Wall clock time and date at job start Wed Apr 1 2020 03:24:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30751 * 125.61681 * 2 1 4 4 C 1.33572 * 109.14841 * 180.02562 * 3 2 1 5 5 C 1.35028 * 107.98134 * 359.94127 * 4 3 2 6 6 N 1.35318 * 125.61640 * 179.97438 * 2 1 3 7 7 H 0.97001 * 126.49869 * 0.06034 * 6 2 1 8 8 C 1.50645 * 124.45835 * 180.18093 * 5 4 3 9 9 C 1.53404 * 108.38373 * 16.40501 * 8 5 4 10 10 H 1.08997 * 109.48186 * 70.34476 * 9 8 5 11 11 C 1.50701 * 109.47479 * 190.36608 * 9 8 5 12 12 O 1.21285 * 119.99887 * 119.97425 * 11 9 8 13 13 N 1.34777 * 119.99921 * 299.96649 * 11 9 8 14 14 C 1.47402 * 125.58816 * 0.03219 * 13 11 9 15 15 C 1.54867 * 104.81656 * 204.37734 * 14 13 11 16 16 C 1.55168 * 101.73262 * 322.76934 * 15 14 13 17 17 H 1.08997 * 113.25468 * 158.11777 * 16 15 14 18 18 C 1.53750 * 108.31154 * 285.38564 * 16 15 14 19 19 N 1.46591 * 108.10897 * 124.37868 * 18 16 15 20 20 C 1.36937 * 125.31089 * 181.24748 * 19 18 16 21 21 H 1.08006 * 119.99972 * 0.02562 * 20 19 18 22 22 C 1.38812 * 120.00310 * 180.02562 * 20 19 18 23 23 N 1.31621 * 119.99643 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 120.00271 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47255 * 89.99950 * 24 22 20 26 26 H 1.48495 * 109.47294 * 209.99912 * 24 22 20 27 27 H 1.48500 * 109.47163 * 330.00352 * 24 22 20 28 28 C 1.46712 * 109.37529 * 1.28033 * 19 18 16 29 29 C 1.46707 * 125.58630 * 180.02562 * 13 11 9 30 30 H 1.09005 * 112.12839 * 55.75429 * 29 13 11 31 31 C 1.53127 * 109.44079 * 310.35269 * 9 8 5 32 32 C 1.50869 * 128.03426 * 179.97438 * 4 3 2 33 33 H 1.09000 * 109.46824 * 90.02722 * 1 2 3 34 34 H 1.09007 * 109.46973 * 210.02759 * 1 2 3 35 35 H 1.08996 * 109.47516 * 330.02603 * 1 2 3 36 36 H 1.09001 * 109.68739 * 256.68461 * 8 5 4 37 37 H 1.08995 * 109.68470 * 136.12608 * 8 5 4 38 38 H 1.09001 * 110.37330 * 85.53810 * 14 13 11 39 39 H 1.09005 * 110.37159 * 323.20783 * 14 13 11 40 40 H 1.09000 * 110.97354 * 80.88353 * 15 14 13 41 41 H 1.08999 * 110.97238 * 204.65842 * 15 14 13 42 42 H 1.09007 * 109.74238 * 244.04337 * 18 16 15 43 43 H 1.09000 * 109.74582 * 4.69942 * 18 16 15 44 44 H 0.96995 * 120.00071 * 180.02562 * 23 22 20 45 45 H 1.09005 * 109.98180 * 222.71032 * 28 19 18 46 46 H 1.08996 * 110.01909 * 101.42683 * 28 19 18 47 47 H 1.09001 * 109.45878 * 190.02794 * 31 9 8 48 48 H 1.08995 * 109.46365 * 310.01350 * 31 9 8 49 49 H 1.09000 * 109.67348 * 76.91657 * 32 4 3 50 50 H 1.08999 * 109.70492 * 316.39730 * 32 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2685 1.0629 0.0000 4 6 3.5494 0.6843 -0.0006 5 6 3.5850 -0.6656 0.0004 6 7 2.2950 -1.1000 0.0005 7 1 1.9972 -2.0232 0.0001 8 6 4.8492 -1.4848 0.0041 9 6 6.0137 -0.5758 0.4175 10 1 5.9202 -0.3230 1.4737 11 6 7.3183 -1.2938 0.1862 12 8 8.1412 -0.8268 -0.5725 13 7 7.5706 -2.4548 0.8225 14 6 6.6621 -3.1307 1.7663 15 6 7.5879 -3.9972 2.6554 16 6 8.6487 -4.4793 1.6306 17 1 9.5872 -4.7839 2.0938 18 6 8.0100 -5.5646 0.7486 19 7 8.1466 -5.1526 -0.6515 20 6 7.6766 -5.8511 -1.7316 21 1 7.1568 -6.7864 -1.5852 22 6 7.8684 -5.3571 -3.0146 23 7 8.5015 -4.2170 -3.1929 24 14 7.2279 -6.3102 -4.4878 25 1 5.8420 -5.8743 -4.7950 26 1 8.0997 -6.0515 -5.6618 27 1 7.2328 -7.7625 -4.1780 28 6 8.8661 -3.8756 -0.7152 29 6 8.7943 -3.2530 0.6893 30 1 9.6891 -2.6740 0.9182 31 6 5.9812 0.7063 -0.4191 32 6 4.7777 1.5603 -0.0013 33 1 -0.3633 -0.0005 -1.0277 34 1 -0.3633 -0.8898 0.5143 35 1 -0.3634 0.8902 0.5134 36 1 5.0313 -1.8835 -0.9939 37 1 4.7532 -2.3049 0.7156 38 1 5.9553 -3.7613 1.2269 39 1 6.1312 -2.3973 2.3732 40 1 8.0482 -3.3972 3.4404 41 1 7.0436 -4.8408 3.0796 42 1 8.5220 -6.5143 0.9046 43 1 6.9547 -5.6698 1.0004 44 1 8.6352 -3.8715 -4.0893 45 1 8.3899 -3.2155 -1.4402 46 1 9.9058 -4.0466 -0.9940 47 1 6.9001 1.2697 -0.2560 48 1 5.8954 0.4491 -1.4748 49 1 4.9420 1.9627 0.9983 50 1 4.6451 2.3786 -0.7091 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075968941.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:43 Heat of formation + Delta-G solvation = 46.993811 kcal Electronic energy + Delta-G solvation = -31837.250830 eV Core-core repulsion = 27865.471995 eV Total energy + Delta-G solvation = -3971.778835 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.36059 -40.27510 -38.22014 -35.98470 -34.76671 -33.21286 -32.20393 -31.34532 -30.83709 -30.01476 -28.69329 -27.51867 -26.29071 -24.71853 -23.51567 -22.94899 -21.94763 -20.86979 -20.65816 -19.65767 -19.07280 -18.31137 -17.34216 -17.05692 -16.59365 -15.90081 -15.47772 -15.15843 -14.72275 -14.46336 -13.93275 -13.86099 -13.76653 -13.66192 -13.45701 -13.21375 -13.08004 -12.93603 -12.76321 -12.61090 -12.26802 -12.08013 -11.91576 -11.68912 -11.53571 -11.37671 -11.10517 -11.05323 -10.92385 -10.81915 -10.73979 -10.52414 -10.30622 -10.15037 -9.89192 -9.83026 -9.79247 -9.68129 -9.21806 -8.61103 -8.07571 -8.02447 -6.80503 -5.63914 -3.05256 1.96364 2.88038 3.03373 3.19869 3.37721 3.42753 3.42878 3.46162 4.22821 4.47028 4.55644 4.71666 4.77183 4.85186 4.91314 5.00747 5.10715 5.12544 5.18030 5.27551 5.35308 5.42555 5.47052 5.49940 5.54335 5.59686 5.61587 5.69183 5.73824 5.75927 5.80743 5.86873 5.99665 6.01588 6.07731 6.17003 6.21640 6.32590 6.34474 6.43804 6.53258 6.58319 6.65650 6.77154 6.86745 7.33459 7.49486 7.65288 7.94955 8.05421 8.06825 8.40270 8.68785 9.23617 9.85056 10.47844 11.40395 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.010059 B = 0.003888 C = 0.003392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2782.867159 B = 7199.911706 C = 8253.447730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.193 3.807 3 N -0.482 5.482 4 C 0.004 3.996 5 C -0.016 4.016 6 N -0.557 5.557 7 H 0.418 0.582 8 C -0.038 4.038 9 C -0.091 4.091 10 H 0.095 0.905 11 C 0.533 3.467 12 O -0.526 6.526 13 N -0.597 5.597 14 C 0.102 3.898 15 C -0.125 4.125 16 C -0.110 4.110 17 H 0.095 0.905 18 C 0.144 3.856 19 N -0.599 5.599 20 C -0.232 4.232 21 H 0.076 0.924 22 C -0.005 4.005 23 N -0.912 5.912 24 Si 0.909 3.091 25 H -0.290 1.290 26 H -0.290 1.290 27 H -0.282 1.282 28 C 0.155 3.845 29 C 0.113 3.887 30 H 0.078 0.922 31 C -0.099 4.099 32 C -0.031 4.031 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.082 0.918 38 H 0.071 0.929 39 H 0.068 0.932 40 H 0.070 0.930 41 H 0.080 0.920 42 H 0.020 0.980 43 H 0.023 0.977 44 H 0.253 0.747 45 H 0.106 0.894 46 H 0.020 0.980 47 H 0.083 0.917 48 H 0.074 0.926 49 H 0.074 0.926 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.285 6.182 13.268 18.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.069 4.069 3 N -0.202 5.202 4 C -0.125 4.125 5 C -0.132 4.132 6 N -0.160 5.160 7 H 0.256 0.744 8 C -0.077 4.077 9 C -0.113 4.113 10 H 0.113 0.887 11 C 0.320 3.680 12 O -0.402 6.402 13 N -0.331 5.331 14 C -0.021 4.021 15 C -0.163 4.163 16 C -0.129 4.129 17 H 0.113 0.887 18 C 0.017 3.983 19 N -0.325 5.325 20 C -0.360 4.360 21 H 0.094 0.906 22 C -0.202 4.202 23 N -0.559 5.559 24 Si 0.740 3.260 25 H -0.218 1.218 26 H -0.216 1.216 27 H -0.208 1.208 28 C 0.030 3.970 29 C 0.009 3.991 30 H 0.096 0.904 31 C -0.137 4.137 32 C -0.069 4.069 33 H 0.097 0.903 34 H 0.090 0.910 35 H 0.107 0.893 36 H 0.108 0.892 37 H 0.100 0.900 38 H 0.089 0.911 39 H 0.086 0.914 40 H 0.089 0.911 41 H 0.099 0.901 42 H 0.037 0.963 43 H 0.041 0.959 44 H 0.064 0.936 45 H 0.124 0.876 46 H 0.038 0.962 47 H 0.101 0.899 48 H 0.093 0.907 49 H 0.092 0.908 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -11.121 7.385 12.567 18.334 hybrid contribution -0.270 -2.071 -0.787 2.232 sum -11.391 5.314 11.780 17.227 Atomic orbital electron populations 1.20135 0.84926 1.03814 1.03424 1.23258 0.95365 0.81432 1.06893 1.69902 1.01761 1.28583 1.19952 1.20539 0.92783 0.91184 1.08035 1.20896 0.85536 0.95591 1.11169 1.42786 1.06177 1.09981 1.57023 0.74381 1.20137 0.87622 0.96127 1.03806 1.21218 0.91973 0.96091 1.01996 0.88716 1.19941 0.88264 0.79831 0.79923 1.90730 1.48247 1.65844 1.35345 1.48242 1.18756 1.21643 1.44453 1.22352 0.93392 0.95505 0.90878 1.22811 0.97139 0.99331 0.97030 1.23054 0.98540 0.95978 0.95353 0.88668 1.21144 0.96732 0.94457 0.85929 1.44176 1.66338 1.22327 0.99673 1.18973 1.30379 1.02533 0.84112 0.90644 1.24808 1.00611 0.97475 0.97318 1.69909 1.45710 1.19684 1.20579 0.86169 0.78099 0.78997 0.82765 1.21774 1.21592 1.20754 1.21702 0.95998 0.87936 0.91389 1.22635 0.86611 0.90459 0.99389 0.90409 1.21447 0.97964 0.94012 1.00300 1.19964 0.88661 0.96264 1.02054 0.90320 0.90969 0.89270 0.89232 0.89963 0.91103 0.91412 0.91102 0.90149 0.96260 0.95944 0.93631 0.87576 0.96215 0.89858 0.90729 0.90755 0.90196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.47 10.51 36.01 0.38 -0.10 16 2 C 0.19 2.28 8.16 -154.95 -1.26 1.02 16 3 N -0.48 -7.08 11.25 -6.94 -0.08 -7.16 16 4 C 0.00 0.06 6.98 -82.89 -0.58 -0.52 16 5 C -0.02 -0.21 7.08 -81.86 -0.58 -0.79 16 6 N -0.56 -6.27 6.15 -6.53 -0.04 -6.31 16 7 H 0.42 3.46 8.96 -40.82 -0.37 3.09 16 8 C -0.04 -0.53 5.21 -27.70 -0.14 -0.67 16 9 C -0.09 -1.28 1.85 -91.50 -0.17 -1.45 16 10 H 0.09 1.14 7.81 -51.93 -0.41 0.73 16 11 C 0.53 9.66 6.82 -10.98 -0.07 9.59 16 12 O -0.53 -11.73 15.53 5.55 0.09 -11.64 16 13 N -0.60 -10.26 3.00 -162.24 -0.49 -10.75 16 14 C 0.10 1.36 4.67 -2.56 -0.01 1.35 16 15 C -0.12 -1.50 6.30 -24.60 -0.16 -1.66 16 16 C -0.11 -1.74 4.25 -87.88 -0.37 -2.11 16 17 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 18 C 0.14 2.80 6.41 -3.60 -0.02 2.77 16 19 N -0.60 -14.95 3.38 -172.04 -0.58 -15.53 16 20 C -0.23 -6.37 10.25 -15.06 -0.15 -6.53 16 21 H 0.08 2.00 7.83 -52.48 -0.41 1.59 16 22 C -0.01 -0.15 5.48 -17.43 -0.10 -0.25 16 23 N -0.91 -27.29 10.17 55.49 0.56 -26.72 16 24 Si 0.91 22.20 29.55 -169.99 -5.02 17.18 16 25 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 26 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 27 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 28 C 0.16 3.85 5.17 -3.51 -0.02 3.83 16 29 C 0.11 2.16 3.66 -66.20 -0.24 1.92 16 30 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 31 C -0.10 -1.38 4.64 -26.47 -0.12 -1.51 16 32 C -0.03 -0.39 6.30 -27.61 -0.17 -0.57 16 33 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.09 1.49 8.11 -51.93 -0.42 1.06 16 37 H 0.08 1.01 5.45 -51.93 -0.28 0.72 16 38 H 0.07 1.02 6.67 -51.93 -0.35 0.68 16 39 H 0.07 0.72 7.23 -51.93 -0.38 0.35 16 40 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.08 0.83 7.96 -51.93 -0.41 0.42 16 42 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.02 0.42 6.78 -51.93 -0.35 0.07 16 44 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 45 H 0.11 3.06 5.30 -51.93 -0.28 2.79 16 46 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 47 H 0.08 1.16 7.77 -51.93 -0.40 0.75 16 48 H 0.07 1.18 8.11 -51.93 -0.42 0.76 16 49 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 50 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 LS Contribution 381.81 15.07 5.75 5.75 Total: -1.00 -35.42 381.81 -11.45 -46.86 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: -7.84 Total: 3.98 kcal Atomic # 6 Polarization: 8.14 SS G_CDS: -3.80 Total: 4.33 kcal Atomic # 7 Polarization: -65.84 SS G_CDS: -0.62 Total: -66.46 kcal Atomic # 8 Polarization: -11.73 SS G_CDS: 0.09 Total: -11.64 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.42 -11.45 -46.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075968941.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.854 kcal (2) G-P(sol) polarization free energy of solvation -35.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.861 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds