Wall clock time and date at job start Wed Apr 1 2020 03:35:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50701 * 109.46802 * 2 1 4 4 N 1.31927 * 120.17215 * 264.24438 * 3 2 1 5 5 N 1.28276 * 122.32396 * 180.27980 * 4 3 2 6 6 C 1.31912 * 122.51933 * 359.72017 * 5 4 3 7 7 C 1.50701 * 120.02160 * 180.02562 * 6 5 4 8 8 C 1.38506 * 119.96784 * 0.02562 * 6 5 4 9 9 C 1.39731 * 120.17549 * 83.99026 * 3 2 1 10 10 C 1.48134 * 121.14030 * 0.02562 * 9 3 2 11 11 O 1.21519 * 120.00187 * 353.82950 * 10 9 3 12 12 N 1.34773 * 120.00177 * 173.82325 * 10 9 3 13 13 C 1.46501 * 120.00384 * 179.97438 * 12 10 9 14 14 H 1.09000 * 112.88334 * 336.35496 * 13 12 10 15 15 C 1.53951 * 113.65706 * 107.81808 * 13 12 10 16 16 C 1.53948 * 87.29578 * 89.74311 * 15 13 12 17 17 H 1.08996 * 113.66450 * 139.19963 * 16 15 13 18 18 N 1.46497 * 113.66015 * 270.25865 * 16 15 13 19 19 C 1.36945 * 120.00018 * 252.18238 * 18 16 15 20 20 H 1.07998 * 119.99849 * 0.02562 * 19 18 16 21 21 C 1.38813 * 119.99990 * 179.97438 * 19 18 16 22 22 N 1.31621 * 119.99606 * 180.02562 * 21 19 18 23 23 Si 1.86796 * 120.00085 * 0.02562 * 21 19 18 24 24 H 1.48506 * 109.47314 * 89.99684 * 23 21 19 25 25 H 1.48498 * 109.47046 * 209.99693 * 23 21 19 26 26 H 1.48502 * 109.47409 * 330.00003 * 23 21 19 27 27 C 1.52906 * 113.66356 * 205.00312 * 13 12 10 28 28 C 1.52909 * 121.13536 * 36.15274 * 27 13 12 29 29 C 1.53947 * 86.78736 * 100.81872 * 28 27 13 30 30 C 1.53072 * 121.06500 * 144.68781 * 27 13 12 31 31 H 1.08995 * 109.46993 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47230 * 300.00294 * 1 2 3 33 33 H 1.09008 * 109.46725 * 60.00038 * 1 2 3 34 34 H 1.08997 * 109.47237 * 240.00258 * 2 1 3 35 35 H 1.08999 * 109.46917 * 119.99749 * 2 1 3 36 36 H 1.09002 * 109.47113 * 269.98167 * 7 6 5 37 37 H 1.09007 * 109.46754 * 29.98043 * 7 6 5 38 38 H 1.09000 * 109.47513 * 149.98235 * 7 6 5 39 39 H 1.08001 * 121.09155 * 180.02562 * 8 6 5 40 40 H 0.97000 * 119.99485 * 0.02562 * 12 10 9 41 41 H 1.08999 * 113.57620 * 204.34501 * 15 13 12 42 42 H 1.08992 * 113.58315 * 335.13474 * 15 13 12 43 43 H 0.96999 * 120.00306 * 72.18983 * 18 16 15 44 44 H 0.97000 * 119.99578 * 179.97438 * 22 21 19 45 45 H 1.09004 * 113.66322 * 346.34316 * 28 27 13 46 46 H 1.09008 * 113.66038 * 215.29206 * 28 27 13 47 47 H 1.08999 * 113.58201 * 139.33446 * 29 28 27 48 48 H 1.09004 * 113.57891 * 270.05360 * 29 28 27 49 49 H 1.08997 * 113.66125 * 144.67749 * 30 27 13 50 50 H 1.09005 * 113.71133 * 13.58158 * 30 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.3611 2.0079 -1.1348 5 7 2.7979 3.2131 -1.1822 6 6 2.9457 3.9567 -0.1027 7 6 3.4633 5.3669 -0.2237 8 6 2.6251 3.4409 1.1420 9 6 2.1471 2.1252 1.2013 10 6 1.7824 1.5000 2.4938 11 8 1.2706 0.3980 2.5127 12 7 2.0183 2.1533 3.6488 13 6 1.6571 1.5352 4.9270 14 1 0.8709 0.7867 4.8287 15 6 2.8695 1.0570 5.7464 16 6 2.8946 2.4557 6.3891 17 1 3.0977 2.4415 7.4599 18 7 3.7232 3.4214 5.6632 19 6 4.9212 3.8269 6.1884 20 1 5.2553 3.4344 7.1374 21 6 5.7066 4.7417 5.5003 22 7 6.8583 5.1309 6.0049 23 14 5.1291 5.4200 3.8585 24 1 4.3306 6.6515 4.0850 25 1 6.3073 5.7423 3.0141 26 1 4.2901 4.4056 3.1713 27 6 1.4068 2.5448 6.0478 28 6 0.7398 3.8913 5.7646 29 6 -0.5558 3.2669 6.3137 30 6 0.3337 2.2953 7.1105 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 0.5139 -0.8901 34 1 1.8934 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 4.5506 5.3626 -0.1473 37 1 3.1685 5.7806 -1.1881 38 1 3.0452 5.9773 0.5767 39 1 2.7388 4.0337 2.0376 40 1 2.4266 3.0330 3.6336 41 1 2.6330 0.2583 6.4494 42 1 3.7482 0.8404 5.1390 43 1 3.4233 3.7738 4.8107 44 1 7.4072 5.7699 5.5239 45 1 0.6902 4.1406 4.7047 46 1 1.1252 4.7075 6.3757 47 1 -1.1339 3.9441 6.9424 48 1 -1.1615 2.7776 5.5508 49 1 0.6048 2.6621 8.1004 50 1 -0.0398 1.2713 7.1243 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078663096.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:35:57 Heat of formation + Delta-G solvation = 64.230835 kcal Electronic energy + Delta-G solvation = -31860.412871 eV Core-core repulsion = 27889.381490 eV Total energy + Delta-G solvation = -3971.031381 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.74393 -41.95765 -40.15646 -36.92323 -36.32600 -35.44384 -35.01503 -34.01740 -32.71409 -32.07392 -29.13102 -27.02812 -26.85893 -26.22462 -25.51027 -25.25719 -24.09057 -23.01640 -21.91332 -21.57417 -20.45072 -19.33430 -18.93495 -18.22325 -17.34351 -16.97896 -16.81162 -16.64532 -16.52438 -16.36180 -15.83447 -15.49971 -15.38961 -15.17171 -15.01458 -14.57467 -14.38876 -14.18899 -14.02802 -13.79806 -13.45338 -13.38692 -13.33014 -13.19444 -12.98270 -12.84027 -12.78884 -12.59425 -12.17464 -12.09399 -11.99678 -11.95193 -11.86579 -11.56098 -11.51643 -11.36466 -11.16223 -10.89590 -10.76640 -10.71778 -10.62837 -10.08394 -9.31596 -8.03459 -5.38530 -0.97551 -0.40558 1.17005 1.36899 1.43301 1.45447 1.69862 2.29667 2.44431 2.70055 2.96794 3.08701 3.22446 3.26247 3.32136 3.48236 3.51639 3.73005 3.85936 3.88772 3.95200 4.01495 4.07985 4.16470 4.17454 4.37204 4.44102 4.51881 4.53246 4.57060 4.60848 4.68832 4.79488 4.82723 4.87838 4.94555 4.96486 5.00733 5.04619 5.08852 5.10329 5.14860 5.17159 5.22623 5.28865 5.44987 5.50951 5.59326 5.78240 6.16512 6.20569 6.81907 7.03792 7.39926 7.78189 7.96366 9.17647 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.008561 B = 0.005388 C = 0.003813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3269.810717 B = 5195.157622 C = 7341.594452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.073 4.073 3 C 0.114 3.886 4 N -0.257 5.257 5 N -0.242 5.242 6 C 0.061 3.939 7 C -0.110 4.110 8 C -0.087 4.087 9 C -0.136 4.136 10 C 0.566 3.434 11 O -0.525 6.525 12 N -0.693 5.693 13 C 0.154 3.846 14 H 0.112 0.888 15 C -0.177 4.177 16 C 0.164 3.836 17 H 0.066 0.934 18 N -0.723 5.723 19 C -0.230 4.230 20 H 0.057 0.943 21 C -0.065 4.065 22 N -0.983 5.983 23 Si 0.943 3.057 24 H -0.266 1.266 25 H -0.296 1.296 26 H -0.246 1.246 27 C -0.124 4.124 28 C -0.130 4.130 29 C -0.127 4.127 30 C -0.094 4.094 31 H 0.081 0.919 32 H 0.048 0.952 33 H 0.051 0.949 34 H 0.090 0.910 35 H 0.100 0.900 36 H 0.091 0.909 37 H 0.102 0.898 38 H 0.099 0.901 39 H 0.163 0.837 40 H 0.397 0.603 41 H 0.109 0.891 42 H 0.047 0.953 43 H 0.359 0.641 44 H 0.257 0.743 45 H 0.058 0.942 46 H 0.078 0.922 47 H 0.079 0.921 48 H 0.083 0.917 49 H 0.093 0.907 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.005 -4.620 -7.303 19.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.111 4.111 3 C -0.031 4.031 4 N -0.098 5.098 5 N -0.084 5.084 6 C -0.083 4.083 7 C -0.168 4.168 8 C -0.116 4.116 9 C -0.150 4.150 10 C 0.352 3.648 11 O -0.402 6.402 12 N -0.345 5.345 13 C 0.049 3.951 14 H 0.130 0.870 15 C -0.218 4.218 16 C 0.054 3.946 17 H 0.084 0.916 18 N -0.365 5.365 19 C -0.361 4.361 20 H 0.075 0.925 21 C -0.257 4.257 22 N -0.633 5.633 23 Si 0.770 3.230 24 H -0.192 1.192 25 H -0.222 1.222 26 H -0.171 1.171 27 C -0.126 4.126 28 C -0.168 4.168 29 C -0.164 4.164 30 C -0.132 4.132 31 H 0.100 0.900 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.109 0.891 35 H 0.119 0.881 36 H 0.110 0.890 37 H 0.121 0.879 38 H 0.118 0.882 39 H 0.180 0.820 40 H 0.235 0.765 41 H 0.127 0.873 42 H 0.066 0.934 43 H 0.193 0.807 44 H 0.066 0.934 45 H 0.077 0.923 46 H 0.096 0.904 47 H 0.098 0.902 48 H 0.102 0.898 49 H 0.111 0.889 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -17.041 -5.482 -8.783 19.939 hybrid contribution 0.948 1.240 0.763 1.737 sum -16.093 -4.242 -8.020 18.474 Atomic orbital electron populations 1.21536 0.92431 1.03310 1.01109 1.20727 0.98013 0.87591 1.04809 1.23369 0.92250 0.99285 0.88224 1.72991 1.08846 1.03573 1.24404 1.72766 1.08024 0.99808 1.27850 1.23277 0.95717 1.00053 0.89294 1.20943 1.02498 0.87198 1.06115 1.22954 0.93338 0.94729 1.00612 1.21166 1.02415 0.95647 0.95819 1.17842 0.78734 0.85147 0.83107 1.90714 1.43402 1.19150 1.86982 1.45726 1.61811 1.21462 1.05456 1.21583 0.97739 0.95226 0.80556 0.86993 1.24205 0.97492 1.00124 1.00017 1.21282 0.89553 0.88402 0.95353 0.91591 1.42297 1.20423 1.51052 1.22744 1.19024 0.94947 1.18851 1.03277 0.92457 1.25537 0.96795 1.00541 1.02781 1.69888 1.14389 1.37562 1.41421 0.85669 0.77899 0.79277 0.80203 1.19169 1.22240 1.17145 1.23447 0.95054 0.96769 0.97321 1.22625 0.97267 0.96040 1.00847 1.22787 0.95472 0.98469 0.99673 1.22557 0.93129 1.00971 0.96556 0.90000 0.93282 0.93004 0.89142 0.88144 0.89004 0.87939 0.88219 0.82000 0.76534 0.87254 0.93420 0.80656 0.93423 0.92294 0.90371 0.90226 0.89816 0.88889 0.89472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.68 9.50 71.98 0.68 -2.00 16 2 C -0.07 -1.75 5.48 29.85 0.16 -1.59 16 3 C 0.11 3.22 6.16 42.91 0.26 3.49 16 4 N -0.26 -7.80 11.42 -46.94 -0.54 -8.34 16 5 N -0.24 -7.14 11.41 -47.70 -0.54 -7.69 16 6 C 0.06 1.58 6.86 42.61 0.29 1.87 16 7 C -0.11 -2.07 10.19 71.24 0.73 -1.34 16 8 C -0.09 -2.28 9.34 22.79 0.21 -2.07 16 9 C -0.14 -3.84 5.92 -19.84 -0.12 -3.96 16 10 C 0.57 16.22 7.73 86.87 0.67 16.89 16 11 O -0.52 -15.78 11.62 -3.78 -0.04 -15.82 16 12 N -0.69 -19.38 4.65 -443.75 -2.06 -21.44 16 13 C 0.15 4.04 4.12 45.28 0.19 4.23 16 14 H 0.11 2.77 7.46 -2.39 -0.02 2.75 16 15 C -0.18 -5.28 7.68 31.23 0.24 -5.04 16 16 C 0.16 5.46 4.36 45.28 0.20 5.66 16 17 H 0.07 2.33 8.10 -2.39 -0.02 2.31 16 18 N -0.72 -29.71 4.78 -321.57 -1.54 -31.25 16 19 C -0.23 -12.14 10.45 84.03 0.88 -11.26 16 20 H 0.06 3.38 8.06 -2.91 -0.02 3.36 16 21 C -0.07 -3.59 5.50 84.86 0.47 -3.12 16 22 N -0.98 -60.26 13.97 21.65 0.30 -59.96 16 23 Si 0.94 39.96 27.74 68.60 1.90 41.86 16 24 H -0.27 -10.72 7.11 99.48 0.71 -10.02 16 25 H -0.30 -13.06 7.11 99.48 0.71 -12.35 16 26 H -0.25 -8.60 4.70 99.48 0.47 -8.14 16 27 C -0.12 -3.09 0.78 -52.26 -0.04 -3.13 16 28 C -0.13 -3.10 7.27 30.88 0.22 -2.87 16 29 C -0.13 -2.29 8.08 31.23 0.25 -2.04 16 30 C -0.09 -1.78 7.85 30.94 0.24 -1.54 16 31 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.05 1.17 6.89 -2.39 -0.02 1.15 16 33 H 0.05 1.06 8.14 -2.38 -0.02 1.04 16 34 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.10 2.63 5.91 -2.39 -0.01 2.61 16 36 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.10 1.62 8.14 -2.38 -0.02 1.60 16 38 H 0.10 1.52 8.09 -2.39 -0.02 1.50 16 39 H 0.16 3.88 4.98 -2.91 -0.01 3.86 16 40 H 0.40 11.43 4.01 -92.71 -0.37 11.06 16 41 H 0.11 2.71 8.14 -2.39 -0.02 2.70 16 42 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 43 H 0.36 13.67 3.20 -92.71 -0.30 13.38 16 44 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 45 H 0.06 1.38 7.58 -2.39 -0.02 1.36 16 46 H 0.08 2.08 8.14 -2.38 -0.02 2.06 16 47 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 48 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 49 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 50 H 0.09 1.38 8.14 -2.38 -0.02 1.36 16 Total: -1.00 -66.59 392.10 3.09 -63.49 By element: Atomic # 1 Polarization: 46.90 SS G_CDS: 0.07 Total: 46.97 kcal Atomic # 6 Polarization: -13.38 SS G_CDS: 5.55 Total: -7.83 kcal Atomic # 7 Polarization: -124.29 SS G_CDS: -4.38 Total: -128.67 kcal Atomic # 8 Polarization: -15.78 SS G_CDS: -0.04 Total: -15.82 kcal Atomic # 14 Polarization: 39.96 SS G_CDS: 1.90 Total: 41.86 kcal Total: -66.59 3.09 -63.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078663096.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.725 kcal (2) G-P(sol) polarization free energy of solvation -66.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds