Wall clock time and date at job start Wed Apr 1 2020 03:50:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47041 * 2 1 4 4 C 1.50699 * 109.46893 * 240.00009 * 2 1 3 5 5 N 1.32154 * 120.54184 * 52.12482 * 4 2 1 6 6 C 1.31861 * 120.96950 * 179.76044 * 5 4 2 7 7 N 1.31881 * 122.09160 * 0.53179 * 6 5 4 8 8 C 1.32134 * 120.96961 * 359.73721 * 7 6 5 9 9 C 1.39929 * 120.53417 * 232.40338 * 4 2 1 10 10 C 1.47836 * 120.94352 * 0.02562 * 9 4 2 11 11 O 1.21556 * 119.99321 * 321.51469 * 10 9 4 12 12 N 1.34769 * 120.00727 * 141.51327 * 10 9 4 13 13 C 1.47177 * 135.99598 * 4.35303 * 12 10 9 14 14 C 1.52642 * 87.96704 * 206.71842 * 13 12 10 15 15 C 1.47155 * 136.00783 * 184.71757 * 12 10 9 16 16 C 1.52552 * 113.89637 * 88.17847 * 14 13 12 17 17 C 1.53354 * 109.13201 * 190.30423 * 16 14 13 18 18 N 1.46891 * 108.74485 * 307.75549 * 17 16 14 19 19 C 1.36935 * 120.46022 * 235.60188 * 18 17 16 20 20 H 1.07998 * 120.00315 * 32.24537 * 19 18 17 21 21 C 1.38816 * 120.00203 * 212.25220 * 19 18 17 22 22 N 1.31619 * 119.99532 * 13.49051 * 21 19 18 23 23 Si 1.86793 * 120.00100 * 193.49496 * 21 19 18 24 24 H 1.48498 * 109.47372 * 59.99672 * 23 21 19 25 25 H 1.48500 * 109.47118 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47113 * 299.99410 * 23 21 19 27 27 C 1.46888 * 119.07596 * 55.62798 * 18 17 16 28 28 C 1.52557 * 114.25822 * 220.76485 * 14 13 12 29 29 H 1.09000 * 109.47051 * 60.00228 * 1 2 3 30 30 H 1.08994 * 109.47162 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47188 * 300.00104 * 1 2 3 32 32 H 1.09000 * 109.47051 * 119.99772 * 2 1 3 33 33 H 1.08997 * 109.47215 * 59.99913 * 3 2 1 34 34 H 1.09005 * 109.46982 * 180.02562 * 3 2 1 35 35 H 1.09000 * 109.47012 * 299.99796 * 3 2 1 36 36 H 1.08000 * 118.95147 * 180.27203 * 6 5 4 37 37 H 1.08000 * 120.53662 * 179.97438 * 8 7 6 38 38 H 1.08994 * 113.48781 * 321.41665 * 13 12 10 39 39 H 1.09005 * 113.48804 * 91.91562 * 13 12 10 40 40 H 1.09002 * 113.49307 * 268.09115 * 15 12 10 41 41 H 1.09005 * 113.48333 * 38.52764 * 15 12 10 42 42 H 1.09002 * 109.52573 * 310.19629 * 16 14 13 43 43 H 1.08994 * 109.52867 * 70.40388 * 16 14 13 44 44 H 1.08998 * 109.59549 * 187.97314 * 17 16 14 45 45 H 1.08999 * 109.58910 * 67.52907 * 17 16 14 46 46 H 0.97008 * 119.99946 * 180.02562 * 22 21 19 47 47 H 1.09005 * 109.59399 * 184.58389 * 27 18 17 48 48 H 1.08998 * 109.59365 * 64.14049 * 27 18 17 49 49 H 1.09009 * 109.52883 * 289.75594 * 28 14 13 50 50 H 1.09003 * 109.52918 * 49.89308 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 7 1.5973 -0.3654 -2.4297 6 6 2.0346 -0.9781 -3.5123 7 7 2.9105 -1.9623 -3.4549 8 6 3.3944 -2.3752 -2.2967 9 6 2.9625 -1.7500 -1.1212 10 6 3.4740 -2.1768 0.1985 11 8 3.7058 -1.3484 1.0573 12 7 3.6832 -3.4843 0.4496 13 6 3.6044 -4.7360 -0.3206 14 6 3.3297 -5.4633 0.9930 15 6 4.0843 -4.2875 1.6156 16 6 1.8524 -5.5236 1.3687 17 6 1.7202 -6.0377 2.8075 18 7 2.4742 -7.2923 2.9316 19 6 1.8587 -8.4307 3.3791 20 1 0.8149 -8.6018 3.1608 21 6 2.5763 -9.3649 4.1134 22 7 3.7551 -9.0495 4.6067 23 14 1.8690 -11.0696 4.4015 24 1 1.6412 -11.7383 3.0953 25 1 2.8237 -11.8718 5.2079 26 1 0.5801 -10.9542 5.1299 27 6 3.8976 -7.3084 2.5695 28 6 4.0454 -6.8037 1.1289 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.8934 -0.5138 0.8900 33 1 1.6767 1.9563 0.8899 34 1 3.1301 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6604 -0.6668 -4.4764 37 1 4.1111 -3.1821 -2.2577 38 1 2.7655 -4.7662 -1.0157 39 1 4.5485 -5.0202 -0.7854 40 1 5.1603 -4.4485 1.6829 41 1 3.6507 -3.9390 2.5530 42 1 1.4171 -4.5269 1.2966 43 1 1.3314 -6.1997 0.6909 44 1 0.6699 -6.2183 3.0361 45 1 2.1250 -5.2982 3.4984 46 1 4.2568 -9.7024 5.1195 47 1 4.2816 -8.3261 2.6414 48 1 4.4538 -6.6572 3.2438 49 1 3.6014 -7.5251 0.4427 50 1 5.1020 -6.6782 0.8922 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050755582.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:50:00 Heat of formation + Delta-G solvation = 51.404702 kcal Electronic energy + Delta-G solvation = -31043.131758 eV Core-core repulsion = 27071.544193 eV Total energy + Delta-G solvation = -3971.587564 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.62660 -41.74469 -39.59247 -37.66033 -36.99991 -34.45779 -34.08779 -32.99577 -32.07710 -31.37296 -28.80297 -28.11496 -27.43486 -26.35283 -25.89776 -25.40904 -23.96206 -22.66356 -21.91218 -20.94913 -19.57198 -19.08917 -18.43334 -18.11062 -17.74749 -17.27663 -16.85534 -16.69014 -16.02525 -15.79392 -15.63694 -15.34581 -15.09103 -15.07295 -14.87764 -14.73132 -14.51714 -14.11355 -13.99180 -13.94649 -13.37447 -13.11312 -13.07370 -12.99207 -12.88196 -12.73945 -12.55880 -12.55308 -12.35002 -12.30650 -12.08049 -11.93501 -11.82445 -11.65005 -11.31413 -11.29010 -11.18232 -10.82562 -10.73433 -10.48838 -10.39046 -9.78508 -8.57234 -7.84447 -5.34914 -0.60812 -0.13819 1.49337 1.50073 1.50305 1.57155 1.64040 2.52976 2.59966 2.85369 3.00709 3.16314 3.18046 3.28413 3.40451 3.67146 3.72202 3.83755 3.98436 4.01844 4.08587 4.12353 4.23057 4.37519 4.39281 4.45499 4.54041 4.60423 4.61491 4.70213 4.73757 4.74116 4.80173 4.85799 4.88727 4.93925 5.03791 5.04483 5.13197 5.16919 5.18866 5.24648 5.34648 5.34855 5.37055 5.56297 5.68666 5.74837 5.84140 6.45095 6.57415 6.86838 6.90035 7.20388 7.90053 8.42067 9.20458 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.019506 B = 0.002589 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.080918 B =10811.347456 C =11113.935431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.066 4.066 3 C -0.125 4.125 4 C 0.230 3.770 5 N -0.524 5.524 6 C 0.314 3.686 7 N -0.532 5.532 8 C 0.192 3.808 9 C -0.246 4.246 10 C 0.594 3.406 11 O -0.564 6.564 12 N -0.632 5.632 13 C 0.110 3.890 14 C -0.076 4.076 15 C 0.115 3.885 16 C -0.092 4.092 17 C 0.145 3.855 18 N -0.607 5.607 19 C -0.265 4.265 20 H 0.061 0.939 21 C -0.044 4.044 22 N -0.932 5.932 23 Si 0.964 3.036 24 H -0.276 1.276 25 H -0.295 1.295 26 H -0.279 1.279 27 C 0.178 3.822 28 C -0.108 4.108 29 H 0.072 0.928 30 H 0.044 0.956 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.076 0.924 34 H 0.041 0.959 35 H 0.067 0.933 36 H 0.236 0.764 37 H 0.192 0.808 38 H 0.091 0.909 39 H 0.124 0.876 40 H 0.101 0.899 41 H 0.057 0.943 42 H 0.060 0.940 43 H 0.068 0.932 44 H 0.048 0.952 45 H 0.007 0.993 46 H 0.250 0.750 47 H 0.052 0.948 48 H -0.003 1.003 49 H 0.065 0.935 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.597 15.595 -17.241 23.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.085 4.085 3 C -0.183 4.183 4 C 0.083 3.917 5 N -0.237 5.237 6 C 0.028 3.972 7 N -0.246 5.246 8 C 0.025 3.975 9 C -0.254 4.254 10 C 0.383 3.617 11 O -0.444 6.444 12 N -0.365 5.365 13 C -0.012 4.012 14 C -0.077 4.077 15 C -0.008 4.008 16 C -0.131 4.131 17 C 0.019 3.981 18 N -0.331 5.331 19 C -0.396 4.396 20 H 0.079 0.921 21 C -0.240 4.240 22 N -0.578 5.578 23 Si 0.792 3.208 24 H -0.201 1.201 25 H -0.221 1.221 26 H -0.205 1.205 27 C 0.052 3.948 28 C -0.147 4.147 29 H 0.091 0.909 30 H 0.063 0.937 31 H 0.094 0.906 32 H 0.105 0.895 33 H 0.095 0.905 34 H 0.060 0.940 35 H 0.086 0.914 36 H 0.252 0.748 37 H 0.209 0.791 38 H 0.109 0.891 39 H 0.142 0.858 40 H 0.119 0.881 41 H 0.075 0.925 42 H 0.078 0.922 43 H 0.087 0.913 44 H 0.067 0.933 45 H 0.024 0.976 46 H 0.059 0.941 47 H 0.071 0.929 48 H 0.016 0.984 49 H 0.084 0.916 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.773 16.451 -17.640 24.186 hybrid contribution 0.257 -1.306 1.679 2.142 sum -1.516 15.145 -15.962 22.056 Atomic orbital electron populations 1.21738 0.92012 1.01810 1.03519 1.20502 0.97720 0.97527 0.92785 1.21623 1.00276 0.93183 1.03223 1.21978 0.87162 0.88011 0.94544 1.68370 1.27008 1.29855 0.98487 1.25973 0.86955 0.85820 0.98475 1.68568 1.12636 1.15212 1.28148 1.23812 0.93263 0.94556 0.85827 1.21485 1.05255 1.02850 0.95797 1.17470 0.77492 0.80276 0.86456 1.90757 1.53847 1.51393 1.48413 1.49566 1.66028 1.04215 1.16719 1.23408 1.04073 0.78415 0.95279 1.21495 0.96007 0.94035 0.96125 1.23135 1.00602 0.87080 0.89940 1.21509 0.93965 0.99981 0.97665 1.20962 0.95287 0.87467 0.94355 1.44229 1.07529 1.05522 1.75810 1.19417 0.95941 0.97367 1.26835 0.92120 1.25849 0.98043 1.02988 0.97141 1.70139 1.14982 1.34704 1.37971 0.85400 0.77353 0.80265 0.77739 1.20140 1.22103 1.20518 1.20594 0.83890 0.99025 0.91284 1.21848 0.99865 0.94612 0.98417 0.90943 0.93670 0.90607 0.89453 0.90493 0.93963 0.91366 0.74781 0.79098 0.89086 0.85841 0.88147 0.92456 0.92159 0.91302 0.93325 0.97553 0.94090 0.92911 0.98443 0.91603 0.89690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.50 9.04 71.98 0.65 -1.85 16 2 C -0.07 -1.49 2.77 -11.54 -0.03 -1.52 16 3 C -0.13 -2.49 9.17 71.98 0.66 -1.83 16 4 C 0.23 5.27 5.53 42.92 0.24 5.50 16 5 N -0.52 -10.47 9.94 -187.07 -1.86 -12.33 16 6 C 0.31 5.07 12.27 180.84 2.22 7.29 16 7 N -0.53 -9.62 10.42 -198.97 -2.07 -11.69 16 8 C 0.19 3.55 10.11 85.07 0.86 4.41 16 9 C -0.25 -5.68 5.76 -19.91 -0.11 -5.80 16 10 C 0.59 16.24 7.23 86.78 0.63 16.87 16 11 O -0.56 -19.22 15.36 -3.89 -0.06 -19.28 16 12 N -0.63 -15.42 3.45 -862.10 -2.98 -18.40 16 13 C 0.11 2.05 5.76 83.21 0.48 2.53 16 14 C -0.08 -2.01 0.83 -52.61 -0.04 -2.05 16 15 C 0.11 3.13 7.56 83.32 0.63 3.76 16 16 C -0.09 -2.82 5.25 30.56 0.16 -2.66 16 17 C 0.14 5.82 6.41 86.42 0.55 6.37 16 18 N -0.61 -28.99 2.94 -698.65 -2.06 -31.05 16 19 C -0.27 -14.14 9.54 84.03 0.80 -13.34 16 20 H 0.06 3.18 7.86 -2.91 -0.02 3.16 16 21 C -0.04 -2.40 4.97 84.86 0.42 -1.98 16 22 N -0.93 -53.63 11.24 21.65 0.24 -53.38 16 23 Si 0.96 43.73 29.57 68.60 2.03 45.76 16 24 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 25 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 26 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 27 C 0.18 7.79 5.22 86.42 0.45 8.24 16 28 C -0.11 -3.27 5.31 30.57 0.16 -3.11 16 29 H 0.07 1.27 7.94 -2.39 -0.02 1.25 16 30 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.09 2.42 5.28 -2.39 -0.01 2.41 16 33 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.04 0.95 8.14 -2.38 -0.02 0.93 16 35 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.24 1.84 8.06 -2.91 -0.02 1.82 16 37 H 0.19 2.55 6.84 -2.91 -0.02 2.53 16 38 H 0.09 1.50 7.85 -2.39 -0.02 1.48 16 39 H 0.12 1.59 8.09 -2.38 -0.02 1.57 16 40 H 0.10 2.48 8.06 -2.39 -0.02 2.46 16 41 H 0.06 1.86 7.53 -2.38 -0.02 1.84 16 42 H 0.06 1.74 7.95 -2.39 -0.02 1.72 16 43 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 44 H 0.05 1.97 7.92 -2.39 -0.02 1.95 16 45 H 0.01 0.27 7.60 -2.39 -0.02 0.26 16 46 H 0.25 14.01 8.31 -92.70 -0.77 13.24 16 47 H 0.05 2.68 6.14 -2.38 -0.01 2.66 16 48 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 49 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 50 H 0.08 2.09 8.10 -2.39 -0.02 2.07 16 Total: -1.00 -68.40 395.65 2.91 -65.49 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: 0.93 Total: 14.03 kcal Atomic # 6 Polarization: 12.11 SS G_CDS: 8.73 Total: 20.84 kcal Atomic # 7 Polarization: -118.13 SS G_CDS: -8.72 Total: -126.85 kcal Atomic # 8 Polarization: -19.22 SS G_CDS: -0.06 Total: -19.28 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -68.40 2.91 -65.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050755582.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.899 kcal (2) G-P(sol) polarization free energy of solvation -68.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds