998 * 109.47034 * 324.17944 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.9120 1.8449 0.9828 5 6 3.3490 3.1750 0.9391 6 6 4.2892 3.7062 1.9532 7 8 4.1997 4.8617 2.3185 8 7 5.2438 2.9079 2.4708 9 6 6.2628 3.0657 3.5278 10 6 7.0395 1.9641 2.7931 11 6 5.6904 1.5252 2.2076 12 6 8.0152 2.4986 1.7476 13 6 9.2262 3.1139 2.4591 14 7 9.7675 2.1305 3.4063 15 6 11.0822 1.7532 3.3398 16 1 11.5834 1.7085 2.3842 17 6 11.7689 1.4225 4.5000 18 7 11.2666 1.7386 5.6748 19 14 13.4059 0.5289 4.3938 20 1 13.7486 0.2912 2.9686 21 1 14.4640 1.3577 5.0252 22 1 13.3068 -0.7718 5.1033 23 6 8.8775 1.5531 4.4222 24 6 7.6658 0.9318 3.7275 25 6 2.8629 3.9853 -0.0906 26 6 3.2918 5.4268 -0.1868 27 7 2.0305 3.4805 -0.9806 28 7 1.6341 2.2614 -0.9351 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.2499 1.1718 1.7569 35 1 5.9168 2.7732 4.5192 36 1 6.7610 4.0352 3.5197 37 1 5.7326 1.2708 1.1485 38 1 5.1742 0.7749 2.8067 39 1 7.5215 3.2602 1.1440 40 1 8.3460 1.6824 1.1053 41 1 8.9171 4.0093 2.9985 42 1 9.9890 3.3724 1.7247 43 1 11.7467 1.5078 6.4855 44 1 9.4107 0.7838 4.9806 45 1 8.5432 2.3362 5.1027 46 1 6.9336 0.6248 4.4744 47 1 7.9839 0.0636 3.1505 48 1 4.2439 5.4882 -0.7137 49 1 2.5377 5.9946 -0.7319 50 1 3.4038 5.8401 0.8155 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050602960.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:31:11 Heat of formation + Delta-G solvation = 53.940147 kcal Electronic energy + Delta-G solvation = -30668.618509 eV Core-core repulsion = 26697.140890 eV Total energy + Delta-G solvation = -3971.477619 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.60584 -41.69693 -39.67562 -37.55414 -36.22923 -34.82628 -34.21539 -32.76181 -32.09240 -31.41898 -29.26451 -28.52621 -27.59377 -26.63513 -25.77814 -24.42943 -23.97207 -23.35311 -22.50560 -20.67371 -19.58185 -18.84825 -18.51393 -18.05052 -17.27087 -16.89690 -16.78916 -16.72361 -16.42225 -15.74628 -15.61928 -15.38349 -15.07221 -15.01531 -14.95676 -14.65029 -14.45172 -14.04503 -13.91061 -13.86376 -13.38696 -13.35578 -13.20029 -13.02030 -12.98300 -12.87435 -12.72946 -12.60680 -12.26888 -12.16947 -12.00865 -11.84107 -11.82484 -11.55918 -11.42452 -11.28667 -11.22551 -11.08609 -10.63714 -10.53769 -10.46881 -9.81516 -8.56433 -7.85364 -5.35880 -0.77212 -0.28506 1.45875 1.46809 1.49874 1.53835 1.59256 2.35498 2.52374 2.80259 2.93992 3.21292 3.25143 3.33782 3.41987 3.60513 3.72623 3.84785 3.95189 3.98465 4.09837 4.21235 4.29334 4.37818 4.41992 4.45628 4.53382 4.54300 4.57484 4.59890 4.63053 4.71380 4.76311 4.81006 4.90976 4.94234 5.03299 5.05391 5.07103 5.13969 5.18034 5.19157 5.21899 5.35023 5.37631 5.42648 5.55516 5.69353 5.83144 6.45102 6.50735 6.82279 7.20330 7.52910 7.89867 8.42096 9.19857 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.018764 B = 0.002489 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.862243 B =11246.740322 C =11934.877025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.067 4.067 3 C 0.064 3.936 4 C -0.063 4.063 5 C -0.132 4.132 6 C 0.582 3.418 7 O -0.561 6.561 8 N -0.626 5.626 9 C 0.117 3.883 10 C -0.074 4.074 11 C 0.111 3.889 12 C -0.095 4.095 13 C 0.144 3.856 14 N -0.607 5.607 15 C -0.262 4.262 16 H 0.060 0.940 17 C -0.043 4.043 18 N -0.931 5.931 19 Si 0.962 3.038 20 H -0.268 1.268 21 H -0.296 1.296 22 H -0.287 1.287 23 C 0.178 3.822 24 C -0.110 4.110 25 C 0.102 3.898 26 C -0.117 4.117 27 N -0.266 5.266 28 N -0.247 5.247 29 H 0.049 0.951 30 H 0.084 0.916 31 H 0.047 0.953 32 H 0.100 0.900 33 H 0.115 0.885 34 H 0.187 0.813 35 H 0.103 0.897 36 H 0.061 0.939 37 H 0.098 0.902 38 H 0.128 0.872 39 H 0.060 0.940 40 H 0.069 0.931 41 H 0.007 0.993 42 H 0.047 0.953 43 H 0.250 0.750 44 H 0.048 0.952 45 H -0.002 1.002 46 H 0.086 0.914 47 H 0.066 0.934 48 H 0.088 0.912 49 H 0.090 0.910 50 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.850 -6.027 -9.072 22.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.105 4.105 3 C -0.082 4.082 4 C -0.093 4.093 5 C -0.146 4.146 6 C 0.371 3.629 7 O -0.441 6.441 8 N -0.359 5.359 9 C -0.005 4.005 10 C -0.075 4.075 11 C -0.009 4.009 12 C -0.134 4.134 13 C 0.018 3.982 14 N -0.331 5.331 15 C -0.393 4.393 16 H 0.077 0.923 17 C -0.240 4.240 18 N -0.577 5.577 19 Si 0.790 3.210 20 H -0.192 1.192 21 H -0.223 1.223 22 H -0.214 1.214 23 C 0.052 3.948 24 C -0.149 4.149 25 C -0.043 4.043 26 C -0.175 4.175 27 N -0.107 5.107 28 N -0.089 5.089 29 H 0.068 0.932 30 H 0.103 0.897 31 H 0.067 0.933 32 H 0.118 0.882 33 H 0.133 0.867 34 H 0.204 0.796 35 H 0.121 0.879 36 H 0.080 0.920 37 H 0.116 0.884 38 H 0.146 0.854 39 H 0.079 0.921 40 H 0.088 0.912 41 H 0.025 0.975 42 H 0.066 0.934 43 H 0.059 0.941 44 H 0.067 0.933 45 H 0.016 0.984 46 H 0.105 0.895 47 H 0.085 0.915 48 H 0.106 0.894 49 H 0.109 0.891 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -20.890 -5.044 -10.194 23.785 hybrid contribution 2.083 0.058 1.610 2.634 sum -18.806 -4.986 -8.584 21.266 Atomic orbital electron populations 1.21709 0.93752 1.03225 1.01722 1.20662 0.97177 0.86755 1.05949 1.23425 0.93802 0.99815 0.91138 1.22945 0.93778 0.93915 0.98628 1.20984 1.00212 0.95964 0.97430 1.17711 0.79330 0.84731 0.81088 1.90714 1.72322 1.18098 1.62967 1.50020 1.32177 1.16283 1.37383 1.23370 0.85149 0.99827 0.92135 1.21852 0.93754 0.95622 0.96288 1.23767 0.91022 0.82862 1.03294 1.21574 0.95288 1.00143 0.96403 1.20969 0.94546 0.90714 0.91944 1.44210 1.06529 1.46034 1.36279 1.19443 0.88296 1.39710 0.91852 0.92259 1.25849 1.00775 1.01879 0.95455 1.70158 1.40689 1.49596 0.97250 0.85295 0.79955 0.77910 0.77792 1.19224 1.22299 1.21388 1.20474 0.89394 0.95243 0.89683 1.21835 0.97702 0.97154 0.98238 1.23217 0.91994 0.99079 0.90008 1.21023 1.02645 0.88199 1.05610 1.73036 1.09822 1.06291 1.21565 1.72667 1.17967 0.97609 1.20639 0.93159 0.89732 0.93346 0.88163 0.86680 0.79562 0.87902 0.91999 0.88407 0.85397 0.92088 0.91203 0.97543 0.93441 0.94111 0.93325 0.98438 0.89549 0.91502 0.89373 0.89074 0.88449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.77 71.98 0.70 -0.78 16 2 C -0.07 -0.61 6.35 29.85 0.19 -0.42 16 3 C 0.06 1.07 6.25 42.63 0.27 1.34 16 4 C -0.06 -1.01 8.73 22.79 0.20 -0.81 16 5 C -0.13 -2.96 5.76 -19.83 -0.11 -3.08 16 6 C 0.58 15.19 7.52 86.88 0.65 15.85 16 7 O -0.56 -18.55 14.92 -3.77 -0.06 -18.61 16 8 N -0.63 -14.11 3.42 -845.59 -2.89 -17.00 16 9 C 0.12 3.02 7.63 86.32 0.66 3.68 16 10 C -0.07 -1.83 0.77 -52.03 -0.04 -1.87 16 11 C 0.11 1.80 5.89 86.31 0.51 2.31 16 12 C -0.10 -2.79 5.22 30.60 0.16 -2.63 16 13 C 0.14 5.65 6.38 86.42 0.55 6.20 16 14 N -0.61 -28.37 2.94 -699.68 -2.06 -30.43 16 15 C -0.26 -13.81 9.52 84.03 0.80 -13.01 16 16 H 0.06 3.09 7.87 -2.91 -0.02 3.07 16 17 C -0.04 -2.34 4.93 84.86 0.42 -1.92 16 18 N -0.93 -53.06 11.38 21.65 0.25 -52.81 16 19 Si 0.96 43.29 29.58 68.60 2.03 45.32 16 20 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 21 H -0.30 -13.51 7.11 99.48 0.71 -12.80 16 22 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 23 C 0.18 7.55 5.16 86.26 0.44 8.00 16 24 C -0.11 -3.13 5.24 30.44 0.16 -2.97 16 25 C 0.10 2.55 6.90 42.92 0.30 2.85 16 26 C -0.12 -2.66 9.63 71.24 0.69 -1.98 16 27 N -0.27 -7.03 11.42 -46.94 -0.54 -7.57 16 28 N -0.25 -5.84 11.04 -47.68 -0.53 -6.37 16 29 H 0.05 0.69 7.96 -2.39 -0.02 0.67 16 30 H 0.08 0.52 8.14 -2.38 -0.02 0.50 16 31 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.11 0.38 7.92 -2.39 -0.02 0.37 16 34 H 0.19 1.61 6.55 -2.91 -0.02 1.59 16 35 H 0.10 2.38 8.07 -2.39 -0.02 2.37 16 36 H 0.06 1.93 7.41 -2.39 -0.02 1.91 16 37 H 0.10 1.35 8.09 -2.39 -0.02 1.33 16 38 H 0.13 1.19 7.85 -2.38 -0.02 1.17 16 39 H 0.06 1.69 8.01 -2.39 -0.02 1.67 16 40 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 41 H 0.01 0.27 7.49 -2.39 -0.02 0.26 16 42 H 0.05 1.89 7.92 -2.39 -0.02 1.88 16 43 H 0.25 13.80 8.31 -92.71 -0.77 13.03 16 44 H 0.05 2.41 6.25 -2.39 -0.01 2.39 16 45 H 0.00 -0.11 8.08 -2.39 -0.02 -0.13 16 46 H 0.09 1.94 8.12 -2.39 -0.02 1.92 16 47 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 48 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 49 H 0.09 1.82 8.14 -2.38 -0.02 1.80 16 50 H 0.10 2.54 5.44 -2.39 -0.01 2.53 16 Total: -1.00 -70.74 396.01 3.69 -67.05 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: 0.94 Total: 9.65 kcal Atomic # 6 Polarization: 4.22 SS G_CDS: 6.54 Total: 10.76 kcal Atomic # 7 Polarization: -108.41 SS G_CDS: -5.76 Total: -114.17 kcal Atomic # 8 Polarization: -18.55 SS G_CDS: -0.06 Total: -18.61 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Total: -70.74 3.69 -67.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050602960.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.993 kcal (2) G-P(sol) polarization free energy of solvation -70.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.053 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds