Wall clock time and date at job start Wed Apr 1 2020 03:04:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.31883 * 118.95070 * 2 1 4 4 C 1.32132 * 120.96449 * 179.68374 * 3 2 1 5 5 C 1.39965 * 118.92405 * 0.55769 * 4 3 2 6 6 C 1.47836 * 120.93857 * 179.71671 * 5 4 3 7 7 O 1.21559 * 119.99684 * 173.82592 * 6 5 4 8 8 N 1.34773 * 120.00259 * 353.83497 * 6 5 4 9 9 C 1.46496 * 119.99786 * 180.27183 * 8 6 5 10 10 H 1.08999 * 109.50025 * 324.65108 * 9 8 6 11 11 C 1.53051 * 109.49565 * 204.56185 * 9 8 6 12 12 C 1.53036 * 109.53852 * 178.68464 * 11 9 8 13 13 C 1.53198 * 109.31416 * 61.36359 * 12 11 9 14 14 H 1.08992 * 109.58438 * 65.14990 * 13 12 11 15 15 C 1.53003 * 109.58768 * 185.58004 * 13 12 11 16 16 N 1.46930 * 108.77226 * 305.36375 * 13 12 11 17 17 C 1.36937 * 120.62809 * 233.62779 * 16 13 12 18 18 H 1.07994 * 119.99963 * 32.54023 * 17 16 13 19 19 C 1.38810 * 119.99718 * 212.53960 * 17 16 13 20 20 N 1.31624 * 120.00146 * 12.99408 * 19 17 16 21 21 Si 1.86797 * 120.00107 * 192.99723 * 19 17 16 22 22 H 1.48505 * 109.46920 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.47358 * 119.99640 * 21 19 17 24 24 H 1.48495 * 109.47532 * 239.99940 * 21 19 17 25 25 C 1.46928 * 118.73622 * 53.61225 * 16 13 12 26 26 C 1.39923 * 118.12045 * 359.45600 * 5 4 3 27 27 C 1.50705 * 120.54201 * 180.29022 * 26 5 4 28 28 C 1.52994 * 117.49981 * 176.97758 * 27 26 5 29 29 C 1.52997 * 117.49623 * 108.35144 * 27 26 5 30 30 N 1.31855 * 118.95355 * 179.97438 * 2 1 3 31 31 H 1.08998 * 109.46723 * 270.02663 * 1 2 3 32 32 H 1.08996 * 109.47057 * 30.02700 * 1 2 3 33 33 H 1.08997 * 109.46706 * 150.02384 * 1 2 3 34 34 H 1.08009 * 120.53794 * 180.30494 * 4 3 2 35 35 H 0.96998 * 120.00093 * 359.97438 * 8 6 5 36 36 H 1.08995 * 109.45793 * 298.70301 * 11 9 8 37 37 H 1.08997 * 109.45883 * 58.65838 * 11 9 8 38 38 H 1.09001 * 109.50004 * 301.41370 * 12 11 9 39 39 H 1.09005 * 109.52669 * 181.33172 * 12 11 9 40 40 H 1.08998 * 109.47170 * 179.29112 * 15 13 12 41 41 H 1.09001 * 109.46699 * 299.29342 * 15 13 12 42 42 H 1.09002 * 109.46857 * 59.28400 * 15 13 12 43 43 H 0.97004 * 119.99944 * 179.97438 * 20 19 17 44 44 H 1.09003 * 109.58070 * 186.60359 * 25 16 13 45 45 H 1.08995 * 109.58963 * 66.17637 * 25 16 13 46 46 H 1.09002 * 115.54755 * 322.68944 * 27 26 5 47 47 H 1.08997 * 117.50397 * 359.97438 * 28 27 26 48 48 H 1.09001 * 117.49386 * 145.02558 * 28 27 26 49 49 H 1.09007 * 117.49757 * 214.98005 * 29 27 26 50 50 H 1.09001 * 117.50330 * 0.02562 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1454 1.1540 0.0000 4 6 3.4659 1.2005 0.0063 5 6 4.1855 0.0000 0.0010 6 6 5.6639 0.0000 0.0014 7 8 6.2716 -1.0471 0.1100 8 7 6.3378 1.1610 -0.1186 9 6 7.8028 1.1603 -0.1242 10 1 8.1688 0.3860 0.5501 11 6 8.3160 2.5259 0.3386 12 6 9.8461 2.5157 0.3645 13 6 10.3751 2.2541 -1.0493 14 1 10.1052 3.0857 -1.7000 15 6 11.8972 2.1043 -1.0079 16 7 9.7719 1.0146 -1.5580 17 6 10.5586 0.0010 -2.0363 18 1 11.5357 -0.1714 -1.6097 19 6 10.1003 -0.8048 -3.0694 20 7 9.0375 -0.4491 -3.7596 21 14 10.9918 -2.3941 -3.4802 22 1 12.1473 -2.5647 -2.5632 23 1 10.0604 -3.5397 -3.3206 24 1 11.4761 -2.3417 -4.8830 25 6 8.3085 0.8834 -1.5434 26 6 3.4662 -1.2002 0.0010 27 6 4.1857 -2.5243 0.0021 28 6 3.3322 -3.7921 0.0736 29 6 4.1466 -3.3485 1.2906 30 7 2.1454 -1.1538 0.0005 31 1 -0.3633 0.0005 1.0277 32 1 -0.3633 0.8897 -0.5142 33 1 -0.3632 -0.8902 -0.5135 34 1 3.9817 2.1494 0.0112 35 1 5.8529 1.9965 -0.2055 36 1 7.9696 3.2964 -0.3501 37 1 7.9372 2.7362 1.3388 38 1 10.1934 1.7289 1.0342 39 1 10.2110 3.4806 0.7167 40 1 12.2702 1.9058 -2.0126 41 1 12.3426 3.0246 -0.6301 42 1 12.1630 1.2759 -0.3512 43 1 8.7174 -1.0121 -4.4818 44 1 8.0295 -0.1277 -1.8399 45 1 7.8702 1.6033 -2.2345 46 1 5.0978 -2.5642 -0.5934 47 1 2.2503 -3.6685 0.1203 48 1 3.6827 -4.6663 -0.4750 49 1 5.0329 -3.9309 1.5425 50 1 3.6002 -2.9332 2.1373 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001072039745.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:16 Heat of formation + Delta-G solvation = 37.219931 kcal Electronic energy + Delta-G solvation = -30971.275336 eV Core-core repulsion = 26999.072674 eV Total energy + Delta-G solvation = -3972.202662 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.53985 -40.73343 -39.21725 -38.28764 -36.05355 -34.85670 -34.54653 -34.11952 -32.19381 -31.74177 -29.85863 -27.75371 -26.91510 -26.28503 -24.85751 -23.97943 -23.31238 -22.54372 -22.06430 -21.65160 -20.96829 -18.95189 -18.76490 -18.29413 -17.52421 -17.16850 -16.70010 -16.63920 -16.13753 -15.87805 -15.76371 -15.43399 -15.25413 -14.99468 -14.96562 -14.52415 -14.33949 -14.11439 -13.55830 -13.52660 -13.32955 -13.07493 -13.02601 -12.80504 -12.77118 -12.71969 -12.56077 -12.51142 -12.38321 -12.30459 -12.11373 -11.96235 -11.70115 -11.58774 -11.35157 -11.26335 -11.12981 -10.68324 -10.57293 -10.49018 -10.43419 -10.06291 -8.57753 -7.85878 -5.35553 -0.69953 -0.17299 1.39683 1.43433 1.51736 1.73578 2.02262 2.49197 2.50871 2.68175 2.85445 2.92564 3.22614 3.31040 3.52442 3.66243 3.77195 3.91181 3.94894 4.04707 4.05440 4.10766 4.16692 4.26756 4.40258 4.52772 4.62326 4.67477 4.70089 4.72332 4.80416 4.82323 4.84967 4.90069 4.95723 5.02134 5.08524 5.09817 5.19862 5.22674 5.30287 5.31437 5.33538 5.44525 5.56110 5.61294 5.71053 5.75167 5.79469 6.41511 6.51544 6.86838 7.15154 7.20878 7.89557 8.40103 9.18965 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.011687 B = 0.003445 C = 0.002926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2395.306180 B = 8125.317056 C = 9568.178437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.329 3.671 3 N -0.532 5.532 4 C 0.200 3.800 5 C -0.259 4.259 6 C 0.562 3.438 7 O -0.556 6.556 8 N -0.701 5.701 9 C 0.134 3.866 10 H 0.057 0.943 11 C -0.108 4.108 12 C -0.118 4.118 13 C 0.153 3.847 14 H 0.021 0.979 15 C -0.129 4.129 16 N -0.602 5.602 17 C -0.249 4.249 18 H 0.072 0.928 19 C -0.049 4.049 20 N -0.933 5.933 21 Si 0.954 3.046 22 H -0.262 1.262 23 H -0.300 1.300 24 H -0.289 1.289 25 C 0.183 3.817 26 C 0.259 3.741 27 C -0.142 4.142 28 C -0.144 4.144 29 C -0.138 4.138 30 N -0.529 5.529 31 H 0.107 0.893 32 H 0.101 0.899 33 H 0.096 0.904 34 H 0.205 0.795 35 H 0.410 0.590 36 H 0.074 0.926 37 H 0.088 0.912 38 H 0.053 0.947 39 H 0.096 0.904 40 H 0.036 0.964 41 H 0.078 0.922 42 H 0.045 0.955 43 H 0.244 0.756 44 H 0.038 0.962 45 H -0.003 1.003 46 H 0.113 0.887 47 H 0.114 0.886 48 H 0.108 0.892 49 H 0.104 0.896 50 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.639 5.639 11.936 19.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.064 3.936 3 N -0.246 5.246 4 C 0.032 3.968 5 C -0.267 4.267 6 C 0.348 3.652 7 O -0.435 6.435 8 N -0.352 5.352 9 C 0.028 3.972 10 H 0.075 0.925 11 C -0.146 4.146 12 C -0.157 4.157 13 C 0.048 3.952 14 H 0.039 0.961 15 C -0.187 4.187 16 N -0.327 5.327 17 C -0.379 4.379 18 H 0.089 0.911 19 C -0.244 4.244 20 N -0.580 5.580 21 Si 0.783 3.217 22 H -0.186 1.186 23 H -0.227 1.227 24 H -0.216 1.216 25 C 0.056 3.944 26 C 0.113 3.887 27 C -0.161 4.161 28 C -0.181 4.181 29 C -0.176 4.176 30 N -0.244 5.244 31 H 0.125 0.875 32 H 0.120 0.880 33 H 0.115 0.885 34 H 0.222 0.778 35 H 0.248 0.752 36 H 0.093 0.907 37 H 0.106 0.894 38 H 0.071 0.929 39 H 0.114 0.886 40 H 0.056 0.944 41 H 0.097 0.903 42 H 0.064 0.936 43 H 0.053 0.947 44 H 0.056 0.944 45 H 0.015 0.985 46 H 0.131 0.869 47 H 0.132 0.868 48 H 0.126 0.874 49 H 0.122 0.878 50 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -15.245 4.849 11.882 19.927 hybrid contribution 1.377 -0.757 -1.055 1.893 sum -13.868 4.092 10.827 18.063 Atomic orbital electron populations 1.20793 0.82351 1.05533 1.05484 1.24355 1.00158 0.82854 0.86253 1.68414 1.09478 1.30104 1.16648 1.23928 0.89653 0.97893 0.85314 1.21510 0.95157 0.97102 1.12890 1.18039 0.86495 0.84188 0.76475 1.90777 1.70175 1.32099 1.50481 1.45758 1.07350 1.08738 1.73392 1.21569 0.77946 0.99201 0.98479 0.92507 1.21663 0.96541 0.94267 1.02151 1.21949 0.94561 1.02263 0.96928 1.20820 0.93410 0.87554 0.93439 0.96109 1.21727 0.94852 1.01230 1.00846 1.44291 1.01299 1.14512 1.72569 1.19444 1.00546 1.07407 1.10522 0.91083 1.25847 0.99263 1.02952 0.96371 1.70153 1.27434 1.38104 1.22262 0.85395 0.78328 0.80326 0.77651 1.18641 1.22708 1.21616 1.20718 0.83659 0.98678 0.91385 1.21038 0.89035 0.93947 0.84696 1.21086 1.01079 0.87956 1.06015 1.23068 0.99108 0.95567 1.00397 1.22883 1.02732 1.01123 0.90902 1.68166 1.08253 1.30873 1.17146 0.87461 0.87989 0.88530 0.77810 0.75245 0.90708 0.89365 0.92859 0.88609 0.94441 0.90346 0.93573 0.94720 0.94366 0.98469 0.86900 0.86805 0.87409 0.87811 0.88496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.11 10.31 71.24 0.73 -0.38 16 2 C 0.33 7.48 7.64 138.71 1.06 8.54 16 3 N -0.53 -12.26 10.32 -186.78 -1.93 -14.19 16 4 C 0.20 4.57 10.80 85.07 0.92 5.49 16 5 C -0.26 -7.70 5.91 -19.91 -0.12 -7.82 16 6 C 0.56 19.90 7.71 86.78 0.67 20.57 16 7 O -0.56 -24.57 13.30 -3.90 -0.05 -24.62 16 8 N -0.70 -21.59 5.04 -445.05 -2.24 -23.83 16 9 C 0.13 4.97 2.60 45.07 0.12 5.09 16 10 H 0.06 2.45 7.58 -2.39 -0.02 2.44 16 11 C -0.11 -3.00 5.35 30.62 0.16 -2.83 16 12 C -0.12 -3.50 5.37 30.67 0.16 -3.34 16 13 C 0.15 5.95 3.50 44.98 0.16 6.10 16 14 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 15 C -0.13 -4.59 7.97 71.98 0.57 -4.01 16 16 N -0.60 -30.01 2.97 -675.23 -2.01 -32.02 16 17 C -0.25 -13.80 8.49 84.03 0.71 -13.08 16 18 H 0.07 3.83 6.32 -2.91 -0.02 3.81 16 19 C -0.05 -2.85 4.98 84.86 0.42 -2.42 16 20 N -0.93 -57.63 11.29 21.65 0.24 -57.39 16 21 Si 0.95 47.21 29.57 68.60 2.03 49.24 16 22 H -0.26 -12.19 7.11 99.48 0.71 -11.49 16 23 H -0.30 -15.23 7.11 99.48 0.71 -14.52 16 24 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 25 C 0.18 8.94 4.83 86.36 0.42 9.36 16 26 C 0.26 7.93 6.53 42.92 0.28 8.21 16 27 C -0.14 -4.50 4.64 -11.54 -0.05 -4.56 16 28 C -0.14 -3.55 10.04 30.59 0.31 -3.24 16 29 C -0.14 -3.61 10.23 30.59 0.31 -3.30 16 30 N -0.53 -14.15 9.34 -175.02 -1.63 -15.79 16 31 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.21 3.02 6.58 -2.91 -0.02 3.00 16 35 H 0.41 9.03 6.78 -92.71 -0.63 8.40 16 36 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.09 1.90 8.14 -2.39 -0.02 1.89 16 38 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.10 2.16 8.14 -2.38 -0.02 2.14 16 40 H 0.04 1.48 7.65 -2.39 -0.02 1.47 16 41 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 42 H 0.05 1.68 7.43 -2.39 -0.02 1.66 16 43 H 0.24 14.79 8.31 -92.71 -0.77 14.02 16 44 H 0.04 2.26 6.28 -2.39 -0.01 2.25 16 45 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 46 H 0.11 4.41 6.33 -2.39 -0.02 4.40 16 47 H 0.11 2.59 7.58 -2.39 -0.02 2.58 16 48 H 0.11 2.40 8.14 -2.39 -0.02 2.38 16 49 H 0.10 2.65 8.14 -2.38 -0.02 2.63 16 50 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 Total: -1.00 -76.25 396.75 1.58 -74.67 By element: Atomic # 1 Polarization: 25.21 SS G_CDS: 0.33 Total: 25.54 kcal Atomic # 6 Polarization: 11.54 SS G_CDS: 6.84 Total: 18.38 kcal Atomic # 7 Polarization: -135.64 SS G_CDS: -7.57 Total: -143.21 kcal Atomic # 8 Polarization: -24.57 SS G_CDS: -0.05 Total: -24.62 kcal Atomic # 14 Polarization: 47.21 SS G_CDS: 2.03 Total: 49.24 kcal Total: -76.25 1.58 -74.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072039745.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.888 kcal (2) G-P(sol) polarization free energy of solvation -76.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds