Wall clock time and date at job start Wed Apr 1 2020 03:35:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50701 * 109.46802 * 2 1 4 4 N 1.31927 * 120.17215 * 264.24438 * 3 2 1 5 5 N 1.28276 * 122.32396 * 180.27980 * 4 3 2 6 6 C 1.31912 * 122.51933 * 359.72017 * 5 4 3 7 7 C 1.50701 * 120.02160 * 180.02562 * 6 5 4 8 8 C 1.38506 * 119.96784 * 0.02562 * 6 5 4 9 9 C 1.39731 * 120.17549 * 83.99026 * 3 2 1 10 10 C 1.48134 * 121.14030 * 0.02562 * 9 3 2 11 11 O 1.21519 * 120.00187 * 353.82950 * 10 9 3 12 12 N 1.34773 * 120.00177 * 173.82325 * 10 9 3 13 13 C 1.46501 * 120.00384 * 179.97438 * 12 10 9 14 14 H 1.09000 * 112.88334 * 336.35496 * 13 12 10 15 15 C 1.53951 * 113.65706 * 107.81808 * 13 12 10 16 16 C 1.53948 * 87.29578 * 89.74311 * 15 13 12 17 17 H 1.08996 * 113.66450 * 139.19963 * 16 15 13 18 18 N 1.46497 * 113.66015 * 270.25865 * 16 15 13 19 19 C 1.36945 * 120.00018 * 252.18238 * 18 16 15 20 20 H 1.07998 * 119.99849 * 0.02562 * 19 18 16 21 21 C 1.38813 * 119.99990 * 179.97438 * 19 18 16 22 22 N 1.31621 * 119.99606 * 180.02562 * 21 19 18 23 23 Si 1.86796 * 120.00085 * 0.02562 * 21 19 18 24 24 H 1.48506 * 109.47314 * 89.99684 * 23 21 19 25 25 H 1.48498 * 109.47046 * 209.99693 * 23 21 19 26 26 H 1.48502 * 109.47409 * 330.00003 * 23 21 19 27 27 C 1.52906 * 113.66356 * 205.00312 * 13 12 10 28 28 C 1.52909 * 121.13536 * 36.15274 * 27 13 12 29 29 C 1.53947 * 86.78736 * 100.81872 * 28 27 13 30 30 C 1.53072 * 121.06500 * 144.68781 * 27 13 12 31 31 H 1.08995 * 109.46993 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47230 * 300.00294 * 1 2 3 33 33 H 1.09008 * 109.46725 * 60.00038 * 1 2 3 34 34 H 1.08997 * 109.47237 * 240.00258 * 2 1 3 35 35 H 1.08999 * 109.46917 * 119.99749 * 2 1 3 36 36 H 1.09002 * 109.47113 * 269.98167 * 7 6 5 37 37 H 1.09007 * 109.46754 * 29.98043 * 7 6 5 38 38 H 1.09000 * 109.47513 * 149.98235 * 7 6 5 39 39 H 1.08001 * 121.09155 * 180.02562 * 8 6 5 40 40 H 0.97000 * 119.99485 * 0.02562 * 12 10 9 41 41 H 1.08999 * 113.57620 * 204.34501 * 15 13 12 42 42 H 1.08992 * 113.58315 * 335.13474 * 15 13 12 43 43 H 0.96999 * 120.00306 * 72.18983 * 18 16 15 44 44 H 0.97000 * 119.99578 * 179.97438 * 22 21 19 45 45 H 1.09004 * 113.66322 * 346.34316 * 28 27 13 46 46 H 1.09008 * 113.66038 * 215.29206 * 28 27 13 47 47 H 1.08999 * 113.58201 * 139.33446 * 29 28 27 48 48 H 1.09004 * 113.57891 * 270.05360 * 29 28 27 49 49 H 1.08997 * 113.66125 * 144.67749 * 30 27 13 50 50 H 1.09005 * 113.71133 * 13.58158 * 30 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.3611 2.0079 -1.1348 5 7 2.7979 3.2131 -1.1822 6 6 2.9457 3.9567 -0.1027 7 6 3.4633 5.3669 -0.2237 8 6 2.6251 3.4409 1.1420 9 6 2.1471 2.1252 1.2013 10 6 1.7824 1.5000 2.4938 11 8 1.2706 0.3980 2.5127 12 7 2.0183 2.1533 3.6488 13 6 1.6571 1.5352 4.9270 14 1 0.8709 0.7867 4.8287 15 6 2.8695 1.0570 5.7464 16 6 2.8946 2.4557 6.3891 17 1 3.0977 2.4415 7.4599 18 7 3.7232 3.4214 5.6632 19 6 4.9212 3.8269 6.1884 20 1 5.2553 3.4344 7.1374 21 6 5.7066 4.7417 5.5003 22 7 6.8583 5.1309 6.0049 23 14 5.1291 5.4200 3.8585 24 1 4.3306 6.6515 4.0850 25 1 6.3073 5.7423 3.0141 26 1 4.2901 4.4056 3.1713 27 6 1.4068 2.5448 6.0478 28 6 0.7398 3.8913 5.7646 29 6 -0.5558 3.2669 6.3137 30 6 0.3337 2.2953 7.1105 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 0.5139 -0.8901 34 1 1.8934 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 4.5506 5.3626 -0.1473 37 1 3.1685 5.7806 -1.1881 38 1 3.0452 5.9773 0.5767 39 1 2.7388 4.0337 2.0376 40 1 2.4266 3.0330 3.6336 41 1 2.6330 0.2583 6.4494 42 1 3.7482 0.8404 5.1390 43 1 3.4233 3.7738 4.8107 44 1 7.4072 5.7699 5.5239 45 1 0.6902 4.1406 4.7047 46 1 1.1252 4.7075 6.3757 47 1 -1.1339 3.9441 6.9424 48 1 -1.1615 2.7776 5.5508 49 1 0.6048 2.6621 8.1004 50 1 -0.0398 1.2713 7.1243 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078663096.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:35:58 Heat of formation + Delta-G solvation = 81.733883 kcal Electronic energy + Delta-G solvation = -31859.653882 eV Core-core repulsion = 27889.381490 eV Total energy + Delta-G solvation = -3970.272392 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.61955 -40.79730 -38.99300 -35.76197 -35.15477 -34.09723 -33.73311 -32.64368 -31.44411 -30.48988 -28.16019 -25.89354 -25.65407 -25.02320 -24.42025 -24.00439 -22.66780 -21.93300 -20.68777 -20.36126 -19.07718 -17.94141 -17.58754 -17.07683 -16.22805 -15.83082 -15.64777 -15.36724 -15.30165 -14.94461 -14.62080 -14.29781 -14.12816 -14.05687 -13.84530 -13.35629 -13.21304 -12.94699 -12.70021 -12.56298 -12.43148 -12.37473 -12.20037 -12.07681 -11.88631 -11.68897 -11.25784 -11.20950 -11.07289 -10.95471 -10.88224 -10.55109 -10.41619 -10.32937 -10.24012 -10.03873 -9.84812 -9.67048 -9.57899 -9.51264 -9.05844 -8.89670 -7.49508 -5.96578 -3.33917 0.15713 0.67224 2.61685 2.83113 2.97605 3.13458 3.22503 3.41359 3.73430 4.06225 4.16580 4.32957 4.38435 4.44608 4.58252 4.68312 4.77248 4.84696 4.90478 5.05868 5.07453 5.16836 5.18726 5.31816 5.35710 5.38135 5.40617 5.43027 5.48590 5.63195 5.68475 5.75161 5.76518 5.77080 5.88276 5.90076 5.93971 5.95106 6.00406 6.04869 6.12708 6.20345 6.24427 6.37890 6.44724 6.49580 6.64367 6.76255 7.36751 7.78750 8.00929 8.22337 8.50935 8.96806 9.68693 9.86559 11.21426 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.008561 B = 0.005388 C = 0.003813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3269.810717 B = 5195.157622 C = 7341.594452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.074 4.074 3 C 0.120 3.880 4 N -0.241 5.241 5 N -0.224 5.224 6 C 0.062 3.938 7 C -0.105 4.105 8 C -0.084 4.084 9 C -0.127 4.127 10 C 0.564 3.436 11 O -0.518 6.518 12 N -0.692 5.692 13 C 0.147 3.853 14 H 0.100 0.900 15 C -0.183 4.183 16 C 0.185 3.815 17 H 0.078 0.922 18 N -0.723 5.723 19 C -0.246 4.246 20 H 0.095 0.905 21 C 0.008 3.992 22 N -0.926 5.926 23 Si 0.878 3.122 24 H -0.279 1.279 25 H -0.285 1.285 26 H -0.284 1.284 27 C -0.135 4.135 28 C -0.122 4.122 29 C -0.140 4.140 30 C -0.101 4.101 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.048 0.952 34 H 0.079 0.921 35 H 0.110 0.890 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.081 0.919 39 H 0.154 0.846 40 H 0.400 0.600 41 H 0.085 0.915 42 H 0.074 0.926 43 H 0.352 0.648 44 H 0.261 0.739 45 H 0.056 0.944 46 H 0.091 0.909 47 H 0.065 0.935 48 H 0.074 0.926 49 H 0.089 0.911 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.183 -4.393 -6.240 16.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.113 4.113 3 C -0.025 4.025 4 N -0.082 5.082 5 N -0.067 5.067 6 C -0.083 4.083 7 C -0.164 4.164 8 C -0.113 4.113 9 C -0.141 4.141 10 C 0.350 3.650 11 O -0.395 6.395 12 N -0.344 5.344 13 C 0.043 3.957 14 H 0.118 0.882 15 C -0.224 4.224 16 C 0.073 3.927 17 H 0.096 0.904 18 N -0.364 5.364 19 C -0.376 4.376 20 H 0.113 0.887 21 C -0.188 4.188 22 N -0.573 5.573 23 Si 0.709 3.291 24 H -0.206 1.206 25 H -0.211 1.211 26 H -0.212 1.212 27 C -0.137 4.137 28 C -0.159 4.159 29 C -0.178 4.178 30 C -0.139 4.139 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.067 0.933 34 H 0.098 0.902 35 H 0.128 0.872 36 H 0.106 0.894 37 H 0.106 0.894 38 H 0.100 0.900 39 H 0.171 0.829 40 H 0.238 0.762 41 H 0.103 0.897 42 H 0.093 0.907 43 H 0.186 0.814 44 H 0.072 0.928 45 H 0.075 0.925 46 H 0.109 0.891 47 H 0.083 0.917 48 H 0.093 0.907 49 H 0.107 0.893 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -14.147 -5.206 -7.717 16.935 hybrid contribution 0.041 1.242 0.314 1.281 sum -14.106 -3.964 -7.404 16.417 Atomic orbital electron populations 1.21583 0.93460 1.02342 1.01673 1.20692 0.97222 0.88621 1.04784 1.23108 0.92414 0.98545 0.88446 1.73036 1.08214 1.03133 1.23841 1.72808 1.07368 0.99615 1.26934 1.22830 0.96546 0.99013 0.89871 1.20762 1.02310 0.88847 1.04443 1.22791 0.93563 0.94887 1.00089 1.21110 1.01918 0.95156 0.95935 1.17804 0.78958 0.85291 0.82989 1.90719 1.43037 1.18862 1.86849 1.45709 1.61822 1.21640 1.05233 1.21594 0.98419 0.94954 0.80780 0.88189 1.24265 0.97768 1.00615 0.99791 1.21012 0.87354 0.88149 0.96185 0.90440 1.42443 1.21518 1.50193 1.22222 1.19110 0.93525 1.20117 1.04845 0.88690 1.24678 0.96592 0.99469 0.98082 1.69671 1.12389 1.36065 1.39214 0.86735 0.78073 0.78846 0.85433 1.20558 1.21149 1.21215 1.23530 0.97382 0.96046 0.96786 1.22577 0.95773 0.96853 1.00740 1.22845 0.96425 0.98820 0.99660 1.22504 0.94613 0.99590 0.97197 0.91711 0.92006 0.93279 0.90216 0.87233 0.89389 0.89403 0.90011 0.82892 0.76179 0.89657 0.90725 0.81441 0.92817 0.92478 0.89090 0.91651 0.90704 0.89269 0.91335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.53 9.50 37.16 0.35 -1.18 16 2 C -0.07 -0.95 5.48 -27.88 -0.15 -1.10 16 3 C 0.12 1.77 6.16 -81.99 -0.51 1.27 16 4 N -0.24 -3.80 11.42 33.81 0.39 -3.41 16 5 N -0.22 -3.48 11.41 33.57 0.38 -3.09 16 6 C 0.06 0.86 6.86 -82.46 -0.57 0.30 16 7 C -0.11 -1.15 10.19 36.01 0.37 -0.78 16 8 C -0.08 -1.20 9.34 -38.78 -0.36 -1.56 16 9 C -0.13 -1.90 5.92 -104.58 -0.62 -2.52 16 10 C 0.56 8.61 7.73 -12.20 -0.09 8.52 16 11 O -0.52 -8.26 11.62 5.35 0.06 -8.20 16 12 N -0.69 -10.40 4.65 -54.22 -0.25 -10.66 16 13 C 0.15 2.11 4.12 -67.48 -0.28 1.83 16 14 H 0.10 1.40 7.46 -51.93 -0.39 1.02 16 15 C -0.18 -2.84 7.68 -25.75 -0.20 -3.04 16 16 C 0.18 3.14 4.36 -67.49 -0.29 2.85 16 17 H 0.08 1.36 8.10 -51.93 -0.42 0.93 16 18 N -0.72 -14.97 4.78 -52.99 -0.25 -15.22 16 19 C -0.25 -6.33 10.45 -15.06 -0.16 -6.48 16 20 H 0.10 2.65 8.06 -52.49 -0.42 2.23 16 21 C 0.01 0.22 5.50 -17.43 -0.10 0.12 16 22 N -0.93 -27.35 13.97 55.49 0.78 -26.58 16 23 Si 0.88 19.51 27.74 -169.99 -4.71 14.79 16 24 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 25 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 26 H -0.28 -5.49 4.70 56.52 0.27 -5.22 16 27 C -0.14 -1.84 0.78 -154.63 -0.12 -1.96 16 28 C -0.12 -1.61 7.27 -26.28 -0.19 -1.80 16 29 C -0.14 -1.52 8.08 -25.75 -0.21 -1.73 16 30 C -0.10 -1.12 7.85 -26.20 -0.21 -1.33 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.79 6.89 -51.93 -0.36 0.43 16 33 H 0.05 0.54 8.14 -51.92 -0.42 0.12 16 34 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.11 1.50 5.91 -51.93 -0.31 1.19 16 36 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 37 H 0.09 0.82 8.14 -51.92 -0.42 0.40 16 38 H 0.08 0.78 8.09 -51.93 -0.42 0.36 16 39 H 0.15 2.08 4.98 -52.49 -0.26 1.82 16 40 H 0.40 6.23 4.01 -40.82 -0.16 6.06 16 41 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 42 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 43 H 0.35 6.97 3.20 -40.82 -0.13 6.84 16 44 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 45 H 0.06 0.75 7.58 -51.93 -0.39 0.35 16 46 H 0.09 1.29 8.14 -51.92 -0.42 0.87 16 47 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 48 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 49 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 50 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 392.10 15.07 5.91 5.91 Total: -1.00 -29.59 392.10 -8.64 -38.23 By element: Atomic # 1 Polarization: 24.44 SS G_CDS: -7.61 Total: 16.83 kcal Atomic # 6 Polarization: -5.28 SS G_CDS: -3.33 Total: -8.61 kcal Atomic # 7 Polarization: -60.00 SS G_CDS: 1.04 Total: -58.96 kcal Atomic # 8 Polarization: -8.26 SS G_CDS: 0.06 Total: -8.20 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -4.71 Total: 14.79 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -29.59 -8.64 -38.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078663096.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.968 kcal (2) G-P(sol) polarization free energy of solvation -29.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.234 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds