Wall clock time and date at job start Wed Apr 1 2020 02:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30780 * 125.72226 * 2 1 4 4 C 1.34431 * 109.31891 * 180.02562 * 3 2 1 5 5 C 1.33857 * 107.79649 * 0.02562 * 4 3 2 6 6 N 1.34405 * 125.72032 * 180.02562 * 2 1 3 7 7 C 1.46469 * 128.44795 * 359.78106 * 6 2 1 8 8 C 1.53280 * 108.69465 * 197.38056 * 7 6 2 9 9 H 1.09006 * 109.39349 * 69.27109 * 8 7 6 10 10 C 1.50692 * 109.43346 * 189.15406 * 8 7 6 11 11 O 1.21280 * 120.00000 * 92.84604 * 10 8 7 12 12 N 1.34773 * 120.00371 * 272.84532 * 10 8 7 13 13 C 1.47891 * 134.34734 * 174.62223 * 12 10 8 14 14 C 1.52371 * 85.59430 * 156.55107 * 13 12 10 15 15 C 1.47897 * 134.34109 * 354.67258 * 12 10 8 16 16 C 1.53641 * 116.39985 * 141.35059 * 14 13 12 17 17 C 1.54605 * 102.90191 * 163.00886 * 16 14 13 18 18 N 1.47129 * 107.36362 * 339.15205 * 17 16 14 19 19 C 1.36935 * 125.58877 * 179.10690 * 18 17 16 20 20 H 1.08007 * 120.00503 * 179.97438 * 19 18 17 21 21 C 1.38817 * 119.99841 * 359.97438 * 19 18 17 22 22 N 1.31614 * 120.00110 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 119.99653 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47045 * 90.00128 * 23 21 19 25 25 H 1.48504 * 109.46716 * 210.00026 * 23 21 19 26 26 H 1.48495 * 109.47420 * 329.99879 * 23 21 19 27 27 C 1.47728 * 108.82752 * 359.07310 * 18 17 16 28 28 C 1.53113 * 109.70489 * 309.23105 * 8 7 6 29 29 C 1.50715 * 128.67656 * 179.97438 * 5 4 3 30 30 H 1.08997 * 109.47873 * 269.97989 * 1 2 3 31 31 H 1.09000 * 109.47079 * 29.98498 * 1 2 3 32 32 H 1.09008 * 109.47068 * 149.97979 * 1 2 3 33 33 H 1.07999 * 126.09495 * 179.97438 * 4 3 2 34 34 H 1.08994 * 109.60270 * 77.61703 * 7 6 2 35 35 H 1.09002 * 109.59980 * 317.14461 * 7 6 2 36 36 H 1.09001 * 113.85028 * 42.37951 * 13 12 10 37 37 H 1.08997 * 113.96897 * 270.72993 * 13 12 10 38 38 H 1.08994 * 113.85047 * 89.28152 * 15 12 10 39 39 H 1.09004 * 113.85213 * 317.61678 * 15 12 10 40 40 H 1.09002 * 110.76071 * 44.60757 * 16 14 13 41 41 H 1.09004 * 110.76120 * 281.41764 * 16 14 13 42 42 H 1.08997 * 109.86438 * 98.59870 * 17 16 14 43 43 H 1.08997 * 109.86930 * 219.56924 * 17 16 14 44 44 H 0.96998 * 120.00057 * 180.02562 * 22 21 19 45 45 H 1.09003 * 110.40174 * 141.24763 * 27 18 17 46 46 H 1.08996 * 110.40466 * 263.54552 * 27 18 17 47 47 H 1.09005 * 109.49970 * 189.86019 * 28 8 7 48 48 H 1.09006 * 109.49997 * 309.95011 * 28 8 7 49 49 H 1.09000 * 109.74845 * 76.06773 * 29 5 4 50 50 H 1.09001 * 109.78465 * 315.36969 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2706 1.0617 0.0000 4 6 3.5602 0.6821 -0.0006 5 6 3.5927 -0.6561 -0.0015 6 7 2.2917 -1.0912 -0.0005 7 6 1.8921 -2.5003 0.0033 8 6 3.0925 -3.3502 0.4348 9 1 3.3037 -3.1696 1.4888 10 6 2.7736 -4.8087 0.2301 11 8 3.0794 -5.3565 -0.8078 12 7 2.1487 -5.5046 1.2005 13 6 1.6062 -6.8765 1.3031 14 6 1.7795 -6.7064 2.8074 15 6 1.7317 -5.1996 2.5863 16 6 0.6751 -7.3020 3.6940 17 6 1.3441 -7.3600 5.0866 18 7 2.7999 -7.3260 4.8761 19 6 3.7484 -7.3421 5.8636 20 1 4.7969 -7.3144 5.6058 21 6 3.3624 -7.3940 7.1960 22 7 2.0847 -7.4273 7.5102 23 14 4.6565 -7.4167 8.5430 24 1 4.9746 -6.0237 8.9473 25 1 4.1375 -8.1662 9.7153 26 1 5.8859 -8.0784 8.0373 27 6 3.0706 -7.2724 3.4248 28 6 4.3185 -2.9745 -0.4019 29 6 4.7919 -1.5690 -0.0029 30 1 -0.3635 -0.0004 1.0276 31 1 -0.3633 0.8901 -0.5136 32 1 -0.3634 -0.8899 -0.5142 33 1 4.4170 1.3396 -0.0011 34 1 1.5774 -2.7938 -0.9981 35 1 1.0703 -2.6455 0.7045 36 1 2.2519 -7.6395 0.8684 37 1 0.5671 -6.9666 0.9866 38 1 0.7309 -4.7745 2.6620 39 1 2.4761 -4.6462 3.1589 40 1 0.4035 -8.3013 3.3539 41 1 -0.1990 -6.6509 3.7120 42 1 1.0356 -6.5006 5.6818 43 1 1.0627 -8.2824 5.5946 44 1 1.8150 -7.4632 8.4412 45 1 3.9115 -6.6100 3.2194 46 1 3.2719 -8.2716 3.0387 47 1 5.1180 -3.6926 -0.2188 48 1 4.0545 -2.9853 -1.4595 49 1 5.2352 -1.5963 0.9924 50 1 5.5271 -1.2113 -0.7238 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001072921581.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:23 Heat of formation + Delta-G solvation = 66.587841 kcal Electronic energy + Delta-G solvation = -30766.250892 eV Core-core repulsion = 26795.321719 eV Total energy + Delta-G solvation = -3970.929174 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.41943 -41.86054 -39.98493 -37.42847 -37.08463 -34.40391 -34.11104 -32.37088 -31.54344 -30.91802 -29.68343 -27.67396 -27.39768 -27.29443 -25.89162 -24.97998 -23.18109 -22.13771 -21.86354 -20.44343 -19.99593 -19.53545 -18.81807 -18.10488 -17.77561 -17.17327 -16.87535 -16.64017 -16.57827 -15.89145 -15.70136 -15.58919 -15.18307 -15.05307 -14.64249 -14.52600 -14.25943 -14.12917 -13.97047 -13.82538 -13.70251 -13.65362 -13.23863 -13.21113 -12.89888 -12.87242 -12.83741 -12.74209 -12.43957 -12.21584 -12.04294 -12.02752 -11.93464 -11.75077 -11.65905 -11.28927 -10.98639 -10.78658 -10.66399 -10.55374 -9.76852 -9.16687 -8.87670 -7.84439 -5.18841 1.02830 1.31357 1.46723 1.47052 1.55627 1.62362 1.86398 2.10882 2.49005 3.10739 3.27004 3.30720 3.42340 3.43650 3.58348 3.63382 3.71744 3.74885 3.90220 4.07753 4.11019 4.12217 4.19607 4.24983 4.34576 4.40189 4.52998 4.55430 4.57564 4.63865 4.69959 4.71641 4.75991 4.81529 4.85910 4.87955 4.97387 4.98688 5.04262 5.08552 5.10291 5.13153 5.22825 5.39516 5.46785 5.73533 5.78477 5.83376 6.22127 6.22689 6.59478 6.97965 7.09336 7.13013 7.79180 8.42262 9.25074 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.012316 B = 0.002749 C = 0.002590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2272.840870 B =10184.267570 C =10809.279979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.200 3.800 3 N -0.531 5.531 4 C -0.044 4.044 5 C -0.031 4.031 6 N -0.453 5.453 7 C 0.124 3.876 8 C -0.108 4.108 9 H 0.104 0.896 10 C 0.545 3.455 11 O -0.575 6.575 12 N -0.637 5.637 13 C 0.130 3.870 14 C -0.100 4.100 15 C 0.127 3.873 16 C -0.112 4.112 17 C 0.183 3.817 18 N -0.625 5.625 19 C -0.241 4.241 20 H 0.076 0.924 21 C -0.060 4.060 22 N -0.946 5.946 23 Si 0.971 3.029 24 H -0.286 1.286 25 H -0.295 1.295 26 H -0.273 1.273 27 C 0.159 3.841 28 C -0.102 4.102 29 C -0.038 4.038 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.182 0.818 34 H 0.094 0.906 35 H 0.116 0.884 36 H 0.076 0.924 37 H 0.121 0.879 38 H 0.121 0.879 39 H 0.074 0.926 40 H 0.079 0.921 41 H 0.097 0.903 42 H 0.016 0.984 43 H 0.003 0.997 44 H 0.246 0.754 45 H 0.031 0.969 46 H 0.022 0.978 47 H 0.079 0.921 48 H 0.069 0.931 49 H 0.093 0.907 50 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.223 10.472 -16.696 20.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.062 4.062 3 N -0.251 5.251 4 C -0.190 4.190 5 C -0.145 4.145 6 N -0.137 5.137 7 C 0.002 3.998 8 C -0.130 4.130 9 H 0.122 0.878 10 C 0.334 3.666 11 O -0.454 6.454 12 N -0.371 5.371 13 C 0.008 3.992 14 C -0.101 4.101 15 C 0.005 3.995 16 C -0.150 4.150 17 C 0.059 3.941 18 N -0.351 5.351 19 C -0.370 4.370 20 H 0.094 0.906 21 C -0.253 4.253 22 N -0.595 5.595 23 Si 0.800 3.200 24 H -0.213 1.213 25 H -0.221 1.221 26 H -0.198 1.198 27 C 0.034 3.966 28 C -0.140 4.140 29 C -0.076 4.076 30 H 0.110 0.890 31 H 0.111 0.889 32 H 0.110 0.890 33 H 0.200 0.800 34 H 0.112 0.888 35 H 0.134 0.866 36 H 0.095 0.905 37 H 0.139 0.861 38 H 0.139 0.861 39 H 0.093 0.907 40 H 0.097 0.903 41 H 0.115 0.885 42 H 0.034 0.966 43 H 0.022 0.978 44 H 0.056 0.944 45 H 0.050 0.950 46 H 0.040 0.960 47 H 0.097 0.903 48 H 0.088 0.912 49 H 0.111 0.889 50 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -4.290 10.943 -17.180 20.816 hybrid contribution 1.199 -1.034 1.276 2.033 sum -3.091 9.908 -15.904 18.991 Atomic orbital electron populations 1.20336 0.82576 1.05045 1.04628 1.23789 0.97015 0.80794 1.04634 1.70430 1.02946 1.29346 1.22405 1.22160 0.95007 0.92771 1.09046 1.21476 0.86334 0.95581 1.11099 1.45300 1.06463 1.07171 1.54805 1.21775 0.97058 0.76612 1.04375 1.21467 0.97255 0.90666 1.03585 0.87833 1.20087 0.76896 0.88004 0.81575 1.90700 1.54709 1.71724 1.28312 1.50297 1.56410 1.15957 1.14394 1.23081 1.00667 0.83248 0.92176 1.22370 0.97041 0.96164 0.94545 1.23178 1.01786 0.95892 0.78604 1.22513 0.96918 1.01700 0.93896 1.21002 0.82290 0.97813 0.93036 1.44823 1.02738 1.86896 1.00667 1.19359 0.88384 1.42973 0.86327 0.90625 1.25525 0.98089 1.02660 0.99066 1.70153 1.14704 1.58084 1.16545 0.85187 0.78495 0.77416 0.78891 1.21269 1.22124 1.19815 1.21217 0.94726 0.96890 0.83764 1.21488 0.95950 0.97014 0.99549 1.20311 0.92541 0.90684 1.04099 0.88979 0.88859 0.89036 0.80049 0.88824 0.86621 0.90539 0.86132 0.86106 0.90705 0.90255 0.88475 0.96572 0.97845 0.94413 0.95033 0.96014 0.90275 0.91220 0.88921 0.87308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.88 10.24 71.24 0.73 -0.15 16 2 C 0.20 4.28 7.94 138.25 1.10 5.37 16 3 N -0.53 -13.95 11.27 -188.78 -2.13 -16.08 16 4 C -0.04 -1.01 11.84 83.30 0.99 -0.02 16 5 C -0.03 -0.64 6.57 40.73 0.27 -0.37 16 6 N -0.45 -9.04 3.13 -500.15 -1.57 -10.60 16 7 C 0.12 2.00 5.88 86.48 0.51 2.51 16 8 C -0.11 -2.04 2.34 -11.41 -0.03 -2.07 16 9 H 0.10 1.97 7.76 -2.38 -0.02 1.95 16 10 C 0.55 13.12 7.10 87.66 0.62 13.74 16 11 O -0.57 -17.89 17.04 -3.03 -0.05 -17.94 16 12 N -0.64 -14.30 3.62 -863.43 -3.12 -17.43 16 13 C 0.13 2.80 8.23 85.90 0.71 3.51 16 14 C -0.10 -2.67 1.00 -51.99 -0.05 -2.72 16 15 C 0.13 2.79 7.73 85.90 0.66 3.46 16 16 C -0.11 -3.21 6.34 31.36 0.20 -3.01 16 17 C 0.18 8.14 5.39 86.81 0.47 8.60 16 18 N -0.62 -29.90 3.41 -692.38 -2.36 -32.26 16 19 C -0.24 -13.03 10.28 84.03 0.86 -12.17 16 20 H 0.08 3.98 7.83 -2.91 -0.02 3.95 16 21 C -0.06 -3.30 5.49 84.86 0.47 -2.83 16 22 N -0.95 -54.55 10.30 21.65 0.22 -54.32 16 23 Si 0.97 44.62 29.55 68.60 2.03 46.65 16 24 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 25 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 26 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 27 C 0.16 5.93 6.67 86.45 0.58 6.51 16 28 C -0.10 -1.89 4.68 30.83 0.14 -1.74 16 29 C -0.04 -0.61 6.31 30.05 0.19 -0.42 16 30 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.09 0.81 7.95 -2.38 -0.02 0.79 16 33 H 0.18 3.37 8.06 -2.91 -0.02 3.34 16 34 H 0.09 1.48 8.12 -2.39 -0.02 1.46 16 35 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.08 1.80 8.13 -2.39 -0.02 1.78 16 37 H 0.12 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.12 1.92 8.04 -2.39 -0.02 1.90 16 39 H 0.07 1.89 8.05 -2.39 -0.02 1.87 16 40 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 41 H 0.10 2.21 7.99 -2.39 -0.02 2.19 16 42 H 0.02 0.80 7.38 -2.39 -0.02 0.78 16 43 H 0.00 0.17 7.49 -2.39 -0.02 0.15 16 44 H 0.25 13.91 8.31 -92.71 -0.77 13.14 16 45 H 0.03 1.21 8.07 -2.39 -0.02 1.19 16 46 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 47 H 0.08 1.54 8.11 -2.38 -0.02 1.52 16 48 H 0.07 1.41 8.12 -2.38 -0.02 1.39 16 49 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 50 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -74.26 398.22 2.35 -71.91 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: 0.92 Total: 11.89 kcal Atomic # 6 Polarization: 9.77 SS G_CDS: 8.41 Total: 18.18 kcal Atomic # 7 Polarization: -121.74 SS G_CDS: -8.95 Total: -130.69 kcal Atomic # 8 Polarization: -17.89 SS G_CDS: -0.05 Total: -17.94 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -74.26 2.35 -71.91 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072921581.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.498 kcal (2) G-P(sol) polarization free energy of solvation -74.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.910 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds