Wall clock time and date at job start Wed Apr 1 2020 03:04:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.31883 * 118.95070 * 2 1 4 4 C 1.32132 * 120.96449 * 179.68374 * 3 2 1 5 5 C 1.39965 * 118.92405 * 0.55769 * 4 3 2 6 6 C 1.47836 * 120.93857 * 179.71671 * 5 4 3 7 7 O 1.21559 * 119.99684 * 173.82592 * 6 5 4 8 8 N 1.34773 * 120.00259 * 353.83497 * 6 5 4 9 9 C 1.46496 * 119.99786 * 180.27183 * 8 6 5 10 10 H 1.08999 * 109.50025 * 324.65108 * 9 8 6 11 11 C 1.53051 * 109.49565 * 204.56185 * 9 8 6 12 12 C 1.53036 * 109.53852 * 178.68464 * 11 9 8 13 13 C 1.53198 * 109.31416 * 61.36359 * 12 11 9 14 14 H 1.08992 * 109.58438 * 65.14990 * 13 12 11 15 15 C 1.53003 * 109.58768 * 185.58004 * 13 12 11 16 16 N 1.46930 * 108.77226 * 305.36375 * 13 12 11 17 17 C 1.36937 * 120.62809 * 233.62779 * 16 13 12 18 18 H 1.07994 * 119.99963 * 32.54023 * 17 16 13 19 19 C 1.38810 * 119.99718 * 212.53960 * 17 16 13 20 20 N 1.31624 * 120.00146 * 12.99408 * 19 17 16 21 21 Si 1.86797 * 120.00107 * 192.99723 * 19 17 16 22 22 H 1.48505 * 109.46920 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.47358 * 119.99640 * 21 19 17 24 24 H 1.48495 * 109.47532 * 239.99940 * 21 19 17 25 25 C 1.46928 * 118.73622 * 53.61225 * 16 13 12 26 26 C 1.39923 * 118.12045 * 359.45600 * 5 4 3 27 27 C 1.50705 * 120.54201 * 180.29022 * 26 5 4 28 28 C 1.52994 * 117.49981 * 176.97758 * 27 26 5 29 29 C 1.52997 * 117.49623 * 108.35144 * 27 26 5 30 30 N 1.31855 * 118.95355 * 179.97438 * 2 1 3 31 31 H 1.08998 * 109.46723 * 270.02663 * 1 2 3 32 32 H 1.08996 * 109.47057 * 30.02700 * 1 2 3 33 33 H 1.08997 * 109.46706 * 150.02384 * 1 2 3 34 34 H 1.08009 * 120.53794 * 180.30494 * 4 3 2 35 35 H 0.96998 * 120.00093 * 359.97438 * 8 6 5 36 36 H 1.08995 * 109.45793 * 298.70301 * 11 9 8 37 37 H 1.08997 * 109.45883 * 58.65838 * 11 9 8 38 38 H 1.09001 * 109.50004 * 301.41370 * 12 11 9 39 39 H 1.09005 * 109.52669 * 181.33172 * 12 11 9 40 40 H 1.08998 * 109.47170 * 179.29112 * 15 13 12 41 41 H 1.09001 * 109.46699 * 299.29342 * 15 13 12 42 42 H 1.09002 * 109.46857 * 59.28400 * 15 13 12 43 43 H 0.97004 * 119.99944 * 179.97438 * 20 19 17 44 44 H 1.09003 * 109.58070 * 186.60359 * 25 16 13 45 45 H 1.08995 * 109.58963 * 66.17637 * 25 16 13 46 46 H 1.09002 * 115.54755 * 322.68944 * 27 26 5 47 47 H 1.08997 * 117.50397 * 359.97438 * 28 27 26 48 48 H 1.09001 * 117.49386 * 145.02558 * 28 27 26 49 49 H 1.09007 * 117.49757 * 214.98005 * 29 27 26 50 50 H 1.09001 * 117.50330 * 0.02562 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1454 1.1540 0.0000 4 6 3.4659 1.2005 0.0063 5 6 4.1855 0.0000 0.0010 6 6 5.6639 0.0000 0.0014 7 8 6.2716 -1.0471 0.1100 8 7 6.3378 1.1610 -0.1186 9 6 7.8028 1.1603 -0.1242 10 1 8.1688 0.3860 0.5501 11 6 8.3160 2.5259 0.3386 12 6 9.8461 2.5157 0.3645 13 6 10.3751 2.2541 -1.0493 14 1 10.1052 3.0857 -1.7000 15 6 11.8972 2.1043 -1.0079 16 7 9.7719 1.0146 -1.5580 17 6 10.5586 0.0010 -2.0363 18 1 11.5357 -0.1714 -1.6097 19 6 10.1003 -0.8048 -3.0694 20 7 9.0375 -0.4491 -3.7596 21 14 10.9918 -2.3941 -3.4802 22 1 12.1473 -2.5647 -2.5632 23 1 10.0604 -3.5397 -3.3206 24 1 11.4761 -2.3417 -4.8830 25 6 8.3085 0.8834 -1.5434 26 6 3.4662 -1.2002 0.0010 27 6 4.1857 -2.5243 0.0021 28 6 3.3322 -3.7921 0.0736 29 6 4.1466 -3.3485 1.2906 30 7 2.1454 -1.1538 0.0005 31 1 -0.3633 0.0005 1.0277 32 1 -0.3633 0.8897 -0.5142 33 1 -0.3632 -0.8902 -0.5135 34 1 3.9817 2.1494 0.0112 35 1 5.8529 1.9965 -0.2055 36 1 7.9696 3.2964 -0.3501 37 1 7.9372 2.7362 1.3388 38 1 10.1934 1.7289 1.0342 39 1 10.2110 3.4806 0.7167 40 1 12.2702 1.9058 -2.0126 41 1 12.3426 3.0246 -0.6301 42 1 12.1630 1.2759 -0.3512 43 1 8.7174 -1.0121 -4.4818 44 1 8.0295 -0.1277 -1.8399 45 1 7.8702 1.6033 -2.2345 46 1 5.0978 -2.5642 -0.5934 47 1 2.2503 -3.6685 0.1203 48 1 3.6827 -4.6663 -0.4750 49 1 5.0329 -3.9309 1.5425 50 1 3.6002 -2.9332 2.1373 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072039745.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:17 Heat of formation + Delta-G solvation = 57.245739 kcal Electronic energy + Delta-G solvation = -30970.406951 eV Core-core repulsion = 26999.072674 eV Total energy + Delta-G solvation = -3971.334278 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.48180 -39.34898 -37.70903 -37.16242 -34.52948 -33.71630 -33.11114 -32.79596 -30.78229 -29.90625 -28.90891 -26.16447 -25.42201 -24.91760 -23.76219 -22.35716 -22.22524 -21.23446 -20.88376 -20.21445 -19.34151 -17.86876 -17.51734 -16.46841 -16.38914 -15.67119 -15.48605 -15.12559 -15.07711 -14.41687 -14.19870 -13.94957 -13.81604 -13.78470 -13.42671 -13.36419 -12.88666 -12.74818 -12.67083 -12.42541 -12.04097 -11.86770 -11.68341 -11.51538 -11.48094 -11.34442 -11.13250 -10.90498 -10.75392 -10.57904 -10.51933 -10.42352 -10.26628 -10.21486 -9.97325 -9.74315 -9.49716 -9.41481 -9.38413 -9.30209 -8.60696 -8.44033 -6.58167 -5.75912 -3.23937 0.36046 0.86148 2.97247 3.29699 3.40679 3.48172 3.49339 3.57907 3.66815 3.80466 3.97783 4.23614 4.51456 4.66329 4.79318 4.92905 5.03964 5.06673 5.14158 5.26286 5.30403 5.32198 5.34607 5.47338 5.54512 5.60530 5.64132 5.68746 5.74420 5.90005 5.94275 6.07386 6.17152 6.18164 6.25412 6.27431 6.32008 6.37813 6.43650 6.46857 6.60941 6.70416 6.79181 6.86130 7.04108 7.12350 7.27911 7.69351 7.76225 7.86022 7.88640 8.46405 8.51705 9.23549 9.86554 10.43672 11.32176 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.011687 B = 0.003445 C = 0.002926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2395.306180 B = 8125.317056 C = 9568.178437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.332 3.668 3 N -0.528 5.528 4 C 0.185 3.815 5 C -0.236 4.236 6 C 0.564 3.436 7 O -0.513 6.513 8 N -0.713 5.713 9 C 0.117 3.883 10 H 0.085 0.915 11 C -0.117 4.117 12 C -0.126 4.126 13 C 0.165 3.835 14 H 0.025 0.975 15 C -0.136 4.136 16 N -0.582 5.582 17 C -0.253 4.253 18 H 0.069 0.931 19 C 0.009 3.991 20 N -0.900 5.900 21 Si 0.899 3.101 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.291 1.291 25 C 0.170 3.830 26 C 0.268 3.732 27 C -0.116 4.116 28 C -0.165 4.165 29 C -0.146 4.146 30 N -0.521 5.521 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.172 0.828 35 H 0.390 0.610 36 H 0.059 0.941 37 H 0.051 0.949 38 H 0.061 0.939 39 H 0.055 0.945 40 H 0.061 0.939 41 H 0.037 0.963 42 H 0.053 0.947 43 H 0.252 0.748 44 H 0.090 0.910 45 H 0.017 0.983 46 H 0.150 0.850 47 H 0.105 0.895 48 H 0.098 0.902 49 H 0.103 0.897 50 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.452 3.532 9.893 17.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.066 3.934 3 N -0.242 5.242 4 C 0.018 3.982 5 C -0.244 4.244 6 C 0.348 3.652 7 O -0.389 6.389 8 N -0.364 5.364 9 C 0.012 3.988 10 H 0.103 0.897 11 C -0.155 4.155 12 C -0.166 4.166 13 C 0.058 3.942 14 H 0.043 0.957 15 C -0.193 4.193 16 N -0.306 5.306 17 C -0.383 4.383 18 H 0.086 0.914 19 C -0.190 4.190 20 N -0.543 5.543 21 Si 0.729 3.271 22 H -0.202 1.202 23 H -0.215 1.215 24 H -0.218 1.218 25 C 0.043 3.957 26 C 0.122 3.878 27 C -0.135 4.135 28 C -0.202 4.202 29 C -0.184 4.184 30 N -0.236 5.236 31 H 0.106 0.894 32 H 0.106 0.894 33 H 0.106 0.894 34 H 0.189 0.811 35 H 0.223 0.777 36 H 0.078 0.922 37 H 0.070 0.930 38 H 0.079 0.921 39 H 0.074 0.926 40 H 0.080 0.920 41 H 0.056 0.944 42 H 0.072 0.928 43 H 0.062 0.938 44 H 0.109 0.891 45 H 0.036 0.964 46 H 0.167 0.833 47 H 0.123 0.877 48 H 0.116 0.884 49 H 0.122 0.878 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -14.049 2.692 9.813 17.347 hybrid contribution 1.046 -0.150 -0.422 1.138 sum -13.003 2.542 9.391 16.240 Atomic orbital electron populations 1.20607 0.85433 1.04405 1.03966 1.23447 0.98337 0.83333 0.88264 1.68251 1.09670 1.30127 1.16195 1.23437 0.89607 0.97642 0.87497 1.21684 0.96752 0.95853 1.10080 1.17631 0.85382 0.84612 0.77563 1.90791 1.69010 1.30494 1.48565 1.45999 1.08436 1.08026 1.73916 1.22069 0.76406 0.97562 1.02715 0.89718 1.21684 0.97215 0.96687 0.99904 1.22047 0.94004 1.00464 1.00054 1.20506 0.92432 0.89834 0.91426 0.95740 1.21791 0.95780 0.99460 1.02292 1.43994 1.01099 1.13148 1.72350 1.19136 1.00492 1.07073 1.11576 0.91367 1.25162 0.98152 0.99996 0.95676 1.69997 1.25683 1.37195 1.21467 0.86274 0.79196 0.83876 0.77731 1.20167 1.21509 1.21751 1.21039 0.83549 1.02365 0.88701 1.20980 0.88233 0.93953 0.84636 1.21261 1.01286 0.86294 1.04622 1.23016 0.99021 0.96865 1.01300 1.22849 1.02540 1.01961 0.91099 1.68090 1.09139 1.30056 1.16288 0.89430 0.89387 0.89421 0.81138 0.77664 0.92219 0.93019 0.92051 0.92642 0.91955 0.94387 0.92835 0.93776 0.89133 0.96445 0.83297 0.87697 0.88362 0.87833 0.89299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.69 10.31 36.01 0.37 -0.32 16 2 C 0.33 4.09 7.64 -157.06 -1.20 2.89 16 3 N -0.53 -6.67 10.32 -10.39 -0.11 -6.78 16 4 C 0.19 2.28 10.80 -16.78 -0.18 2.10 16 5 C -0.24 -3.49 5.91 -104.69 -0.62 -4.11 16 6 C 0.56 9.63 7.71 -12.34 -0.10 9.54 16 7 O -0.51 -10.54 13.30 5.31 0.07 -10.47 16 8 N -0.71 -11.06 5.04 -54.64 -0.28 -11.34 16 9 C 0.12 2.17 2.60 -67.81 -0.18 1.99 16 10 H 0.08 1.78 7.58 -51.93 -0.39 1.39 16 11 C -0.12 -1.79 5.35 -26.69 -0.14 -1.93 16 12 C -0.13 -2.07 5.37 -26.61 -0.14 -2.21 16 13 C 0.16 3.29 3.50 -67.59 -0.24 3.06 16 14 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 15 C -0.14 -2.51 7.97 37.16 0.30 -2.21 16 16 N -0.58 -14.17 2.97 -164.77 -0.49 -14.66 16 17 C -0.25 -6.81 8.49 -15.06 -0.13 -6.94 16 18 H 0.07 1.80 6.32 -52.49 -0.33 1.47 16 19 C 0.01 0.26 4.98 -17.43 -0.09 0.18 16 20 N -0.90 -26.29 11.29 55.49 0.63 -25.67 16 21 Si 0.90 22.07 29.57 -169.99 -5.03 17.04 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 24 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 25 C 0.17 4.00 4.83 -3.71 -0.02 3.98 16 26 C 0.27 4.04 6.53 -81.82 -0.53 3.51 16 27 C -0.12 -1.74 4.64 -91.77 -0.43 -2.17 16 28 C -0.16 -2.02 10.04 -26.73 -0.27 -2.29 16 29 C -0.15 -1.87 10.23 -26.73 -0.27 -2.14 16 30 N -0.52 -7.19 9.34 -6.67 -0.06 -7.25 16 31 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.17 1.52 6.58 -52.48 -0.35 1.18 16 35 H 0.39 4.66 6.78 -40.82 -0.28 4.38 16 36 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.06 1.25 7.65 -51.93 -0.40 0.85 16 41 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.05 1.00 7.43 -51.93 -0.39 0.62 16 43 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 44 H 0.09 2.51 6.28 -51.93 -0.33 2.19 16 45 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.15 2.62 6.33 -51.93 -0.33 2.29 16 47 H 0.10 1.24 7.58 -51.93 -0.39 0.85 16 48 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 49 H 0.10 1.27 8.14 -51.92 -0.42 0.85 16 50 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 LS Contribution 396.75 15.07 5.98 5.98 Total: -1.00 -32.23 396.75 -10.96 -43.19 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: -7.81 Total: 7.01 kcal Atomic # 6 Polarization: 6.79 SS G_CDS: -3.86 Total: 2.93 kcal Atomic # 7 Polarization: -65.38 SS G_CDS: -0.31 Total: -65.69 kcal Atomic # 8 Polarization: -10.54 SS G_CDS: 0.07 Total: -10.47 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.03 Total: 17.04 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -32.23 -10.96 -43.19 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072039745.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.434 kcal (2) G-P(sol) polarization free energy of solvation -32.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds