Wall clock time and date at job start Wed Apr 1 2020 03:04:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.31884 * 118.95316 * 2 1 4 4 C 1.32143 * 120.96399 * 179.97438 * 3 2 1 5 5 C 1.39965 * 118.92134 * 359.75074 * 4 3 2 6 6 C 1.47834 * 120.93565 * 180.27311 * 5 4 3 7 7 O 1.21555 * 119.99740 * 181.50230 * 6 5 4 8 8 N 1.34772 * 120.00112 * 1.50186 * 6 5 4 9 9 C 1.46504 * 119.99995 * 180.02562 * 8 6 5 10 10 H 1.08994 * 109.20604 * 35.63379 * 9 8 6 11 11 C 1.50127 * 109.21178 * 155.00145 * 9 8 6 12 12 C 1.52525 * 105.41736 * 218.02481 * 11 9 8 13 13 C 1.46241 * 114.27293 * 270.58984 * 12 11 9 14 14 N 1.50165 * 107.53186 * 58.41358 * 13 12 11 15 15 C 1.36940 * 120.54324 * 109.56464 * 14 13 12 16 16 H 1.07996 * 119.99876 * 157.56932 * 15 14 13 17 17 C 1.38812 * 119.99708 * 337.56917 * 15 14 13 18 18 N 1.31624 * 120.00001 * 338.52099 * 17 15 14 19 19 Si 1.86794 * 119.99842 * 158.51838 * 17 15 14 20 20 H 1.48500 * 109.47495 * 0.02562 * 19 17 15 21 21 H 1.48510 * 109.46773 * 120.00209 * 19 17 15 22 22 H 1.48502 * 109.47132 * 239.99824 * 19 17 15 23 23 C 1.43437 * 118.92016 * 289.57939 * 14 13 12 24 24 C 1.54848 * 109.20446 * 276.31979 * 9 8 6 25 25 C 1.39925 * 118.12609 * 0.47025 * 5 4 3 26 26 C 1.50696 * 120.54075 * 179.80377 * 25 5 4 27 27 C 1.52999 * 117.50267 * 179.89763 * 26 25 5 28 28 C 1.52996 * 117.50198 * 248.56130 * 26 25 5 29 29 N 1.31857 * 118.95167 * 179.97438 * 2 1 3 30 30 H 1.08998 * 109.47300 * 270.02080 * 1 2 3 31 31 H 1.08998 * 109.47301 * 30.01897 * 1 2 3 32 32 H 1.09000 * 109.47474 * 150.01985 * 1 2 3 33 33 H 1.08002 * 120.53439 * 180.02562 * 4 3 2 34 34 H 0.96998 * 120.00312 * 0.02562 * 8 6 5 35 35 H 1.09005 * 110.24807 * 336.99668 * 11 9 8 36 36 H 1.09005 * 110.25082 * 99.04516 * 11 9 8 37 37 H 1.08998 * 108.52254 * 31.83271 * 12 11 9 38 38 H 1.09004 * 108.52308 * 149.35169 * 12 11 9 39 39 H 1.09006 * 109.84055 * 177.91265 * 13 12 11 40 40 H 1.08990 * 109.84762 * 298.83142 * 13 12 11 41 41 H 0.96998 * 120.00012 * 180.02562 * 18 17 15 42 42 H 1.09000 * 108.16138 * 213.28746 * 23 14 13 43 43 H 1.08997 * 108.16050 * 330.06751 * 23 14 13 44 44 H 1.08994 * 109.36110 * 320.99566 * 24 9 8 45 45 H 1.08999 * 109.35454 * 80.58782 * 24 9 8 46 46 H 1.09002 * 115.54943 * 34.23384 * 26 25 5 47 47 H 1.08999 * 117.50380 * 215.00615 * 27 26 25 48 48 H 1.09005 * 117.49752 * 0.02562 * 27 26 25 49 49 H 1.08999 * 117.49853 * 359.97350 * 28 26 25 50 50 H 1.08996 * 117.50197 * 144.99494 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1454 1.1540 0.0000 4 6 3.4660 1.2004 0.0005 5 6 4.1855 -0.0002 0.0064 6 6 5.6638 -0.0003 0.0132 7 8 6.2716 -1.0527 -0.0093 8 7 6.3376 1.1665 0.0445 9 6 7.8026 1.1664 0.0507 10 1 8.1637 0.3447 -0.5676 11 6 8.2991 2.4654 -0.5149 12 6 9.5298 2.1043 -1.3403 13 6 10.7841 2.1216 -0.5886 14 7 10.6440 1.1497 0.5475 15 6 11.3441 -0.0272 0.5468 16 1 11.5353 -0.5423 1.4766 17 6 11.8080 -0.5581 -0.6489 18 7 11.2497 -0.2035 -1.7869 19 14 13.2246 -1.7756 -0.6430 20 1 13.6724 -2.0073 0.7538 21 1 12.7758 -3.0602 -1.2380 22 1 14.3515 -1.2279 -1.4402 23 6 9.7647 1.4740 1.6333 24 6 8.3058 0.9701 1.5019 25 6 3.4660 -1.2003 0.0013 26 6 4.1855 -2.5244 0.0028 27 6 3.3305 -3.7932 -0.0005 28 6 4.0929 -3.3802 -1.2620 29 7 2.1452 -1.1538 0.0005 30 1 -0.3634 0.0004 1.0276 31 1 -0.3634 0.8898 -0.5141 32 1 -0.3634 -0.8901 -0.5135 33 1 3.9817 2.1493 0.0009 34 1 5.8526 2.0063 0.0628 35 1 7.5370 2.9157 -1.1510 36 1 8.5717 3.1478 0.2902 37 1 9.3881 1.1062 -1.7547 38 1 9.6117 2.8102 -2.1669 39 1 11.6073 1.8183 -1.2356 40 1 10.9687 3.1229 -0.1998 41 1 11.5736 -0.5748 -2.6225 42 1 10.1867 1.0578 2.5481 43 1 9.7384 2.5587 1.7368 44 1 7.6672 1.5304 2.1847 45 1 8.2646 -0.0884 1.7584 46 1 5.1218 -2.5501 0.5604 47 1 3.7041 -4.6535 0.5547 48 1 2.2474 -3.6701 -0.0042 49 1 3.5112 -2.9858 -2.0951 50 1 4.9682 -3.9689 -1.5367 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052905996.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:32 Heat of formation + Delta-G solvation = 52.692817 kcal Electronic energy + Delta-G solvation = -30991.049053 eV Core-core repulsion = 27019.517346 eV Total energy + Delta-G solvation = -3971.531707 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.54474 -40.80659 -39.27405 -38.28571 -36.27552 -34.87249 -34.20528 -33.77436 -33.30062 -31.68113 -29.80498 -27.95126 -26.55355 -25.72408 -25.21395 -24.29911 -23.30594 -22.19645 -22.10230 -21.50244 -20.77579 -18.98492 -18.71641 -18.47894 -17.47387 -16.96983 -16.85026 -16.64018 -16.19828 -16.05939 -15.86119 -15.54303 -15.31289 -14.98375 -14.97689 -14.44617 -14.08242 -13.91308 -13.55669 -13.48969 -13.35152 -13.24021 -13.12486 -13.01943 -12.78810 -12.71075 -12.53466 -12.40071 -12.33400 -12.10608 -11.93478 -11.76740 -11.61551 -11.48823 -11.25618 -11.18524 -11.10272 -10.62573 -10.49718 -10.43789 -10.42362 -9.94112 -8.64004 -7.82454 -5.19815 -0.70337 -0.16977 1.44212 1.47960 1.56392 1.75477 2.05676 2.50090 2.54971 2.69912 2.85786 2.91717 3.22853 3.30526 3.56111 3.63823 3.71996 3.93279 3.98111 4.03855 4.05167 4.14384 4.18281 4.34869 4.49458 4.54364 4.65407 4.67480 4.70129 4.75350 4.81571 4.85201 4.88957 4.90989 4.95741 5.06182 5.11887 5.20180 5.22771 5.30481 5.31259 5.32939 5.42159 5.52738 5.67201 5.69251 5.76305 5.79638 6.21664 6.43397 6.52761 6.87381 7.20608 7.22162 7.94895 8.42089 9.21852 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.014546 B = 0.003046 C = 0.002680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1924.467422 B = 9190.393778 C =10445.392551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.330 3.670 3 N -0.532 5.532 4 C 0.200 3.800 5 C -0.259 4.259 6 C 0.560 3.440 7 O -0.560 6.560 8 N -0.705 5.705 9 C 0.171 3.829 10 H 0.045 0.955 11 C -0.107 4.107 12 C -0.124 4.124 13 C 0.166 3.834 14 N -0.602 5.602 15 C -0.258 4.258 16 H 0.057 0.943 17 C -0.042 4.042 18 N -0.913 5.913 19 Si 0.951 3.049 20 H -0.274 1.274 21 H -0.300 1.300 22 H -0.288 1.288 23 C 0.156 3.844 24 C -0.141 4.141 25 C 0.258 3.742 26 C -0.144 4.144 27 C -0.140 4.140 28 C -0.149 4.149 29 N -0.530 5.530 30 H 0.105 0.895 31 H 0.102 0.898 32 H 0.096 0.904 33 H 0.206 0.794 34 H 0.411 0.589 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.058 0.942 38 H 0.046 0.954 39 H 0.054 0.946 40 H 0.034 0.966 41 H 0.245 0.755 42 H 0.026 0.974 43 H 0.060 0.940 44 H 0.080 0.920 45 H 0.019 0.981 46 H 0.125 0.875 47 H 0.111 0.889 48 H 0.113 0.887 49 H 0.092 0.908 50 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.523 5.682 3.005 22.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.065 3.935 3 N -0.247 5.247 4 C 0.033 3.967 5 C -0.267 4.267 6 C 0.346 3.654 7 O -0.439 6.439 8 N -0.357 5.357 9 C 0.067 3.933 10 H 0.063 0.937 11 C -0.145 4.145 12 C -0.163 4.163 13 C 0.043 3.957 14 N -0.324 5.324 15 C -0.389 4.389 16 H 0.075 0.925 17 C -0.239 4.239 18 N -0.559 5.559 19 Si 0.781 3.219 20 H -0.199 1.199 21 H -0.228 1.228 22 H -0.215 1.215 23 C 0.027 3.973 24 C -0.183 4.183 25 C 0.112 3.888 26 C -0.163 4.163 27 C -0.177 4.177 28 C -0.187 4.187 29 N -0.245 5.245 30 H 0.123 0.877 31 H 0.121 0.879 32 H 0.115 0.885 33 H 0.223 0.777 34 H 0.249 0.751 35 H 0.106 0.894 36 H 0.104 0.896 37 H 0.077 0.923 38 H 0.064 0.936 39 H 0.072 0.928 40 H 0.052 0.948 41 H 0.054 0.946 42 H 0.044 0.956 43 H 0.079 0.921 44 H 0.098 0.902 45 H 0.038 0.962 46 H 0.143 0.857 47 H 0.129 0.871 48 H 0.131 0.869 49 H 0.111 0.889 50 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -22.023 4.919 2.847 22.745 hybrid contribution 1.977 -0.812 -0.279 2.155 sum -20.046 4.107 2.568 20.623 Atomic orbital electron populations 1.20791 0.82458 1.05557 1.05427 1.24328 1.00110 0.82867 0.86223 1.68425 1.09541 1.30070 1.16650 1.23944 0.89603 0.97913 0.85262 1.21504 0.95140 0.97031 1.12977 1.18090 0.86463 0.84429 0.76399 1.90775 1.70213 1.32181 1.50727 1.46137 1.07648 1.07943 1.73941 1.20855 0.76946 0.98807 0.96699 0.93685 1.21286 0.97786 0.95282 1.00133 1.20735 0.95639 1.01760 0.98146 1.20125 0.97366 0.89309 0.88909 1.44449 1.47036 1.18207 1.22676 1.19366 1.27090 1.00421 0.91981 0.92549 1.25444 1.02238 1.00351 0.95827 1.70153 1.40855 1.47581 0.97264 0.85461 0.80516 0.78568 0.77384 1.19863 1.22823 1.21456 1.20492 0.88244 0.98080 0.90441 1.23177 0.99586 0.99616 0.95874 1.21064 0.89014 0.93998 0.84694 1.21276 1.01218 0.87564 1.06213 1.23071 0.99310 0.95756 0.99533 1.22896 1.03042 1.01545 0.91267 1.68166 1.08330 1.30879 1.17148 0.87659 0.87924 0.88487 0.77704 0.75092 0.89434 0.89583 0.92299 0.93574 0.92770 0.94772 0.94570 0.95574 0.92139 0.90153 0.96232 0.85749 0.87075 0.86870 0.88902 0.88148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.99 10.31 71.23 0.73 -0.25 16 2 C 0.33 6.85 7.64 138.70 1.06 7.91 16 3 N -0.53 -11.11 10.32 -186.79 -1.93 -13.04 16 4 C 0.20 4.07 10.81 85.06 0.92 4.99 16 5 C -0.26 -7.02 5.91 -19.91 -0.12 -7.13 16 6 C 0.56 18.44 7.72 86.78 0.67 19.11 16 7 O -0.56 -23.88 13.16 -3.89 -0.05 -23.93 16 8 N -0.70 -19.71 4.93 -446.83 -2.20 -21.92 16 9 C 0.17 6.13 2.22 44.70 0.10 6.23 16 10 H 0.04 2.23 6.27 -2.39 -0.01 2.21 16 11 C -0.11 -3.28 5.34 29.51 0.16 -3.13 16 12 C -0.12 -4.97 5.03 28.36 0.14 -4.83 16 13 C 0.17 7.40 5.25 83.58 0.44 7.84 16 14 N -0.60 -28.99 2.60 -707.84 -1.84 -30.83 16 15 C -0.26 -14.27 9.62 84.03 0.81 -13.46 16 16 H 0.06 3.17 7.90 -2.91 -0.02 3.15 16 17 C -0.04 -2.37 4.87 84.86 0.41 -1.96 16 18 N -0.91 -52.36 9.52 21.65 0.21 -52.15 16 19 Si 0.95 45.99 29.60 68.60 2.03 48.02 16 20 H -0.27 -12.85 7.11 99.48 0.71 -12.15 16 21 H -0.30 -14.85 7.11 99.48 0.71 -14.15 16 22 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 23 C 0.16 6.20 5.18 87.60 0.45 6.66 16 24 C -0.14 -5.19 5.98 31.88 0.19 -5.00 16 25 C 0.26 7.32 6.53 42.92 0.28 7.60 16 26 C -0.14 -4.24 4.83 -11.54 -0.06 -4.29 16 27 C -0.14 -3.19 10.05 30.62 0.31 -2.88 16 28 C -0.15 -3.90 10.24 30.62 0.31 -3.59 16 29 N -0.53 -13.08 9.34 -175.04 -1.63 -14.72 16 30 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.21 2.47 6.54 -2.91 -0.02 2.45 16 34 H 0.41 7.59 6.62 -92.71 -0.61 6.98 16 35 H 0.09 2.12 7.85 -2.38 -0.02 2.10 16 36 H 0.09 2.33 6.28 -2.38 -0.01 2.32 16 37 H 0.06 2.96 5.31 -2.39 -0.01 2.95 16 38 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.05 2.80 6.05 -2.38 -0.01 2.79 16 40 H 0.03 1.33 8.12 -2.39 -0.02 1.31 16 41 H 0.24 13.85 8.31 -92.71 -0.77 13.08 16 42 H 0.03 1.07 7.99 -2.39 -0.02 1.05 16 43 H 0.06 2.03 6.88 -2.39 -0.02 2.01 16 44 H 0.08 2.39 8.12 -2.39 -0.02 2.37 16 45 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 46 H 0.12 4.40 6.00 -2.39 -0.01 4.39 16 47 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 48 H 0.11 2.40 7.58 -2.38 -0.02 2.38 16 49 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 50 H 0.10 2.65 8.14 -2.39 -0.02 2.63 16 Total: -1.00 -71.86 389.25 1.75 -70.11 By element: Atomic # 1 Polarization: 24.28 SS G_CDS: 0.36 Total: 24.64 kcal Atomic # 6 Polarization: 7.00 SS G_CDS: 6.81 Total: 13.82 kcal Atomic # 7 Polarization: -125.25 SS G_CDS: -7.40 Total: -132.66 kcal Atomic # 8 Polarization: -23.88 SS G_CDS: -0.05 Total: -23.93 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.02 kcal Total: -71.86 1.75 -70.11 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052905996.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.804 kcal (2) G-P(sol) polarization free energy of solvation -71.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds