Wall clock time and date at job start Wed Apr 1 2020 03:36:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50696 * 109.47018 * 2 1 4 4 N 1.32152 * 120.53885 * 270.28408 * 3 2 1 5 5 C 1.31864 * 120.96880 * 180.33563 * 4 3 2 6 6 N 1.31867 * 122.09562 * 359.65383 * 5 4 3 7 7 C 1.32145 * 120.96871 * 0.02819 * 6 5 4 8 8 C 1.50703 * 120.54105 * 179.97438 * 7 6 5 9 9 C 1.52998 * 109.46857 * 270.01723 * 8 7 6 10 10 C 1.39949 * 118.92487 * 359.97438 * 7 6 5 11 11 C 1.47826 * 120.94372 * 180.02562 * 10 7 6 12 12 O 1.21550 * 120.00158 * 90.00539 * 11 10 7 13 13 N 1.34787 * 119.99797 * 270.00348 * 11 10 7 14 14 C 1.47890 * 134.33938 * 180.02562 * 13 11 10 15 15 C 1.52375 * 85.58710 * 156.51305 * 14 13 11 16 16 C 1.47891 * 134.34304 * 359.97438 * 13 11 10 17 17 C 1.53654 * 116.38842 * 141.35649 * 15 14 13 18 18 C 1.54609 * 102.72895 * 95.48499 * 17 15 14 19 19 N 1.47130 * 107.36734 * 20.75555 * 18 17 15 20 20 C 1.36932 * 125.59179 * 180.93239 * 19 18 17 21 21 H 1.07997 * 120.00597 * 185.89238 * 20 19 18 22 22 C 1.38815 * 119.99516 * 5.88157 * 20 19 18 23 23 N 1.31622 * 120.00198 * 7.35497 * 22 20 19 24 24 Si 1.86807 * 119.99795 * 187.07179 * 22 20 19 25 25 H 1.48492 * 109.47246 * 265.29506 * 24 22 20 26 26 H 1.48503 * 109.46936 * 25.29435 * 24 22 20 27 27 H 1.48497 * 109.46780 * 145.28985 * 24 22 20 28 28 C 1.47727 * 108.82554 * 1.18962 * 19 18 17 29 29 H 1.08999 * 109.46960 * 60.00074 * 1 2 3 30 30 H 1.09001 * 109.47152 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46960 * 300.00308 * 1 2 3 32 32 H 1.08998 * 109.46960 * 239.99692 * 2 1 3 33 33 H 1.08999 * 109.46960 * 119.99926 * 2 1 3 34 34 H 1.08003 * 118.95081 * 179.68014 * 5 4 3 35 35 H 1.09001 * 109.47077 * 30.01807 * 8 7 6 36 36 H 1.09001 * 109.47312 * 150.01716 * 8 7 6 37 37 H 1.09003 * 109.47061 * 179.97438 * 9 8 7 38 38 H 1.09001 * 109.47345 * 299.99920 * 9 8 7 39 39 H 1.09001 * 109.47165 * 59.99903 * 9 8 7 40 40 H 1.08997 * 113.85511 * 42.34332 * 14 13 11 41 41 H 1.08998 * 113.96738 * 270.69541 * 14 13 11 42 42 H 1.08992 * 113.85132 * 89.31922 * 16 13 11 43 43 H 1.08997 * 113.84944 * 317.65338 * 16 13 11 44 44 H 1.09008 * 110.75718 * 337.17860 * 17 15 14 45 45 H 1.08990 * 110.76248 * 213.79501 * 17 15 14 46 46 H 1.09005 * 109.86542 * 261.30935 * 18 17 15 47 47 H 1.09001 * 109.97505 * 140.26834 * 18 17 15 48 48 H 0.97001 * 119.99956 * 179.71985 * 23 22 20 49 49 H 1.09003 * 110.40101 * 96.07132 * 28 19 18 50 50 H 1.08995 * 110.40610 * 218.48669 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2508 2.0558 -1.1382 5 6 2.6965 3.2967 -1.1481 6 7 2.9382 3.9634 -0.0363 7 6 2.7415 3.4074 1.1463 8 6 3.0214 4.1779 2.4108 9 6 4.4738 3.9514 2.8350 10 6 2.2690 2.0914 1.2054 11 6 2.0328 1.4262 2.5042 12 8 0.9449 1.5085 3.0402 13 7 3.0237 0.7285 3.0941 14 6 3.1393 -0.0404 4.3521 15 6 4.2758 -0.7804 3.6575 16 6 4.4276 0.4265 2.7405 17 6 5.4919 -1.1353 4.5271 18 6 5.1878 -2.5876 4.9615 19 7 4.2159 -3.1381 4.0039 20 6 3.6764 -4.3958 4.0500 21 1 3.0423 -4.7413 3.2470 22 6 3.9449 -5.2270 5.1289 23 7 4.5957 -4.7602 6.1734 24 14 3.3755 -7.0060 5.1018 25 1 2.0640 -7.1165 5.7894 26 1 3.2365 -7.4598 3.6947 27 1 4.3736 -7.8557 5.7996 28 6 3.9220 -2.1137 2.9809 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.8688 3.7828 -2.0971 35 1 2.8563 5.2406 2.2328 36 1 2.3542 3.8340 3.2011 37 1 4.6765 4.5091 3.7494 38 1 4.6389 2.8888 3.0130 39 1 5.1411 4.2954 2.0447 40 1 2.2730 -0.6656 4.5678 41 1 3.4587 0.5552 5.2073 42 1 5.1418 1.1668 3.1007 43 1 4.5719 0.1676 1.6916 44 1 5.5521 -0.4773 5.3941 45 1 6.4108 -1.0912 3.9427 46 1 4.7626 -2.5927 5.9652 47 1 6.1022 -3.1808 4.9437 48 1 4.7797 -5.3399 6.9290 49 1 4.5408 -2.2705 2.0974 50 1 2.8653 -2.1350 2.7144 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001072989089.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:36:45 Heat of formation + Delta-G solvation = 49.555319 kcal Electronic energy + Delta-G solvation = -31605.905388 eV Core-core repulsion = 27634.237628 eV Total energy + Delta-G solvation = -3971.667760 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.65336 -41.59323 -39.53696 -37.26556 -36.83348 -35.37095 -34.09734 -32.65497 -32.03241 -31.21736 -29.80234 -27.87426 -27.44107 -26.45365 -26.18021 -25.18444 -24.10409 -22.14462 -21.93638 -21.07075 -19.70436 -19.21835 -18.80117 -18.34334 -17.56508 -17.46316 -16.75054 -16.46292 -16.15352 -16.07429 -15.57026 -15.41524 -15.24971 -14.91343 -14.69301 -14.64697 -14.34717 -14.24027 -13.91734 -13.81549 -13.71580 -13.36944 -13.21923 -12.92912 -12.86004 -12.75505 -12.68449 -12.55780 -12.43696 -12.18452 -12.07997 -12.02821 -11.91750 -11.78007 -11.66783 -11.46419 -11.27534 -10.94148 -10.67747 -10.62156 -10.41500 -9.83879 -8.84957 -7.81245 -5.18553 -0.46888 -0.17798 1.29719 1.46917 1.47016 1.56262 1.61686 2.50091 2.50167 2.81594 2.89097 3.06709 3.13904 3.27079 3.39874 3.60755 3.74455 3.75970 3.95097 4.03858 4.08302 4.12978 4.15791 4.17893 4.24297 4.32524 4.34403 4.45713 4.53186 4.64326 4.67763 4.69469 4.75848 4.79399 4.85647 4.88194 4.94047 4.95839 5.01402 5.06881 5.10753 5.13521 5.19037 5.22977 5.31338 5.47705 5.68946 5.77843 5.87040 6.25481 6.51211 6.87292 6.90046 7.13482 7.80524 8.43537 9.25749 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.015436 B = 0.003218 C = 0.002894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.457108 B = 8698.730782 C = 9674.487221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.083 4.083 3 C 0.214 3.786 4 N -0.530 5.530 5 C 0.312 3.688 6 N -0.527 5.527 7 C 0.216 3.784 8 C -0.083 4.083 9 C -0.143 4.143 10 C -0.238 4.238 11 C 0.600 3.400 12 O -0.572 6.572 13 N -0.626 5.626 14 C 0.130 3.870 15 C -0.095 4.095 16 C 0.127 3.873 17 C -0.109 4.109 18 C 0.176 3.824 19 N -0.624 5.624 20 C -0.241 4.241 21 H 0.076 0.924 22 C -0.060 4.060 23 N -0.944 5.944 24 Si 0.970 3.030 25 H -0.290 1.290 26 H -0.271 1.271 27 H -0.293 1.293 28 C 0.159 3.841 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.039 0.961 32 H 0.108 0.892 33 H 0.073 0.927 34 H 0.237 0.763 35 H 0.104 0.896 36 H 0.072 0.928 37 H 0.086 0.914 38 H 0.056 0.944 39 H 0.067 0.933 40 H 0.056 0.944 41 H 0.112 0.888 42 H 0.126 0.874 43 H 0.089 0.911 44 H 0.093 0.907 45 H 0.088 0.912 46 H 0.028 0.972 47 H -0.005 1.005 48 H 0.246 0.754 49 H 0.036 0.964 50 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.447 19.396 -11.748 22.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.121 4.121 3 C 0.068 3.932 4 N -0.244 5.244 5 C 0.025 3.975 6 N -0.241 5.241 7 C 0.069 3.931 8 C -0.121 4.121 9 C -0.200 4.200 10 C -0.245 4.245 11 C 0.388 3.612 12 O -0.452 6.452 13 N -0.360 5.360 14 C 0.008 3.992 15 C -0.096 4.096 16 C 0.006 3.994 17 C -0.148 4.148 18 C 0.051 3.949 19 N -0.350 5.350 20 C -0.370 4.370 21 H 0.094 0.906 22 C -0.254 4.254 23 N -0.593 5.593 24 Si 0.799 3.201 25 H -0.217 1.217 26 H -0.196 1.196 27 H -0.220 1.220 28 C 0.034 3.966 29 H 0.086 0.914 30 H 0.098 0.902 31 H 0.058 0.942 32 H 0.126 0.874 33 H 0.091 0.909 34 H 0.253 0.747 35 H 0.123 0.877 36 H 0.090 0.910 37 H 0.105 0.895 38 H 0.075 0.925 39 H 0.086 0.914 40 H 0.075 0.925 41 H 0.130 0.870 42 H 0.144 0.856 43 H 0.108 0.892 44 H 0.112 0.888 45 H 0.106 0.894 46 H 0.046 0.954 47 H 0.013 0.987 48 H 0.055 0.945 49 H 0.054 0.946 50 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 0.876 19.820 -12.328 23.357 hybrid contribution -0.735 -1.821 1.095 2.248 sum 0.141 17.999 -11.233 21.217 Atomic orbital electron populations 1.21641 0.92786 1.03413 1.01821 1.20680 0.97693 0.89131 1.04606 1.21957 0.87786 0.96626 0.86843 1.68369 1.15478 1.11599 1.28942 1.25905 0.87023 0.86438 0.98085 1.68390 1.19079 1.38204 0.98421 1.22099 0.86564 0.88998 0.95416 1.20721 0.99938 1.00991 0.90451 1.21795 0.92672 1.02721 1.02848 1.21350 1.09673 0.98330 0.95193 1.17490 0.83021 0.76842 0.83806 1.90795 1.25480 1.62579 1.66333 1.50211 1.12519 1.49902 1.23322 1.23039 0.97296 0.90969 0.87894 1.22307 0.96300 0.93978 0.97052 1.23301 0.81209 0.94207 1.00688 1.22502 0.96558 0.96118 0.99612 1.21102 0.90471 0.90464 0.92894 1.44813 1.49621 1.11460 1.29114 1.19355 1.24506 0.89614 1.03530 0.90621 1.25532 1.01643 1.02208 0.96016 1.70150 1.47012 1.35251 1.06870 0.85194 0.76973 0.80326 0.77648 1.21680 1.19554 1.21962 1.21227 0.97318 0.86544 0.91476 0.91371 0.90174 0.94154 0.87407 0.90866 0.74673 0.87712 0.90976 0.89541 0.92471 0.91394 0.92495 0.86981 0.85643 0.89219 0.88837 0.89378 0.95401 0.98679 0.94461 0.94645 0.95370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.24 9.90 71.98 0.71 -2.53 16 2 C -0.08 -1.97 5.91 29.85 0.18 -1.80 16 3 C 0.21 5.27 6.12 42.92 0.26 5.53 16 4 N -0.53 -11.73 10.36 -187.06 -1.94 -13.67 16 5 C 0.31 5.68 12.27 180.84 2.22 7.90 16 6 N -0.53 -10.83 10.36 -187.06 -1.94 -12.77 16 7 C 0.22 4.82 6.12 42.93 0.26 5.08 16 8 C -0.08 -1.51 5.91 29.85 0.18 -1.33 16 9 C -0.14 -1.97 9.89 71.98 0.71 -1.26 16 10 C -0.24 -6.09 5.40 -19.91 -0.11 -6.20 16 11 C 0.60 17.66 4.74 86.78 0.41 18.07 16 12 O -0.57 -21.40 17.77 -3.87 -0.07 -21.47 16 13 N -0.63 -16.32 3.54 -867.21 -3.07 -19.39 16 14 C 0.13 3.72 8.16 85.91 0.70 4.43 16 15 C -0.09 -2.67 0.99 -52.09 -0.05 -2.72 16 16 C 0.13 2.62 7.21 85.89 0.62 3.24 16 17 C -0.11 -3.21 6.36 31.36 0.20 -3.02 16 18 C 0.18 7.94 5.47 86.81 0.47 8.41 16 19 N -0.62 -30.37 3.41 -692.87 -2.36 -32.73 16 20 C -0.24 -13.23 10.26 84.04 0.86 -12.37 16 21 H 0.08 4.04 7.84 -2.91 -0.02 4.02 16 22 C -0.06 -3.38 5.45 84.86 0.46 -2.92 16 23 N -0.94 -55.33 10.45 21.65 0.23 -55.10 16 24 Si 0.97 45.40 29.56 68.60 2.03 47.42 16 25 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 26 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 27 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 28 C 0.16 5.96 6.65 86.36 0.57 6.53 16 29 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.04 1.13 8.08 -2.39 -0.02 1.11 16 32 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 33 H 0.07 1.95 7.18 -2.39 -0.02 1.93 16 34 H 0.24 2.25 8.06 -2.91 -0.02 2.22 16 35 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.07 1.54 7.18 -2.39 -0.02 1.52 16 37 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.06 0.83 5.26 -2.39 -0.01 0.82 16 39 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.06 2.03 8.13 -2.39 -0.02 2.01 16 41 H 0.11 2.68 8.04 -2.39 -0.02 2.66 16 42 H 0.13 1.81 6.33 -2.39 -0.02 1.80 16 43 H 0.09 1.74 8.12 -2.39 -0.02 1.72 16 44 H 0.09 2.29 7.99 -2.38 -0.02 2.27 16 45 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 46 H 0.03 1.45 6.88 -2.38 -0.02 1.44 16 47 H -0.01 -0.26 7.97 -2.39 -0.02 -0.28 16 48 H 0.25 14.09 8.31 -92.71 -0.77 13.32 16 49 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 50 H 0.03 1.11 8.08 -2.39 -0.02 1.09 16 Total: -1.00 -72.52 402.15 2.48 -70.05 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: 0.94 Total: 12.59 kcal Atomic # 6 Polarization: 16.39 SS G_CDS: 8.67 Total: 25.06 kcal Atomic # 7 Polarization: -124.57 SS G_CDS: -9.08 Total: -133.65 kcal Atomic # 8 Polarization: -21.40 SS G_CDS: -0.07 Total: -21.47 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.42 kcal Total: -72.52 2.48 -70.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072989089.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.601 kcal (2) G-P(sol) polarization free energy of solvation -72.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds