Wall clock time and date at job start Wed Apr 1 2020 03:50:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47041 * 2 1 4 4 C 1.50699 * 109.46893 * 240.00009 * 2 1 3 5 5 N 1.32154 * 120.54184 * 52.12482 * 4 2 1 6 6 C 1.31861 * 120.96950 * 179.76044 * 5 4 2 7 7 N 1.31881 * 122.09160 * 0.53179 * 6 5 4 8 8 C 1.32134 * 120.96961 * 359.73721 * 7 6 5 9 9 C 1.39929 * 120.53417 * 232.40338 * 4 2 1 10 10 C 1.47836 * 120.94352 * 0.02562 * 9 4 2 11 11 O 1.21556 * 119.99321 * 321.51469 * 10 9 4 12 12 N 1.34769 * 120.00727 * 141.51327 * 10 9 4 13 13 C 1.47177 * 135.99598 * 4.35303 * 12 10 9 14 14 C 1.52642 * 87.96704 * 206.71842 * 13 12 10 15 15 C 1.47155 * 136.00783 * 184.71757 * 12 10 9 16 16 C 1.52552 * 113.89637 * 88.17847 * 14 13 12 17 17 C 1.53354 * 109.13201 * 190.30423 * 16 14 13 18 18 N 1.46891 * 108.74485 * 307.75549 * 17 16 14 19 19 C 1.36935 * 120.46022 * 235.60188 * 18 17 16 20 20 H 1.07998 * 120.00315 * 32.24537 * 19 18 17 21 21 C 1.38816 * 120.00203 * 212.25220 * 19 18 17 22 22 N 1.31619 * 119.99532 * 13.49051 * 21 19 18 23 23 Si 1.86793 * 120.00100 * 193.49496 * 21 19 18 24 24 H 1.48498 * 109.47372 * 59.99672 * 23 21 19 25 25 H 1.48500 * 109.47118 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47113 * 299.99410 * 23 21 19 27 27 C 1.46888 * 119.07596 * 55.62798 * 18 17 16 28 28 C 1.52557 * 114.25822 * 220.76485 * 14 13 12 29 29 H 1.09000 * 109.47051 * 60.00228 * 1 2 3 30 30 H 1.08994 * 109.47162 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47188 * 300.00104 * 1 2 3 32 32 H 1.09000 * 109.47051 * 119.99772 * 2 1 3 33 33 H 1.08997 * 109.47215 * 59.99913 * 3 2 1 34 34 H 1.09005 * 109.46982 * 180.02562 * 3 2 1 35 35 H 1.09000 * 109.47012 * 299.99796 * 3 2 1 36 36 H 1.08000 * 118.95147 * 180.27203 * 6 5 4 37 37 H 1.08000 * 120.53662 * 179.97438 * 8 7 6 38 38 H 1.08994 * 113.48781 * 321.41665 * 13 12 10 39 39 H 1.09005 * 113.48804 * 91.91562 * 13 12 10 40 40 H 1.09002 * 113.49307 * 268.09115 * 15 12 10 41 41 H 1.09005 * 113.48333 * 38.52764 * 15 12 10 42 42 H 1.09002 * 109.52573 * 310.19629 * 16 14 13 43 43 H 1.08994 * 109.52867 * 70.40388 * 16 14 13 44 44 H 1.08998 * 109.59549 * 187.97314 * 17 16 14 45 45 H 1.08999 * 109.58910 * 67.52907 * 17 16 14 46 46 H 0.97008 * 119.99946 * 180.02562 * 22 21 19 47 47 H 1.09005 * 109.59399 * 184.58389 * 27 18 17 48 48 H 1.08998 * 109.59365 * 64.14049 * 27 18 17 49 49 H 1.09009 * 109.52883 * 289.75594 * 28 14 13 50 50 H 1.09003 * 109.52918 * 49.89308 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 7 1.5973 -0.3654 -2.4297 6 6 2.0346 -0.9781 -3.5123 7 7 2.9105 -1.9623 -3.4549 8 6 3.3944 -2.3752 -2.2967 9 6 2.9625 -1.7500 -1.1212 10 6 3.4740 -2.1768 0.1985 11 8 3.7058 -1.3484 1.0573 12 7 3.6832 -3.4843 0.4496 13 6 3.6044 -4.7360 -0.3206 14 6 3.3297 -5.4633 0.9930 15 6 4.0843 -4.2875 1.6156 16 6 1.8524 -5.5236 1.3687 17 6 1.7202 -6.0377 2.8075 18 7 2.4742 -7.2923 2.9316 19 6 1.8587 -8.4307 3.3791 20 1 0.8149 -8.6018 3.1608 21 6 2.5763 -9.3649 4.1134 22 7 3.7551 -9.0495 4.6067 23 14 1.8690 -11.0696 4.4015 24 1 1.6412 -11.7383 3.0953 25 1 2.8237 -11.8718 5.2079 26 1 0.5801 -10.9542 5.1299 27 6 3.8976 -7.3084 2.5695 28 6 4.0454 -6.8037 1.1289 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.8934 -0.5138 0.8900 33 1 1.6767 1.9563 0.8899 34 1 3.1301 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6604 -0.6668 -4.4764 37 1 4.1111 -3.1821 -2.2577 38 1 2.7655 -4.7662 -1.0157 39 1 4.5485 -5.0202 -0.7854 40 1 5.1603 -4.4485 1.6829 41 1 3.6507 -3.9390 2.5530 42 1 1.4171 -4.5269 1.2966 43 1 1.3314 -6.1997 0.6909 44 1 0.6699 -6.2183 3.0361 45 1 2.1250 -5.2982 3.4984 46 1 4.2568 -9.7024 5.1195 47 1 4.2816 -8.3261 2.6414 48 1 4.4538 -6.6572 3.2438 49 1 3.6014 -7.5251 0.4427 50 1 5.1020 -6.6782 0.8922 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050755582.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:50:02 Heat of formation + Delta-G solvation = 67.915797 kcal Electronic energy + Delta-G solvation = -31042.415783 eV Core-core repulsion = 27071.544193 eV Total energy + Delta-G solvation = -3970.871589 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.72480 -40.68252 -38.44960 -36.36978 -35.85938 -33.44078 -32.63158 -31.94568 -30.63452 -29.80800 -27.45098 -27.31560 -26.36736 -25.36439 -24.77058 -24.07654 -22.44895 -21.14759 -21.05657 -19.80349 -18.28970 -18.06930 -17.34704 -16.98068 -16.50631 -16.20568 -15.61655 -15.13255 -14.95076 -14.87614 -14.30144 -14.14553 -13.92322 -13.76905 -13.68266 -13.57777 -13.31277 -13.17653 -12.76043 -12.41667 -12.35103 -11.99683 -11.96817 -11.76617 -11.65553 -11.52079 -11.49236 -11.16857 -11.00497 -10.83207 -10.77343 -10.55597 -10.36908 -10.19789 -10.00946 -9.92283 -9.82037 -9.69964 -9.57731 -9.45641 -8.72077 -8.51096 -6.65605 -5.83680 -3.31402 0.22284 0.68676 2.52750 2.65855 3.35022 3.40951 3.41560 3.41738 3.64811 3.74514 3.97828 4.13122 4.44127 4.46808 4.54075 4.81801 4.86686 4.94879 4.96705 5.09839 5.13177 5.32042 5.36453 5.38745 5.44701 5.49556 5.49938 5.57503 5.65364 5.66305 5.70383 5.81502 5.83102 5.95660 5.98977 5.99781 6.05672 6.16399 6.19797 6.37735 6.50000 6.52869 6.56853 6.58760 6.75435 6.90030 7.26539 7.58149 7.61558 7.67737 7.75475 7.94506 8.43769 9.17831 9.79168 10.37355 11.24401 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.019506 B = 0.002589 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.080918 B =10811.347456 C =11113.935431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.063 4.063 3 C -0.132 4.132 4 C 0.238 3.762 5 N -0.516 5.516 6 C 0.310 3.690 7 N -0.525 5.525 8 C 0.184 3.816 9 C -0.229 4.229 10 C 0.593 3.407 11 O -0.527 6.527 12 N -0.634 5.634 13 C 0.093 3.907 14 C -0.073 4.073 15 C 0.117 3.883 16 C -0.107 4.107 17 C 0.147 3.853 18 N -0.590 5.590 19 C -0.257 4.257 20 H 0.063 0.937 21 C 0.007 3.993 22 N -0.902 5.902 23 Si 0.903 3.097 24 H -0.283 1.283 25 H -0.290 1.290 26 H -0.282 1.282 27 C 0.173 3.827 28 C -0.125 4.125 29 H 0.066 0.934 30 H 0.052 0.948 31 H 0.064 0.936 32 H 0.112 0.888 33 H 0.065 0.935 34 H 0.056 0.944 35 H 0.059 0.941 36 H 0.201 0.799 37 H 0.171 0.829 38 H 0.074 0.926 39 H 0.089 0.911 40 H 0.087 0.913 41 H 0.082 0.918 42 H 0.050 0.950 43 H 0.064 0.936 44 H 0.055 0.945 45 H 0.019 0.981 46 H 0.255 0.745 47 H 0.088 0.912 48 H 0.020 0.980 49 H 0.063 0.937 50 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.203 15.183 -14.194 20.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.082 4.082 3 C -0.189 4.189 4 C 0.091 3.909 5 N -0.229 5.229 6 C 0.023 3.977 7 N -0.239 5.239 8 C 0.017 3.983 9 C -0.236 4.236 10 C 0.381 3.619 11 O -0.405 6.405 12 N -0.368 5.368 13 C -0.029 4.029 14 C -0.074 4.074 15 C -0.004 4.004 16 C -0.146 4.146 17 C 0.021 3.979 18 N -0.312 5.312 19 C -0.386 4.386 20 H 0.080 0.920 21 C -0.192 4.192 22 N -0.546 5.546 23 Si 0.733 3.267 24 H -0.210 1.210 25 H -0.216 1.216 26 H -0.209 1.209 27 C 0.047 3.953 28 C -0.165 4.165 29 H 0.085 0.915 30 H 0.071 0.929 31 H 0.083 0.917 32 H 0.129 0.871 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.217 0.783 37 H 0.188 0.812 38 H 0.093 0.907 39 H 0.107 0.893 40 H 0.105 0.895 41 H 0.101 0.899 42 H 0.069 0.931 43 H 0.083 0.917 44 H 0.074 0.926 45 H 0.036 0.964 46 H 0.065 0.935 47 H 0.106 0.894 48 H 0.038 0.962 49 H 0.082 0.918 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.360 16.032 -14.555 21.696 hybrid contribution 0.171 -1.237 0.701 1.432 sum -1.189 14.796 -13.854 20.304 Atomic orbital electron populations 1.21788 0.93164 1.02086 1.02734 1.20534 0.96801 0.97241 0.93663 1.21671 1.01299 0.93648 1.02316 1.21869 0.87057 0.88020 0.93972 1.68300 1.26622 1.29444 0.98568 1.25204 0.88044 0.86821 0.97606 1.68452 1.12218 1.14743 1.28477 1.23496 0.93645 0.94648 0.86499 1.21602 1.04044 1.01702 0.96271 1.17212 0.78069 0.80471 0.86114 1.90775 1.52325 1.50377 1.47066 1.49586 1.66464 1.03927 1.16794 1.23373 1.01674 0.80868 0.97034 1.21638 0.97512 0.94851 0.93366 1.23151 0.99951 0.86918 0.90415 1.21728 0.92326 0.99804 1.00748 1.20887 0.96292 0.88982 0.91756 1.43962 1.06725 1.05042 1.75477 1.19109 0.95788 0.96318 1.27432 0.91975 1.25154 0.97545 0.99705 0.96821 1.69981 1.13777 1.33950 1.36884 0.86373 0.78257 0.84290 0.77820 1.20966 1.21610 1.20851 1.20752 0.85189 1.01277 0.88035 1.22095 0.97628 0.93964 1.02802 0.91501 0.92914 0.91663 0.87063 0.91583 0.92485 0.92147 0.78280 0.81213 0.90724 0.89274 0.89490 0.89944 0.93136 0.91689 0.92601 0.96351 0.93504 0.89415 0.96233 0.91795 0.92714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 9.04 37.16 0.34 -1.05 16 2 C -0.06 -0.73 2.77 -91.77 -0.25 -0.98 16 3 C -0.13 -1.34 9.17 37.16 0.34 -1.00 16 4 C 0.24 2.88 5.53 -81.82 -0.45 2.43 16 5 N -0.52 -5.73 9.94 -10.48 -0.10 -5.84 16 6 C 0.31 2.99 12.27 -92.02 -1.13 1.86 16 7 N -0.53 -5.62 10.42 -14.24 -0.15 -5.77 16 8 C 0.18 1.98 10.11 -16.77 -0.17 1.81 16 9 C -0.23 -2.83 5.76 -104.69 -0.60 -3.44 16 10 C 0.59 8.40 7.23 -12.34 -0.09 8.31 16 11 O -0.53 -8.88 15.36 5.32 0.08 -8.80 16 12 N -0.63 -8.34 3.45 -186.45 -0.64 -8.98 16 13 C 0.09 1.05 5.76 -8.37 -0.05 1.00 16 14 C -0.07 -1.04 0.83 -155.17 -0.13 -1.16 16 15 C 0.12 1.66 7.56 -8.22 -0.06 1.60 16 16 C -0.11 -1.69 5.25 -26.78 -0.14 -1.83 16 17 C 0.15 2.91 6.41 -3.65 -0.02 2.88 16 18 N -0.59 -13.79 2.94 -172.18 -0.51 -14.30 16 19 C -0.26 -6.73 9.54 -15.06 -0.14 -6.87 16 20 H 0.06 1.61 7.86 -52.49 -0.41 1.20 16 21 C 0.01 0.18 4.97 -17.43 -0.09 0.10 16 22 N -0.90 -25.15 11.24 55.49 0.62 -24.53 16 23 Si 0.90 20.98 29.57 -169.99 -5.03 15.96 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 26 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 27 C 0.17 3.74 5.22 -3.65 -0.02 3.72 16 28 C -0.13 -2.01 5.31 -26.77 -0.14 -2.15 16 29 H 0.07 0.64 7.94 -51.93 -0.41 0.23 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.11 1.50 5.28 -51.93 -0.27 1.23 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.20 1.18 8.06 -52.49 -0.42 0.76 16 37 H 0.17 1.49 6.84 -52.49 -0.36 1.13 16 38 H 0.07 0.79 7.85 -51.93 -0.41 0.38 16 39 H 0.09 0.82 8.09 -51.93 -0.42 0.40 16 40 H 0.09 1.14 8.06 -51.93 -0.42 0.73 16 41 H 0.08 1.30 7.53 -51.93 -0.39 0.91 16 42 H 0.05 0.76 7.95 -51.93 -0.41 0.35 16 43 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.06 1.10 7.92 -51.93 -0.41 0.69 16 45 H 0.02 0.38 7.60 -51.93 -0.39 -0.02 16 46 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 47 H 0.09 2.16 6.14 -51.93 -0.32 1.85 16 48 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 49 H 0.06 1.05 8.14 -51.92 -0.42 0.63 16 50 H 0.05 0.76 8.10 -51.93 -0.42 0.34 16 LS Contribution 395.65 15.07 5.96 5.96 Total: -1.00 -30.33 395.65 -10.57 -40.91 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -7.99 Total: 0.17 kcal Atomic # 6 Polarization: 8.03 SS G_CDS: -2.82 Total: 5.22 kcal Atomic # 7 Polarization: -58.63 SS G_CDS: -0.78 Total: -59.41 kcal Atomic # 8 Polarization: -8.88 SS G_CDS: 0.08 Total: -8.80 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.03 Total: 15.96 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -30.33 -10.57 -40.91 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050755582.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.822 kcal (2) G-P(sol) polarization free energy of solvation -30.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds