Wall clock time and date at job start Wed Apr 1 2020 03:36:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50696 * 109.47018 * 2 1 4 4 N 1.32152 * 120.53885 * 270.28408 * 3 2 1 5 5 C 1.31864 * 120.96880 * 180.33563 * 4 3 2 6 6 N 1.31867 * 122.09562 * 359.65383 * 5 4 3 7 7 C 1.32145 * 120.96871 * 0.02819 * 6 5 4 8 8 C 1.50703 * 120.54105 * 179.97438 * 7 6 5 9 9 C 1.52998 * 109.46857 * 270.01723 * 8 7 6 10 10 C 1.39949 * 118.92487 * 359.97438 * 7 6 5 11 11 C 1.47826 * 120.94372 * 180.02562 * 10 7 6 12 12 O 1.21550 * 120.00158 * 90.00539 * 11 10 7 13 13 N 1.34787 * 119.99797 * 270.00348 * 11 10 7 14 14 C 1.47890 * 134.33938 * 180.02562 * 13 11 10 15 15 C 1.52375 * 85.58710 * 156.51305 * 14 13 11 16 16 C 1.47891 * 134.34304 * 359.97438 * 13 11 10 17 17 C 1.53654 * 116.38842 * 141.35649 * 15 14 13 18 18 C 1.54609 * 102.72895 * 95.48499 * 17 15 14 19 19 N 1.47130 * 107.36734 * 20.75555 * 18 17 15 20 20 C 1.36932 * 125.59179 * 180.93239 * 19 18 17 21 21 H 1.07997 * 120.00597 * 185.89238 * 20 19 18 22 22 C 1.38815 * 119.99516 * 5.88157 * 20 19 18 23 23 N 1.31622 * 120.00198 * 7.35497 * 22 20 19 24 24 Si 1.86807 * 119.99795 * 187.07179 * 22 20 19 25 25 H 1.48492 * 109.47246 * 265.29506 * 24 22 20 26 26 H 1.48503 * 109.46936 * 25.29435 * 24 22 20 27 27 H 1.48497 * 109.46780 * 145.28985 * 24 22 20 28 28 C 1.47727 * 108.82554 * 1.18962 * 19 18 17 29 29 H 1.08999 * 109.46960 * 60.00074 * 1 2 3 30 30 H 1.09001 * 109.47152 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46960 * 300.00308 * 1 2 3 32 32 H 1.08998 * 109.46960 * 239.99692 * 2 1 3 33 33 H 1.08999 * 109.46960 * 119.99926 * 2 1 3 34 34 H 1.08003 * 118.95081 * 179.68014 * 5 4 3 35 35 H 1.09001 * 109.47077 * 30.01807 * 8 7 6 36 36 H 1.09001 * 109.47312 * 150.01716 * 8 7 6 37 37 H 1.09003 * 109.47061 * 179.97438 * 9 8 7 38 38 H 1.09001 * 109.47345 * 299.99920 * 9 8 7 39 39 H 1.09001 * 109.47165 * 59.99903 * 9 8 7 40 40 H 1.08997 * 113.85511 * 42.34332 * 14 13 11 41 41 H 1.08998 * 113.96738 * 270.69541 * 14 13 11 42 42 H 1.08992 * 113.85132 * 89.31922 * 16 13 11 43 43 H 1.08997 * 113.84944 * 317.65338 * 16 13 11 44 44 H 1.09008 * 110.75718 * 337.17860 * 17 15 14 45 45 H 1.08990 * 110.76248 * 213.79501 * 17 15 14 46 46 H 1.09005 * 109.86542 * 261.30935 * 18 17 15 47 47 H 1.09001 * 109.97505 * 140.26834 * 18 17 15 48 48 H 0.97001 * 119.99956 * 179.71985 * 23 22 20 49 49 H 1.09003 * 110.40101 * 96.07132 * 28 19 18 50 50 H 1.08995 * 110.40610 * 218.48669 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2508 2.0558 -1.1382 5 6 2.6965 3.2967 -1.1481 6 7 2.9382 3.9634 -0.0363 7 6 2.7415 3.4074 1.1463 8 6 3.0214 4.1779 2.4108 9 6 4.4738 3.9514 2.8350 10 6 2.2690 2.0914 1.2054 11 6 2.0328 1.4262 2.5042 12 8 0.9449 1.5085 3.0402 13 7 3.0237 0.7285 3.0941 14 6 3.1393 -0.0404 4.3521 15 6 4.2758 -0.7804 3.6575 16 6 4.4276 0.4265 2.7405 17 6 5.4919 -1.1353 4.5271 18 6 5.1878 -2.5876 4.9615 19 7 4.2159 -3.1381 4.0039 20 6 3.6764 -4.3958 4.0500 21 1 3.0423 -4.7413 3.2470 22 6 3.9449 -5.2270 5.1289 23 7 4.5957 -4.7602 6.1734 24 14 3.3755 -7.0060 5.1018 25 1 2.0640 -7.1165 5.7894 26 1 3.2365 -7.4598 3.6947 27 1 4.3736 -7.8557 5.7996 28 6 3.9220 -2.1137 2.9809 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.8688 3.7828 -2.0971 35 1 2.8563 5.2406 2.2328 36 1 2.3542 3.8340 3.2011 37 1 4.6765 4.5091 3.7494 38 1 4.6389 2.8888 3.0130 39 1 5.1411 4.2954 2.0447 40 1 2.2730 -0.6656 4.5678 41 1 3.4587 0.5552 5.2073 42 1 5.1418 1.1668 3.1007 43 1 4.5719 0.1676 1.6916 44 1 5.5521 -0.4773 5.3941 45 1 6.4108 -1.0912 3.9427 46 1 4.7626 -2.5927 5.9652 47 1 6.1022 -3.1808 4.9437 48 1 4.7797 -5.3399 6.9290 49 1 4.5408 -2.2705 2.0974 50 1 2.8653 -2.1350 2.7144 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072989089.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:36:46 Heat of formation + Delta-G solvation = 67.869686 kcal Electronic energy + Delta-G solvation = -31605.111217 eV Core-core repulsion = 27634.237628 eV Total energy + Delta-G solvation = -3970.873589 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.68671 -40.42785 -38.27111 -35.96937 -35.66470 -34.45600 -32.28769 -31.79687 -30.97967 -29.64929 -28.40482 -26.65841 -25.99114 -25.55470 -25.05171 -23.70284 -23.18527 -21.05752 -20.42368 -19.88609 -18.46489 -18.21375 -17.38095 -16.86303 -16.68272 -16.29673 -15.35817 -15.17329 -14.81962 -14.61865 -14.52629 -14.35085 -14.08824 -13.83459 -13.76486 -13.39489 -13.23272 -13.07039 -12.73035 -12.53322 -12.43389 -11.97043 -11.93669 -11.89646 -11.73982 -11.71722 -11.32659 -11.18551 -11.13338 -10.96153 -10.79579 -10.58621 -10.47832 -10.39750 -10.14010 -9.92712 -9.73998 -9.71077 -9.60021 -9.50841 -8.68819 -8.66029 -6.88233 -5.74592 -3.11014 0.43809 0.74550 2.42537 2.72463 3.37776 3.39063 3.43780 3.45205 3.67269 3.72527 3.96945 4.15275 4.41450 4.58257 4.64986 4.78407 4.83740 4.87263 4.94096 5.02864 5.10222 5.12401 5.22169 5.34295 5.37369 5.39400 5.46791 5.52863 5.59004 5.59478 5.62078 5.69704 5.78277 5.79919 5.86122 5.89925 5.92646 6.04671 6.08436 6.14383 6.15201 6.39237 6.42120 6.57817 6.62505 6.68706 7.41698 7.59385 7.62930 7.77481 7.78092 8.01910 8.21431 9.16171 9.76794 10.41512 11.34623 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.015436 B = 0.003218 C = 0.002894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.457108 B = 8698.730782 C = 9674.487221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.084 4.084 3 C 0.219 3.781 4 N -0.521 5.521 5 C 0.308 3.692 6 N -0.523 5.523 7 C 0.215 3.785 8 C -0.083 4.083 9 C -0.149 4.149 10 C -0.220 4.220 11 C 0.594 3.406 12 O -0.529 6.529 13 N -0.630 5.630 14 C 0.133 3.867 15 C -0.103 4.103 16 C 0.110 3.890 17 C -0.130 4.130 18 C 0.172 3.828 19 N -0.602 5.602 20 C -0.230 4.230 21 H 0.077 0.923 22 C -0.006 4.006 23 N -0.919 5.919 24 Si 0.910 3.090 25 H -0.289 1.289 26 H -0.281 1.281 27 H -0.290 1.290 28 C 0.162 3.838 29 H 0.058 0.942 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.094 0.906 33 H 0.089 0.911 34 H 0.200 0.800 35 H 0.092 0.908 36 H 0.086 0.914 37 H 0.070 0.930 38 H 0.061 0.939 39 H 0.062 0.938 40 H 0.090 0.910 41 H 0.087 0.913 42 H 0.090 0.910 43 H 0.079 0.921 44 H 0.065 0.935 45 H 0.063 0.937 46 H 0.065 0.935 47 H 0.030 0.970 48 H 0.252 0.748 49 H 0.025 0.975 50 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.215 17.299 -9.952 19.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.122 4.122 3 C 0.073 3.927 4 N -0.235 5.235 5 C 0.021 3.979 6 N -0.237 5.237 7 C 0.068 3.932 8 C -0.121 4.121 9 C -0.206 4.206 10 C -0.227 4.227 11 C 0.381 3.619 12 O -0.406 6.406 13 N -0.364 5.364 14 C 0.012 3.988 15 C -0.104 4.104 16 C -0.013 4.013 17 C -0.168 4.168 18 C 0.047 3.953 19 N -0.328 5.328 20 C -0.358 4.358 21 H 0.095 0.905 22 C -0.202 4.202 23 N -0.566 5.566 24 Si 0.740 3.260 25 H -0.216 1.216 26 H -0.206 1.206 27 H -0.216 1.216 28 C 0.035 3.965 29 H 0.077 0.923 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.112 0.888 33 H 0.107 0.893 34 H 0.216 0.784 35 H 0.111 0.889 36 H 0.105 0.895 37 H 0.089 0.911 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.108 0.892 41 H 0.105 0.895 42 H 0.107 0.893 43 H 0.097 0.903 44 H 0.084 0.916 45 H 0.082 0.918 46 H 0.083 0.917 47 H 0.048 0.952 48 H 0.062 0.938 49 H 0.042 0.958 50 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -0.376 17.705 -10.490 20.583 hybrid contribution -0.315 -1.189 0.607 1.372 sum -0.692 16.516 -9.883 19.260 Atomic orbital electron populations 1.21698 0.92845 1.03055 1.02635 1.20698 0.97666 0.89083 1.04780 1.21887 0.87847 0.96404 0.86574 1.68297 1.14831 1.10796 1.29544 1.25104 0.88864 0.87005 0.96951 1.68274 1.18692 1.38314 0.98396 1.21785 0.87474 0.89487 0.94433 1.20654 0.99044 1.00666 0.91733 1.21817 0.94054 1.02821 1.01940 1.21457 1.07669 0.97537 0.96085 1.17323 0.83694 0.77316 0.83561 1.90822 1.23778 1.60874 1.65115 1.50243 1.11742 1.50644 1.23817 1.23021 0.98627 0.90691 0.86506 1.22512 0.96639 0.94726 0.96567 1.23204 0.81802 0.95561 1.00685 1.22649 0.95507 1.00498 0.98194 1.21296 0.92698 0.86846 0.94459 1.44529 1.49364 1.11213 1.27728 1.19021 1.25017 0.87965 1.03776 0.90521 1.24786 1.00782 0.98630 0.96012 1.69940 1.45653 1.34478 1.06507 0.86135 0.77828 0.84588 0.77423 1.21610 1.20645 1.21643 1.21109 0.97876 0.85547 0.91937 0.92289 0.91070 0.91774 0.88773 0.89295 0.78355 0.88904 0.89515 0.91143 0.91975 0.91933 0.89156 0.89498 0.89251 0.90300 0.91584 0.91804 0.91717 0.95213 0.93754 0.95785 0.94136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 9.90 37.16 0.37 -1.33 16 2 C -0.08 -1.03 5.91 -27.88 -0.16 -1.19 16 3 C 0.22 2.85 6.12 -81.81 -0.50 2.34 16 4 N -0.52 -6.35 10.36 -10.48 -0.11 -6.46 16 5 C 0.31 3.27 12.27 -92.03 -1.13 2.14 16 6 N -0.52 -6.09 10.36 -10.48 -0.11 -6.20 16 7 C 0.21 2.62 6.12 -81.82 -0.50 2.12 16 8 C -0.08 -0.84 5.91 -27.88 -0.16 -1.01 16 9 C -0.15 -1.28 9.89 37.16 0.37 -0.91 16 10 C -0.22 -2.95 5.40 -104.69 -0.57 -3.52 16 11 C 0.59 8.87 4.74 -12.33 -0.06 8.81 16 12 O -0.53 -9.66 17.77 5.32 0.09 -9.56 16 13 N -0.63 -8.62 3.54 -188.07 -0.67 -9.28 16 14 C 0.13 1.96 8.16 -3.60 -0.03 1.93 16 15 C -0.10 -1.54 0.99 -154.74 -0.15 -1.69 16 16 C 0.11 1.31 7.21 -3.62 -0.03 1.28 16 17 C -0.13 -2.05 6.36 -25.55 -0.16 -2.21 16 18 C 0.17 3.81 5.47 -2.85 -0.02 3.79 16 19 N -0.60 -14.34 3.41 -170.35 -0.58 -14.92 16 20 C -0.23 -6.14 10.26 -15.06 -0.15 -6.30 16 21 H 0.08 2.00 7.84 -52.49 -0.41 1.59 16 22 C -0.01 -0.15 5.45 -17.43 -0.09 -0.25 16 23 N -0.92 -25.96 10.45 55.49 0.58 -25.38 16 24 Si 0.91 21.60 29.56 -169.99 -5.02 16.57 16 25 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 26 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 27 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 28 C 0.16 3.04 6.65 -3.04 -0.02 3.02 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.06 0.87 8.08 -51.93 -0.42 0.45 16 32 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 33 H 0.09 1.18 7.18 -51.93 -0.37 0.81 16 34 H 0.20 1.34 8.06 -52.48 -0.42 0.92 16 35 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.09 0.98 7.18 -51.93 -0.37 0.60 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.57 5.26 -51.93 -0.27 0.30 16 39 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.09 1.55 8.13 -51.93 -0.42 1.13 16 41 H 0.09 1.13 8.04 -51.93 -0.42 0.71 16 42 H 0.09 0.88 6.33 -51.93 -0.33 0.55 16 43 H 0.08 0.91 8.12 -51.93 -0.42 0.49 16 44 H 0.07 0.92 7.99 -51.92 -0.41 0.50 16 45 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 46 H 0.06 1.62 6.88 -51.93 -0.36 1.26 16 47 H 0.03 0.73 7.97 -51.93 -0.41 0.32 16 48 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 49 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 50 H 0.04 0.78 8.08 -51.93 -0.42 0.37 16 LS Contribution 402.15 15.07 6.06 6.06 Total: -1.00 -31.66 402.15 -10.74 -42.40 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -7.99 Total: -0.26 kcal Atomic # 6 Polarization: 10.04 SS G_CDS: -3.00 Total: 7.03 kcal Atomic # 7 Polarization: -61.36 SS G_CDS: -0.88 Total: -62.24 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: 0.09 Total: -9.56 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -31.66 -10.74 -42.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072989089.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.272 kcal (2) G-P(sol) polarization free energy of solvation -31.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds