Wall clock time and date at job start Wed Apr 1 2020 02:56:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30787 * 125.72410 * 2 1 4 4 C 1.34423 * 109.32324 * 179.97438 * 3 2 1 5 5 C 1.33861 * 107.79770 * 359.97438 * 4 3 2 6 6 N 1.34400 * 125.72240 * 179.69185 * 2 1 3 7 7 C 1.46473 * 128.44686 * 0.17773 * 6 2 1 8 8 C 1.53276 * 108.69540 * 162.67450 * 7 6 2 9 9 C 1.53123 * 109.70698 * 50.76769 * 8 7 6 10 10 H 1.08998 * 109.49309 * 50.03035 * 9 8 7 11 11 C 1.50692 * 109.49920 * 170.13438 * 9 8 7 12 12 O 1.21284 * 120.00433 * 359.97438 * 11 9 8 13 13 N 1.34779 * 119.99752 * 180.02562 * 11 9 8 14 14 C 1.47384 * 135.85616 * 359.62831 * 13 11 9 15 15 C 1.52067 * 87.41371 * 154.38740 * 14 13 11 16 16 C 1.47398 * 135.85032 * 179.97438 * 13 11 9 17 17 C 1.53507 * 117.21860 * 267.28170 * 15 14 13 18 18 C 1.54629 * 102.70237 * 262.93121 * 17 15 14 19 19 N 1.47142 * 107.37808 * 339.38060 * 18 17 15 20 20 C 1.36935 * 125.58091 * 179.12553 * 19 18 17 21 21 H 1.08000 * 120.00313 * 179.97438 * 20 19 18 22 22 C 1.38813 * 120.00226 * 359.97209 * 20 19 18 23 23 N 1.31623 * 119.99656 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00347 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47042 * 60.00210 * 24 22 20 26 26 H 1.48502 * 109.47055 * 180.02562 * 24 22 20 27 27 H 1.48506 * 109.46865 * 300.00147 * 24 22 20 28 28 C 1.47751 * 108.84146 * 359.08854 * 19 18 17 29 29 C 1.50711 * 128.68401 * 180.14119 * 5 4 3 30 30 H 1.09002 * 109.47152 * 90.02589 * 1 2 3 31 31 H 1.09001 * 109.46980 * 330.02689 * 1 2 3 32 32 H 1.09004 * 109.47113 * 210.02670 * 1 2 3 33 33 H 1.08002 * 126.10076 * 179.97438 * 4 3 2 34 34 H 1.09003 * 109.59947 * 282.44132 * 7 6 2 35 35 H 1.09001 * 109.59822 * 42.75095 * 7 6 2 36 36 H 1.08996 * 109.43562 * 170.83832 * 8 7 6 37 37 H 1.09002 * 109.43556 * 290.74080 * 8 7 6 38 38 H 1.09003 * 113.54867 * 269.00236 * 14 13 11 39 39 H 1.09001 * 113.54002 * 39.67791 * 14 13 11 40 40 H 1.08999 * 113.54607 * 320.32184 * 16 13 11 41 41 H 1.09005 * 113.54352 * 90.93109 * 16 13 11 42 42 H 1.09002 * 110.76299 * 21.23138 * 17 15 14 43 43 H 1.08994 * 110.77279 * 144.43795 * 17 15 14 44 44 H 1.08998 * 109.86765 * 98.83449 * 18 17 15 45 45 H 1.09006 * 109.86586 * 219.79884 * 18 17 15 46 46 H 0.97008 * 119.99841 * 179.97438 * 23 22 20 47 47 H 1.08996 * 110.40864 * 263.50796 * 28 19 18 48 48 H 1.08997 * 110.40807 * 141.07883 * 28 19 18 49 49 H 1.09001 * 109.74056 * 283.85852 * 29 5 4 50 50 H 1.08998 * 109.74628 * 44.57357 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2707 1.0618 0.0000 4 6 3.5602 0.6822 0.0006 5 6 3.5928 -0.6560 0.0015 6 7 2.2917 -1.0911 0.0059 7 6 1.8922 -2.5003 0.0099 8 6 3.0927 -3.3526 -0.4164 9 6 4.3185 -2.9722 0.4186 10 1 4.0540 -2.9767 1.4760 11 6 5.4237 -3.9663 0.1714 12 8 5.2491 -4.8889 -0.5963 13 7 6.6059 -3.8308 0.8044 14 6 7.1864 -2.8793 1.7686 15 6 8.1048 -4.0038 2.2206 16 6 7.8830 -4.5664 0.8286 17 6 7.6339 -4.8630 3.4023 18 6 8.3633 -4.2180 4.6036 19 7 9.5068 -3.4620 4.0690 20 6 10.3958 -2.7312 4.8111 21 1 11.2060 -2.2095 4.3234 22 6 10.2556 -2.6607 6.1904 23 7 9.2685 -3.2968 6.7848 24 14 11.4679 -1.6632 7.2027 25 1 11.4287 -0.2447 6.7653 26 1 11.1016 -1.7490 8.6393 27 1 12.8375 -2.2035 7.0084 28 6 9.5395 -3.6212 2.6004 29 6 4.7919 -1.5690 0.0053 30 1 -0.3633 -0.0005 -1.0277 31 1 -0.3633 0.8902 0.5134 32 1 -0.3633 -0.8898 0.5143 33 1 4.4171 1.3397 0.0003 34 1 1.5771 -2.7881 1.0129 35 1 1.0687 -2.6488 -0.6887 36 1 2.8620 -4.4067 -0.2625 37 1 3.3050 -3.1782 -1.4713 38 1 7.7133 -2.0492 1.2979 39 1 6.4838 -2.5539 2.5358 40 1 7.7620 -5.6496 0.8111 41 1 8.6047 -4.2101 0.0936 42 1 6.5529 -4.7935 3.5240 43 1 7.9406 -5.9008 3.2722 44 1 7.6869 -3.5441 5.1293 45 1 8.7150 -4.9940 5.2835 46 1 9.1708 -3.2479 7.7487 47 1 10.2316 -4.4150 2.3195 48 1 9.8217 -2.6830 2.1226 49 1 5.2364 -1.5972 -0.9896 50 1 5.5257 -1.2102 0.7271 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001072983017.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:56:36 Heat of formation + Delta-G solvation = 69.314576 kcal Electronic energy + Delta-G solvation = -30640.422701 eV Core-core repulsion = 26669.611767 eV Total energy + Delta-G solvation = -3970.810934 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.38896 -41.96486 -39.97036 -37.44359 -37.12640 -34.51880 -34.02048 -32.27708 -31.29314 -30.72942 -30.15242 -28.01410 -27.21652 -26.95939 -25.57106 -25.17174 -23.38891 -22.12365 -21.65305 -20.59628 -19.90751 -19.65396 -18.58583 -18.02138 -17.74402 -17.22020 -16.82404 -16.74233 -16.58872 -15.93991 -15.61256 -15.51621 -15.09282 -14.96228 -14.71145 -14.52808 -14.20570 -14.11456 -13.96061 -13.77727 -13.67962 -13.63217 -13.29039 -13.16619 -12.91133 -12.86247 -12.80835 -12.69005 -12.24905 -12.24065 -12.10599 -12.06196 -11.88466 -11.80443 -11.65396 -11.20571 -11.04102 -10.73960 -10.64766 -10.48080 -9.74380 -9.18329 -8.83832 -7.80460 -5.14738 1.04305 1.49361 1.49870 1.51849 1.57838 1.72786 1.83959 2.11326 2.53293 3.09267 3.30892 3.41132 3.45644 3.50948 3.60148 3.61020 3.71637 3.84322 3.88152 4.06150 4.10011 4.20969 4.23662 4.29345 4.35331 4.47847 4.55858 4.58237 4.60655 4.66221 4.66962 4.71634 4.73840 4.74984 4.84661 4.87228 4.92434 4.95515 5.03987 5.07055 5.08021 5.18991 5.22294 5.39522 5.51785 5.69245 5.77450 5.81857 6.23834 6.29569 6.67731 7.03117 7.11202 7.15036 7.82891 8.46626 9.29677 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.013105 B = 0.002661 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2136.026408 B =10518.714002 C =11819.358211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.200 3.800 3 N -0.535 5.535 4 C -0.043 4.043 5 C -0.028 4.028 6 N -0.454 5.454 7 C 0.103 3.897 8 C -0.108 4.108 9 C -0.099 4.099 10 H 0.107 0.893 11 C 0.549 3.451 12 O -0.579 6.579 13 N -0.638 5.638 14 C 0.125 3.875 15 C -0.100 4.100 16 C 0.125 3.875 17 C -0.102 4.102 18 C 0.190 3.810 19 N -0.625 5.625 20 C -0.235 4.235 21 H 0.086 0.914 22 C -0.067 4.067 23 N -0.952 5.952 24 Si 0.973 3.027 25 H -0.276 1.276 26 H -0.300 1.300 27 H -0.279 1.279 28 C 0.151 3.849 29 C -0.026 4.026 30 H 0.093 0.907 31 H 0.088 0.912 32 H 0.095 0.905 33 H 0.176 0.824 34 H 0.103 0.897 35 H 0.122 0.878 36 H 0.101 0.899 37 H 0.071 0.929 38 H 0.110 0.890 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.108 0.892 42 H 0.070 0.930 43 H 0.072 0.928 44 H 0.012 0.988 45 H 0.002 0.998 46 H 0.244 0.756 47 H 0.033 0.967 48 H 0.058 0.942 49 H 0.088 0.912 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.843 1.040 -16.311 22.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.062 4.062 3 N -0.256 5.256 4 C -0.189 4.189 5 C -0.142 4.142 6 N -0.138 5.138 7 C -0.018 4.018 8 C -0.146 4.146 9 C -0.120 4.120 10 H 0.125 0.875 11 C 0.339 3.661 12 O -0.460 6.460 13 N -0.371 5.371 14 C 0.003 3.997 15 C -0.102 4.102 16 C 0.003 3.997 17 C -0.140 4.140 18 C 0.065 3.935 19 N -0.351 5.351 20 C -0.364 4.364 21 H 0.104 0.896 22 C -0.260 4.260 23 N -0.602 5.602 24 Si 0.802 3.198 25 H -0.202 1.202 26 H -0.226 1.226 27 H -0.205 1.205 28 C 0.025 3.975 29 C -0.064 4.064 30 H 0.112 0.888 31 H 0.107 0.893 32 H 0.114 0.886 33 H 0.194 0.806 34 H 0.121 0.879 35 H 0.140 0.860 36 H 0.119 0.881 37 H 0.090 0.910 38 H 0.128 0.872 39 H 0.097 0.903 40 H 0.095 0.905 41 H 0.126 0.874 42 H 0.089 0.911 43 H 0.090 0.910 44 H 0.030 0.970 45 H 0.020 0.980 46 H 0.053 0.947 47 H 0.051 0.949 48 H 0.076 0.924 49 H 0.106 0.894 50 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -16.460 1.238 -16.616 23.421 hybrid contribution 1.259 -0.330 1.176 1.755 sum -15.200 0.908 -15.440 21.686 Atomic orbital electron populations 1.20330 0.82302 1.05091 1.04629 1.23839 0.97096 0.80952 1.04325 1.70423 1.02745 1.29804 1.22613 1.22105 0.95078 0.92808 1.08944 1.21087 0.86151 0.95129 1.11846 1.45491 1.05823 1.08213 1.54266 1.22258 0.98699 0.75704 1.05117 1.21639 0.91846 1.01111 0.99963 1.21380 0.93886 0.93732 1.03020 0.87546 1.20261 0.82039 0.85553 0.78201 1.90684 1.81653 1.35632 1.37986 1.49804 1.11815 1.30887 1.44642 1.22956 0.93861 0.93247 0.89616 1.21999 0.96495 0.97362 0.94340 1.22788 0.83548 0.98440 0.94928 1.22245 0.99592 0.98397 0.93740 1.20903 0.87878 0.92676 0.92068 1.44809 1.30835 1.57374 1.02127 1.19418 1.05559 1.22164 0.89221 0.89606 1.25586 1.00433 1.02147 0.97832 1.70175 1.33647 1.47977 1.08393 0.85224 0.78550 0.78783 0.77219 1.20180 1.22607 1.20512 1.21318 0.93242 0.98957 0.83950 1.20166 0.93135 0.89633 1.03491 0.88835 0.89286 0.88596 0.80644 0.87893 0.86046 0.88091 0.90998 0.87205 0.90348 0.90462 0.87363 0.91099 0.90983 0.96974 0.97953 0.94652 0.94947 0.92376 0.89410 0.88342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.73 10.24 71.24 0.73 0.00 16 2 C 0.20 4.09 7.94 138.25 1.10 5.19 16 3 N -0.54 -14.27 11.27 -188.78 -2.13 -16.40 16 4 C -0.04 -1.04 11.84 83.30 0.99 -0.06 16 5 C -0.03 -0.58 6.57 40.73 0.27 -0.32 16 6 N -0.45 -8.37 3.13 -500.12 -1.57 -9.93 16 7 C 0.10 1.19 6.60 86.48 0.57 1.76 16 8 C -0.11 -1.65 4.65 30.73 0.14 -1.50 16 9 C -0.10 -1.82 2.44 -11.25 -0.03 -1.85 16 10 H 0.11 1.92 8.12 -2.39 -0.02 1.90 16 11 C 0.55 13.37 7.38 87.65 0.65 14.01 16 12 O -0.58 -17.89 16.59 -3.04 -0.05 -17.94 16 13 N -0.64 -14.97 3.65 -859.95 -3.14 -18.11 16 14 C 0.13 2.95 6.31 83.76 0.53 3.48 16 15 C -0.10 -2.82 1.06 -52.63 -0.06 -2.87 16 16 C 0.13 2.91 8.02 83.66 0.67 3.58 16 17 C -0.10 -3.40 6.40 31.32 0.20 -3.20 16 18 C 0.19 8.82 5.39 86.81 0.47 9.29 16 19 N -0.62 -29.57 3.41 -693.46 -2.36 -31.94 16 20 C -0.23 -12.40 10.28 84.03 0.86 -11.54 16 21 H 0.09 4.28 7.83 -2.91 -0.02 4.26 16 22 C -0.07 -3.70 5.49 84.86 0.47 -3.24 16 23 N -0.95 -55.96 10.30 21.65 0.22 -55.74 16 24 Si 0.97 44.56 29.55 68.60 2.03 46.59 16 25 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 26 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 27 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 28 C 0.15 5.21 6.70 86.23 0.58 5.79 16 29 C -0.03 -0.47 5.34 30.10 0.16 -0.30 16 30 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.10 0.60 7.95 -2.38 -0.02 0.58 16 33 H 0.18 3.73 8.06 -2.91 -0.02 3.70 16 34 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.10 1.54 7.77 -2.39 -0.02 1.52 16 37 H 0.07 1.24 8.11 -2.39 -0.02 1.22 16 38 H 0.11 2.20 8.06 -2.39 -0.02 2.18 16 39 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.08 1.85 8.13 -2.39 -0.02 1.83 16 41 H 0.11 2.08 8.14 -2.38 -0.02 2.06 16 42 H 0.07 2.21 8.07 -2.39 -0.02 2.19 16 43 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 44 H 0.01 0.63 7.39 -2.39 -0.02 0.62 16 45 H 0.00 0.12 7.49 -2.38 -0.02 0.10 16 46 H 0.24 14.14 8.31 -92.70 -0.77 13.37 16 47 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 48 H 0.06 1.85 8.00 -2.39 -0.02 1.83 16 49 H 0.09 1.57 8.12 -2.39 -0.02 1.55 16 50 H 0.10 1.70 6.82 -2.39 -0.02 1.68 16 Total: -1.00 -74.48 395.23 2.22 -72.26 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: 0.92 Total: 12.97 kcal Atomic # 6 Polarization: 9.93 SS G_CDS: 8.29 Total: 18.23 kcal Atomic # 7 Polarization: -123.14 SS G_CDS: -8.97 Total: -132.11 kcal Atomic # 8 Polarization: -17.89 SS G_CDS: -0.05 Total: -17.94 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -74.48 2.22 -72.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072983017.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.572 kcal (2) G-P(sol) polarization free energy of solvation -74.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.258 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds