Wall clock time and date at job start Wed Apr 1 2020 03:24:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30751 * 125.61681 * 2 1 4 4 C 1.33572 * 109.14841 * 180.02562 * 3 2 1 5 5 C 1.35028 * 107.98134 * 359.94127 * 4 3 2 6 6 N 1.35318 * 125.61640 * 179.97438 * 2 1 3 7 7 H 0.97001 * 126.49869 * 0.06034 * 6 2 1 8 8 C 1.50645 * 124.45835 * 180.18093 * 5 4 3 9 9 C 1.53404 * 108.38373 * 16.40501 * 8 5 4 10 10 H 1.08997 * 109.48186 * 70.34476 * 9 8 5 11 11 C 1.50701 * 109.47479 * 190.36608 * 9 8 5 12 12 O 1.21285 * 119.99887 * 119.97425 * 11 9 8 13 13 N 1.34777 * 119.99921 * 299.96649 * 11 9 8 14 14 C 1.47402 * 125.58816 * 0.03219 * 13 11 9 15 15 C 1.54867 * 104.81656 * 204.37734 * 14 13 11 16 16 C 1.55168 * 101.73262 * 322.76934 * 15 14 13 17 17 H 1.08997 * 113.25468 * 158.11777 * 16 15 14 18 18 C 1.53750 * 108.31154 * 285.38564 * 16 15 14 19 19 N 1.46591 * 108.10897 * 124.37868 * 18 16 15 20 20 C 1.36937 * 125.31089 * 181.24748 * 19 18 16 21 21 H 1.08006 * 119.99972 * 0.02562 * 20 19 18 22 22 C 1.38812 * 120.00310 * 180.02562 * 20 19 18 23 23 N 1.31621 * 119.99643 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 120.00271 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47255 * 89.99950 * 24 22 20 26 26 H 1.48495 * 109.47294 * 209.99912 * 24 22 20 27 27 H 1.48500 * 109.47163 * 330.00352 * 24 22 20 28 28 C 1.46712 * 109.37529 * 1.28033 * 19 18 16 29 29 C 1.46707 * 125.58630 * 180.02562 * 13 11 9 30 30 H 1.09005 * 112.12839 * 55.75429 * 29 13 11 31 31 C 1.53127 * 109.44079 * 310.35269 * 9 8 5 32 32 C 1.50869 * 128.03426 * 179.97438 * 4 3 2 33 33 H 1.09000 * 109.46824 * 90.02722 * 1 2 3 34 34 H 1.09007 * 109.46973 * 210.02759 * 1 2 3 35 35 H 1.08996 * 109.47516 * 330.02603 * 1 2 3 36 36 H 1.09001 * 109.68739 * 256.68461 * 8 5 4 37 37 H 1.08995 * 109.68470 * 136.12608 * 8 5 4 38 38 H 1.09001 * 110.37330 * 85.53810 * 14 13 11 39 39 H 1.09005 * 110.37159 * 323.20783 * 14 13 11 40 40 H 1.09000 * 110.97354 * 80.88353 * 15 14 13 41 41 H 1.08999 * 110.97238 * 204.65842 * 15 14 13 42 42 H 1.09007 * 109.74238 * 244.04337 * 18 16 15 43 43 H 1.09000 * 109.74582 * 4.69942 * 18 16 15 44 44 H 0.96995 * 120.00071 * 180.02562 * 23 22 20 45 45 H 1.09005 * 109.98180 * 222.71032 * 28 19 18 46 46 H 1.08996 * 110.01909 * 101.42683 * 28 19 18 47 47 H 1.09001 * 109.45878 * 190.02794 * 31 9 8 48 48 H 1.08995 * 109.46365 * 310.01350 * 31 9 8 49 49 H 1.09000 * 109.67348 * 76.91657 * 32 4 3 50 50 H 1.08999 * 109.70492 * 316.39730 * 32 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2685 1.0629 0.0000 4 6 3.5494 0.6843 -0.0006 5 6 3.5850 -0.6656 0.0004 6 7 2.2950 -1.1000 0.0005 7 1 1.9972 -2.0232 0.0001 8 6 4.8492 -1.4848 0.0041 9 6 6.0137 -0.5758 0.4175 10 1 5.9202 -0.3230 1.4737 11 6 7.3183 -1.2938 0.1862 12 8 8.1412 -0.8268 -0.5725 13 7 7.5706 -2.4548 0.8225 14 6 6.6621 -3.1307 1.7663 15 6 7.5879 -3.9972 2.6554 16 6 8.6487 -4.4793 1.6306 17 1 9.5872 -4.7839 2.0938 18 6 8.0100 -5.5646 0.7486 19 7 8.1466 -5.1526 -0.6515 20 6 7.6766 -5.8511 -1.7316 21 1 7.1568 -6.7864 -1.5852 22 6 7.8684 -5.3571 -3.0146 23 7 8.5015 -4.2170 -3.1929 24 14 7.2279 -6.3102 -4.4878 25 1 5.8420 -5.8743 -4.7950 26 1 8.0997 -6.0515 -5.6618 27 1 7.2328 -7.7625 -4.1780 28 6 8.8661 -3.8756 -0.7152 29 6 8.7943 -3.2530 0.6893 30 1 9.6891 -2.6740 0.9182 31 6 5.9812 0.7063 -0.4191 32 6 4.7777 1.5603 -0.0013 33 1 -0.3633 -0.0005 -1.0277 34 1 -0.3633 -0.8898 0.5143 35 1 -0.3634 0.8902 0.5134 36 1 5.0313 -1.8835 -0.9939 37 1 4.7532 -2.3049 0.7156 38 1 5.9553 -3.7613 1.2269 39 1 6.1312 -2.3973 2.3732 40 1 8.0482 -3.3972 3.4404 41 1 7.0436 -4.8408 3.0796 42 1 8.5220 -6.5143 0.9046 43 1 6.9547 -5.6698 1.0004 44 1 8.6352 -3.8715 -4.0893 45 1 8.3899 -3.2155 -1.4402 46 1 9.9058 -4.0466 -0.9940 47 1 6.9001 1.2697 -0.2560 48 1 5.8954 0.4491 -1.4748 49 1 4.9420 1.9627 0.9983 50 1 4.6451 2.3786 -0.7091 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001075968941.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:42 Heat of formation + Delta-G solvation = 23.507883 kcal Electronic energy + Delta-G solvation = -31838.269256 eV Core-core repulsion = 27865.471995 eV Total energy + Delta-G solvation = -3972.797261 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.33441 -41.66755 -39.64976 -37.21942 -36.48974 -34.32173 -33.83729 -32.41569 -32.16577 -31.23946 -30.23947 -28.58331 -27.76229 -26.58455 -24.73016 -24.03321 -23.19427 -22.34791 -21.78758 -20.96997 -20.28550 -19.63411 -18.89933 -18.35035 -18.04722 -17.16865 -16.86360 -16.60374 -16.18151 -15.82029 -15.60824 -15.09783 -14.85495 -14.80643 -14.61636 -14.46997 -14.37373 -14.05150 -13.85873 -13.72767 -13.55660 -13.28904 -13.24866 -13.02351 -12.93973 -12.84953 -12.71702 -12.54083 -12.37368 -12.14355 -12.03629 -11.97455 -11.83553 -11.82249 -11.54918 -11.37378 -10.92312 -10.81531 -10.79352 -10.62069 -9.53596 -9.02097 -8.86089 -7.79122 -5.22169 0.99603 1.39698 1.41827 1.51167 1.62997 2.03561 2.10604 2.16810 2.45895 3.28311 3.32164 3.41909 3.60741 3.65478 3.72989 3.77279 3.79812 4.03760 4.07764 4.12152 4.16923 4.25267 4.31469 4.42916 4.51661 4.53742 4.54609 4.59439 4.66073 4.75018 4.76274 4.77863 4.87725 4.92042 4.97906 5.03140 5.11079 5.14886 5.16920 5.18220 5.26299 5.31411 5.32348 5.38446 5.47444 5.62462 5.77127 5.89654 6.30117 6.52139 6.68457 7.08650 7.10545 7.27851 7.80703 8.41690 9.23138 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.010059 B = 0.003888 C = 0.003392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2782.867159 B = 7199.911706 C = 8253.447730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.201 3.799 3 N -0.519 5.519 4 C -0.013 4.013 5 C -0.029 4.029 6 N -0.549 5.549 7 H 0.432 0.568 8 C -0.025 4.025 9 C -0.078 4.078 10 H 0.130 0.870 11 C 0.523 3.477 12 O -0.581 6.581 13 N -0.597 5.597 14 C 0.093 3.907 15 C -0.107 4.107 16 C -0.098 4.098 17 H 0.118 0.882 18 C 0.136 3.864 19 N -0.618 5.618 20 C -0.235 4.235 21 H 0.086 0.914 22 C -0.068 4.068 23 N -0.947 5.947 24 Si 0.973 3.027 25 H -0.288 1.288 26 H -0.300 1.300 27 H -0.263 1.263 28 C 0.165 3.835 29 C 0.116 3.884 30 H 0.076 0.924 31 C -0.093 4.093 32 C -0.023 4.023 33 H 0.088 0.912 34 H 0.100 0.900 35 H 0.094 0.906 36 H 0.049 0.951 37 H 0.102 0.898 38 H 0.060 0.940 39 H 0.107 0.893 40 H 0.100 0.900 41 H 0.110 0.890 42 H 0.023 0.977 43 H 0.041 0.959 44 H 0.240 0.760 45 H 0.059 0.941 46 H -0.027 1.027 47 H 0.080 0.920 48 H 0.042 0.958 49 H 0.095 0.905 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.029 5.084 16.855 22.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.062 4.062 3 N -0.240 5.240 4 C -0.142 4.142 5 C -0.146 4.146 6 N -0.153 5.153 7 H 0.273 0.727 8 C -0.064 4.064 9 C -0.100 4.100 10 H 0.148 0.852 11 C 0.313 3.687 12 O -0.461 6.461 13 N -0.329 5.329 14 C -0.029 4.029 15 C -0.145 4.145 16 C -0.117 4.117 17 H 0.136 0.864 18 C 0.012 3.988 19 N -0.344 5.344 20 C -0.364 4.364 21 H 0.104 0.896 22 C -0.261 4.261 23 N -0.596 5.596 24 Si 0.802 3.198 25 H -0.215 1.215 26 H -0.227 1.227 27 H -0.188 1.188 28 C 0.039 3.961 29 C 0.011 3.989 30 H 0.094 0.906 31 C -0.131 4.131 32 C -0.061 4.061 33 H 0.107 0.893 34 H 0.119 0.881 35 H 0.113 0.887 36 H 0.068 0.932 37 H 0.120 0.880 38 H 0.079 0.921 39 H 0.125 0.875 40 H 0.118 0.882 41 H 0.128 0.872 42 H 0.041 0.959 43 H 0.058 0.942 44 H 0.050 0.950 45 H 0.078 0.922 46 H -0.009 1.009 47 H 0.099 0.901 48 H 0.061 0.939 49 H 0.113 0.887 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -13.906 6.219 16.224 22.255 hybrid contribution 0.559 -1.774 -1.927 2.678 sum -13.347 4.446 14.297 20.058 Atomic orbital electron populations 1.20345 0.81779 1.05491 1.04565 1.24099 0.96972 0.80843 1.04289 1.69913 1.02059 1.30112 1.21868 1.20814 0.93298 0.91810 1.08324 1.20730 0.86151 0.95288 1.12388 1.42771 1.05311 1.10832 1.56415 0.72707 1.19924 0.87848 0.96556 1.02031 1.21179 0.89637 0.95335 1.03832 0.85219 1.20738 0.89002 0.80062 0.78915 1.90701 1.50284 1.67473 1.37653 1.48340 1.18806 1.21082 1.44712 1.22685 0.93147 0.96479 0.90548 1.22853 0.95347 1.00212 0.96045 1.23066 1.00894 0.92521 0.95204 0.86376 1.21434 0.98108 0.95803 0.83498 1.44440 1.65859 1.22365 1.01694 1.19423 1.29179 1.02715 0.85132 0.89601 1.25653 1.01645 0.98500 1.00268 1.70235 1.47807 1.21626 1.19980 0.85146 0.77071 0.78594 0.78975 1.21485 1.22697 1.18785 1.21317 0.92719 0.87846 0.94237 1.22388 0.87973 0.91961 0.96614 0.90553 1.21349 0.98747 0.94513 0.98533 1.19912 0.87407 0.95674 1.03115 0.89322 0.88146 0.88744 0.93235 0.87958 0.92128 0.87501 0.88187 0.87181 0.95882 0.94157 0.95002 0.92238 1.00921 0.90114 0.93928 0.88679 0.90215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.74 10.51 71.24 0.75 0.01 16 2 C 0.20 4.33 8.16 137.97 1.13 5.45 16 3 N -0.52 -14.56 11.25 -175.88 -1.98 -16.54 16 4 C -0.01 -0.36 6.98 41.61 0.29 -0.07 16 5 C -0.03 -0.75 7.08 41.14 0.29 -0.45 16 6 N -0.55 -11.26 6.15 -174.58 -1.07 -12.34 16 7 H 0.43 6.08 8.96 -92.71 -0.83 5.25 16 8 C -0.02 -0.68 5.21 29.97 0.16 -0.52 16 9 C -0.08 -2.17 1.85 -11.36 -0.02 -2.19 16 10 H 0.13 2.71 7.81 -2.39 -0.02 2.70 16 11 C 0.52 19.46 6.82 87.66 0.60 20.06 16 12 O -0.58 -27.78 15.53 -3.05 -0.05 -27.82 16 13 N -0.60 -20.12 3.00 -785.60 -2.36 -22.48 16 14 C 0.09 2.14 4.67 86.84 0.41 2.54 16 15 C -0.11 -2.00 6.30 31.98 0.20 -1.80 16 16 C -0.10 -2.82 4.25 -9.02 -0.04 -2.86 16 17 H 0.12 2.92 8.14 -2.39 -0.02 2.90 16 18 C 0.14 5.06 6.41 86.61 0.56 5.61 16 19 N -0.62 -31.43 3.38 -698.21 -2.36 -33.79 16 20 C -0.24 -13.18 10.25 84.03 0.86 -12.32 16 21 H 0.09 4.52 7.83 -2.91 -0.02 4.49 16 22 C -0.07 -3.98 5.48 84.86 0.47 -3.51 16 23 N -0.95 -60.51 10.17 21.65 0.22 -60.29 16 24 Si 0.97 47.03 29.55 68.60 2.03 49.06 16 25 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16 26 H -0.30 -14.87 7.11 99.48 0.71 -14.17 16 27 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 28 C 0.17 8.68 5.17 86.61 0.45 9.12 16 29 C 0.12 4.44 3.66 46.00 0.17 4.61 16 30 H 0.08 2.93 8.14 -2.38 -0.02 2.91 16 31 C -0.09 -2.69 4.64 30.76 0.14 -2.55 16 32 C -0.02 -0.57 6.30 30.03 0.19 -0.38 16 33 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.10 0.62 8.14 -2.38 -0.02 0.60 16 35 H 0.09 1.04 8.14 -2.39 -0.02 1.03 16 36 H 0.05 1.74 8.11 -2.39 -0.02 1.72 16 37 H 0.10 2.29 5.45 -2.39 -0.01 2.27 16 38 H 0.06 1.55 6.67 -2.39 -0.02 1.54 16 39 H 0.11 1.69 7.23 -2.38 -0.02 1.67 16 40 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.11 1.54 7.96 -2.39 -0.02 1.53 16 42 H 0.02 0.85 8.14 -2.38 -0.02 0.83 16 43 H 0.04 1.38 6.78 -2.39 -0.02 1.36 16 44 H 0.24 15.25 8.31 -92.71 -0.77 14.47 16 45 H 0.06 3.71 5.30 -2.38 -0.01 3.69 16 46 H -0.03 -1.62 8.14 -2.39 -0.02 -1.64 16 47 H 0.08 2.35 7.77 -2.39 -0.02 2.33 16 48 H 0.04 1.47 8.11 -2.39 -0.02 1.46 16 49 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 50 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -85.49 381.81 1.15 -84.33 By element: Atomic # 1 Polarization: 19.00 SS G_CDS: 0.13 Total: 19.13 kcal Atomic # 6 Polarization: 14.15 SS G_CDS: 6.59 Total: 20.74 kcal Atomic # 7 Polarization: -137.88 SS G_CDS: -7.55 Total: -145.43 kcal Atomic # 8 Polarization: -27.78 SS G_CDS: -0.05 Total: -27.82 kcal Atomic # 14 Polarization: 47.03 SS G_CDS: 2.03 Total: 49.06 kcal Total: -85.49 1.15 -84.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075968941.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.841 kcal (2) G-P(sol) polarization free energy of solvation -85.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds