Wall clock time and date at job start Wed Apr 1 2020 02:56:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30787 * 125.72410 * 2 1 4 4 C 1.34423 * 109.32324 * 179.97438 * 3 2 1 5 5 C 1.33861 * 107.79770 * 359.97438 * 4 3 2 6 6 N 1.34400 * 125.72240 * 179.69185 * 2 1 3 7 7 C 1.46473 * 128.44686 * 0.17773 * 6 2 1 8 8 C 1.53276 * 108.69540 * 162.67450 * 7 6 2 9 9 C 1.53123 * 109.70698 * 50.76769 * 8 7 6 10 10 H 1.08998 * 109.49309 * 50.03035 * 9 8 7 11 11 C 1.50692 * 109.49920 * 170.13438 * 9 8 7 12 12 O 1.21284 * 120.00433 * 359.97438 * 11 9 8 13 13 N 1.34779 * 119.99752 * 180.02562 * 11 9 8 14 14 C 1.47384 * 135.85616 * 359.62831 * 13 11 9 15 15 C 1.52067 * 87.41371 * 154.38740 * 14 13 11 16 16 C 1.47398 * 135.85032 * 179.97438 * 13 11 9 17 17 C 1.53507 * 117.21860 * 267.28170 * 15 14 13 18 18 C 1.54629 * 102.70237 * 262.93121 * 17 15 14 19 19 N 1.47142 * 107.37808 * 339.38060 * 18 17 15 20 20 C 1.36935 * 125.58091 * 179.12553 * 19 18 17 21 21 H 1.08000 * 120.00313 * 179.97438 * 20 19 18 22 22 C 1.38813 * 120.00226 * 359.97209 * 20 19 18 23 23 N 1.31623 * 119.99656 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00347 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47042 * 60.00210 * 24 22 20 26 26 H 1.48502 * 109.47055 * 180.02562 * 24 22 20 27 27 H 1.48506 * 109.46865 * 300.00147 * 24 22 20 28 28 C 1.47751 * 108.84146 * 359.08854 * 19 18 17 29 29 C 1.50711 * 128.68401 * 180.14119 * 5 4 3 30 30 H 1.09002 * 109.47152 * 90.02589 * 1 2 3 31 31 H 1.09001 * 109.46980 * 330.02689 * 1 2 3 32 32 H 1.09004 * 109.47113 * 210.02670 * 1 2 3 33 33 H 1.08002 * 126.10076 * 179.97438 * 4 3 2 34 34 H 1.09003 * 109.59947 * 282.44132 * 7 6 2 35 35 H 1.09001 * 109.59822 * 42.75095 * 7 6 2 36 36 H 1.08996 * 109.43562 * 170.83832 * 8 7 6 37 37 H 1.09002 * 109.43556 * 290.74080 * 8 7 6 38 38 H 1.09003 * 113.54867 * 269.00236 * 14 13 11 39 39 H 1.09001 * 113.54002 * 39.67791 * 14 13 11 40 40 H 1.08999 * 113.54607 * 320.32184 * 16 13 11 41 41 H 1.09005 * 113.54352 * 90.93109 * 16 13 11 42 42 H 1.09002 * 110.76299 * 21.23138 * 17 15 14 43 43 H 1.08994 * 110.77279 * 144.43795 * 17 15 14 44 44 H 1.08998 * 109.86765 * 98.83449 * 18 17 15 45 45 H 1.09006 * 109.86586 * 219.79884 * 18 17 15 46 46 H 0.97008 * 119.99841 * 179.97438 * 23 22 20 47 47 H 1.08996 * 110.40864 * 263.50796 * 28 19 18 48 48 H 1.08997 * 110.40807 * 141.07883 * 28 19 18 49 49 H 1.09001 * 109.74056 * 283.85852 * 29 5 4 50 50 H 1.08998 * 109.74628 * 44.57357 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2707 1.0618 0.0000 4 6 3.5602 0.6822 0.0006 5 6 3.5928 -0.6560 0.0015 6 7 2.2917 -1.0911 0.0059 7 6 1.8922 -2.5003 0.0099 8 6 3.0927 -3.3526 -0.4164 9 6 4.3185 -2.9722 0.4186 10 1 4.0540 -2.9767 1.4760 11 6 5.4237 -3.9663 0.1714 12 8 5.2491 -4.8889 -0.5963 13 7 6.6059 -3.8308 0.8044 14 6 7.1864 -2.8793 1.7686 15 6 8.1048 -4.0038 2.2206 16 6 7.8830 -4.5664 0.8286 17 6 7.6339 -4.8630 3.4023 18 6 8.3633 -4.2180 4.6036 19 7 9.5068 -3.4620 4.0690 20 6 10.3958 -2.7312 4.8111 21 1 11.2060 -2.2095 4.3234 22 6 10.2556 -2.6607 6.1904 23 7 9.2685 -3.2968 6.7848 24 14 11.4679 -1.6632 7.2027 25 1 11.4287 -0.2447 6.7653 26 1 11.1016 -1.7490 8.6393 27 1 12.8375 -2.2035 7.0084 28 6 9.5395 -3.6212 2.6004 29 6 4.7919 -1.5690 0.0053 30 1 -0.3633 -0.0005 -1.0277 31 1 -0.3633 0.8902 0.5134 32 1 -0.3633 -0.8898 0.5143 33 1 4.4171 1.3397 0.0003 34 1 1.5771 -2.7881 1.0129 35 1 1.0687 -2.6488 -0.6887 36 1 2.8620 -4.4067 -0.2625 37 1 3.3050 -3.1782 -1.4713 38 1 7.7133 -2.0492 1.2979 39 1 6.4838 -2.5539 2.5358 40 1 7.7620 -5.6496 0.8111 41 1 8.6047 -4.2101 0.0936 42 1 6.5529 -4.7935 3.5240 43 1 7.9406 -5.9008 3.2722 44 1 7.6869 -3.5441 5.1293 45 1 8.7150 -4.9940 5.2835 46 1 9.1708 -3.2479 7.7487 47 1 10.2316 -4.4150 2.3195 48 1 9.8217 -2.6830 2.1226 49 1 5.2364 -1.5972 -0.9896 50 1 5.5257 -1.2102 0.7271 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072983017.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:56:37 Heat of formation + Delta-G solvation = 88.681840 kcal Electronic energy + Delta-G solvation = -30639.582873 eV Core-core repulsion = 26669.611767 eV Total energy + Delta-G solvation = -3969.971106 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.60092 -40.82160 -38.84208 -36.41952 -35.72469 -33.71435 -32.26568 -31.49391 -30.16896 -29.51114 -28.79230 -27.01584 -26.08588 -25.65069 -24.55255 -23.83674 -22.48713 -20.89317 -20.36144 -19.58457 -19.02549 -18.40261 -17.12273 -16.96356 -16.69328 -16.31084 -15.79242 -15.69785 -14.85566 -14.64271 -14.42456 -14.36679 -14.22762 -13.95054 -13.82558 -13.53618 -13.25467 -13.18460 -13.02265 -12.66793 -12.51126 -12.43434 -12.14970 -12.04198 -11.94414 -11.88466 -11.48055 -11.35495 -11.05735 -10.95219 -10.72036 -10.50393 -10.28414 -10.18180 -10.10432 -9.91336 -9.73191 -9.70502 -9.60496 -8.65840 -8.64237 -8.36818 -6.89356 -5.75979 -3.09885 1.82845 2.48871 2.53418 2.77334 2.96606 3.37989 3.42656 3.43699 3.96612 4.16346 4.23594 4.26904 4.41236 4.45896 4.54320 4.63608 4.76448 4.85468 4.88315 4.98308 5.02136 5.17285 5.18426 5.24138 5.35562 5.37116 5.43377 5.46426 5.48512 5.55030 5.59731 5.61931 5.70012 5.72197 5.75940 5.76869 5.84132 6.09558 6.15936 6.18666 6.39596 6.44063 6.59096 6.59448 6.64469 7.01396 7.50076 7.54808 7.72722 7.77107 7.92702 8.07163 8.19767 9.16617 9.76719 10.41763 11.35501 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.013105 B = 0.002661 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2136.026408 B =10518.714002 C =11819.358211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.204 3.796 3 N -0.493 5.493 4 C -0.018 4.018 5 C -0.022 4.022 6 N -0.453 5.453 7 C 0.103 3.897 8 C -0.113 4.113 9 C -0.105 4.105 10 H 0.102 0.898 11 C 0.548 3.452 12 O -0.548 6.548 13 N -0.640 5.640 14 C 0.118 3.882 15 C -0.105 4.105 16 C 0.119 3.881 17 C -0.117 4.117 18 C 0.180 3.820 19 N -0.604 5.604 20 C -0.230 4.230 21 H 0.078 0.922 22 C -0.007 4.007 23 N -0.922 5.922 24 Si 0.912 3.088 25 H -0.285 1.285 26 H -0.291 1.291 27 H -0.285 1.285 28 C 0.153 3.847 29 C -0.034 4.034 30 H 0.078 0.922 31 H 0.089 0.911 32 H 0.071 0.929 33 H 0.171 0.829 34 H 0.087 0.913 35 H 0.095 0.905 36 H 0.098 0.902 37 H 0.080 0.920 38 H 0.089 0.911 39 H 0.081 0.919 40 H 0.077 0.923 41 H 0.085 0.915 42 H 0.059 0.941 43 H 0.063 0.937 44 H 0.046 0.954 45 H 0.044 0.956 46 H 0.253 0.747 47 H 0.027 0.973 48 H 0.043 0.957 49 H 0.086 0.914 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.050 0.991 -14.587 20.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.058 4.058 3 N -0.213 5.213 4 C -0.165 4.165 5 C -0.136 4.136 6 N -0.137 5.137 7 C -0.019 4.019 8 C -0.151 4.151 9 C -0.127 4.127 10 H 0.120 0.880 11 C 0.337 3.663 12 O -0.426 6.426 13 N -0.374 5.374 14 C -0.004 4.004 15 C -0.107 4.107 16 C -0.004 4.004 17 C -0.155 4.155 18 C 0.055 3.945 19 N -0.331 5.331 20 C -0.358 4.358 21 H 0.096 0.904 22 C -0.203 4.203 23 N -0.569 5.569 24 Si 0.742 3.258 25 H -0.211 1.211 26 H -0.216 1.216 27 H -0.212 1.212 28 C 0.027 3.973 29 C -0.073 4.073 30 H 0.097 0.903 31 H 0.108 0.892 32 H 0.090 0.910 33 H 0.188 0.812 34 H 0.105 0.895 35 H 0.113 0.887 36 H 0.117 0.883 37 H 0.099 0.901 38 H 0.107 0.893 39 H 0.099 0.901 40 H 0.095 0.905 41 H 0.103 0.897 42 H 0.078 0.922 43 H 0.082 0.918 44 H 0.065 0.935 45 H 0.062 0.938 46 H 0.063 0.937 47 H 0.044 0.956 48 H 0.061 0.939 49 H 0.104 0.896 50 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -15.680 1.193 -14.853 21.631 hybrid contribution 0.990 -0.285 0.678 1.233 sum -14.691 0.908 -14.175 20.435 Atomic orbital electron populations 1.20156 0.85019 1.03957 1.03340 1.23109 0.95581 0.81276 1.05793 1.70454 1.01984 1.28061 1.20763 1.21841 0.94858 0.91864 1.07937 1.20963 0.85265 0.95313 1.12070 1.45293 1.06300 1.07220 1.54914 1.22033 0.98765 0.77689 1.03391 1.21688 0.91905 1.00695 1.00783 1.21390 0.94308 0.94481 1.02492 0.87960 1.19836 0.81829 0.85659 0.78964 1.90694 1.81178 1.34180 1.36557 1.49830 1.11698 1.31023 1.44820 1.22950 0.94392 0.93418 0.89640 1.22178 0.98223 0.96331 0.93920 1.22792 0.83014 0.98325 0.96254 1.22462 0.99679 0.98082 0.95270 1.21212 0.88277 0.94450 0.90549 1.44521 1.31161 1.57765 0.99626 1.18993 1.05276 1.22817 0.88692 0.90425 1.24797 0.98560 1.00461 0.96512 1.69948 1.31842 1.46197 1.08955 0.86205 0.80422 0.79798 0.79357 1.21120 1.21634 1.21176 1.21140 0.91115 0.98035 0.87056 1.20223 0.93513 0.90191 1.03329 0.90309 0.89174 0.90977 0.81206 0.89483 0.88721 0.88312 0.90137 0.89265 0.90061 0.90452 0.89681 0.92239 0.91806 0.93541 0.93807 0.93682 0.95573 0.93885 0.89554 0.88674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.45 10.24 36.01 0.37 -0.08 16 2 C 0.20 2.24 7.94 -155.76 -1.24 1.01 16 3 N -0.49 -6.67 11.27 -11.02 -0.12 -6.79 16 4 C -0.02 -0.22 11.84 -17.95 -0.21 -0.43 16 5 C -0.02 -0.25 6.57 -81.72 -0.54 -0.79 16 6 N -0.45 -4.62 3.13 -109.43 -0.34 -4.96 16 7 C 0.10 0.75 6.60 -3.91 -0.03 0.73 16 8 C -0.11 -0.99 4.65 -26.52 -0.12 -1.11 16 9 C -0.11 -1.08 2.44 -91.33 -0.22 -1.30 16 10 H 0.10 1.04 8.12 -51.93 -0.42 0.62 16 11 C 0.55 7.26 7.38 -10.99 -0.08 7.18 16 12 O -0.55 -8.97 16.59 5.55 0.09 -8.88 16 13 N -0.64 -8.32 3.65 -185.74 -0.68 -9.00 16 14 C 0.12 1.54 6.31 -7.34 -0.05 1.49 16 15 C -0.10 -1.58 1.06 -155.23 -0.16 -1.74 16 16 C 0.12 1.55 8.02 -7.48 -0.06 1.49 16 17 C -0.12 -2.00 6.40 -25.61 -0.16 -2.16 16 18 C 0.18 4.07 5.39 -2.84 -0.02 4.05 16 19 N -0.60 -14.27 3.41 -170.54 -0.58 -14.86 16 20 C -0.23 -6.06 10.28 -15.06 -0.15 -6.22 16 21 H 0.08 1.97 7.83 -52.49 -0.41 1.56 16 22 C -0.01 -0.19 5.49 -17.43 -0.10 -0.28 16 23 N -0.92 -26.15 10.30 55.49 0.57 -25.58 16 24 Si 0.91 21.43 29.55 -169.99 -5.02 16.41 16 25 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 26 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 27 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 28 C 0.15 2.79 6.70 -3.22 -0.02 2.77 16 29 C -0.03 -0.34 5.34 -27.49 -0.15 -0.48 16 30 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.35 7.95 -51.93 -0.41 -0.06 16 33 H 0.17 1.78 8.06 -52.49 -0.42 1.35 16 34 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.10 0.87 7.77 -51.93 -0.40 0.46 16 37 H 0.08 0.77 8.11 -51.93 -0.42 0.35 16 38 H 0.09 1.04 8.06 -51.93 -0.42 0.62 16 39 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 40 H 0.08 1.03 8.13 -51.93 -0.42 0.61 16 41 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.06 0.96 8.07 -51.93 -0.42 0.54 16 43 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.05 1.17 7.39 -51.93 -0.38 0.79 16 45 H 0.04 1.12 7.49 -51.93 -0.39 0.73 16 46 H 0.25 7.03 8.31 -40.82 -0.34 6.70 16 47 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.04 0.74 8.00 -51.93 -0.42 0.33 16 49 H 0.09 0.85 8.12 -51.93 -0.42 0.42 16 50 H 0.09 0.91 6.82 -51.93 -0.35 0.55 16 LS Contribution 395.23 15.07 5.96 5.96 Total: -1.00 -33.38 395.23 -11.30 -44.68 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -8.23 Total: -1.09 kcal Atomic # 6 Polarization: 7.05 SS G_CDS: -2.94 Total: 4.11 kcal Atomic # 7 Polarization: -60.03 SS G_CDS: -1.15 Total: -61.19 kcal Atomic # 8 Polarization: -8.97 SS G_CDS: 0.09 Total: -8.88 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.38 -11.30 -44.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072983017.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.361 kcal (2) G-P(sol) polarization free energy of solvation -33.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.679 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds