Wall clock time and date at job start Wed Apr 1 2020 03:36:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50699 * 109.47080 * 2 1 4 4 N 1.31921 * 120.17050 * 263.55799 * 3 2 1 5 5 N 1.28286 * 122.32412 * 179.74520 * 4 3 2 6 6 C 1.31921 * 122.51253 * 0.54785 * 5 4 3 7 7 C 1.50696 * 120.01552 * 179.75448 * 6 5 4 8 8 C 1.38502 * 119.96799 * 359.73047 * 6 5 4 9 9 C 1.39724 * 120.17109 * 83.83592 * 3 2 1 10 10 C 1.48131 * 121.14462 * 359.97438 * 9 3 2 11 11 O 1.21517 * 120.00274 * 354.13588 * 10 9 3 12 12 N 1.34783 * 120.00102 * 174.13508 * 10 9 3 13 13 C 1.46502 * 120.00206 * 179.97438 * 12 10 9 14 14 H 1.09004 * 112.88632 * 333.16321 * 13 12 10 15 15 C 1.53952 * 113.66006 * 104.50261 * 13 12 10 16 16 C 1.53949 * 87.29248 * 139.20863 * 15 13 12 17 17 H 1.08999 * 113.66594 * 220.79821 * 16 15 13 18 18 N 1.46497 * 113.66468 * 89.83166 * 16 15 13 19 19 C 1.36936 * 120.00517 * 104.50389 * 18 16 15 20 20 H 1.07998 * 119.99572 * 0.02562 * 19 18 16 21 21 C 1.38810 * 120.00302 * 180.02562 * 19 18 16 22 22 N 1.31621 * 120.00010 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99688 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47254 * 90.00435 * 23 21 19 25 25 H 1.48500 * 109.47014 * 209.99954 * 23 21 19 26 26 H 1.48493 * 109.47518 * 330.00295 * 23 21 19 27 27 C 1.52899 * 113.66128 * 201.69211 * 13 12 10 28 28 C 1.52907 * 121.14083 * 94.91298 * 27 13 12 29 29 C 1.53950 * 86.78329 * 209.37330 * 28 27 13 30 30 C 1.52910 * 121.14391 * 346.34169 * 27 13 12 31 31 H 1.09003 * 109.46690 * 299.99794 * 1 2 3 32 32 H 1.08991 * 109.47237 * 59.99598 * 1 2 3 33 33 H 1.09002 * 109.47344 * 180.02562 * 1 2 3 34 34 H 1.08998 * 109.47030 * 120.00697 * 2 1 3 35 35 H 1.09003 * 109.46690 * 240.00206 * 2 1 3 36 36 H 1.09003 * 109.47093 * 269.98209 * 7 6 5 37 37 H 1.09007 * 109.47074 * 29.97438 * 7 6 5 38 38 H 1.08998 * 109.47262 * 149.97745 * 7 6 5 39 39 H 1.08002 * 121.08527 * 180.02562 * 8 6 5 40 40 H 0.96998 * 120.00105 * 359.97438 * 12 10 9 41 41 H 1.08998 * 113.58465 * 253.81254 * 15 13 12 42 42 H 1.09000 * 113.57737 * 24.53081 * 15 13 12 43 43 H 0.97003 * 119.99971 * 284.50923 * 18 16 15 44 44 H 0.96999 * 119.99677 * 179.97438 * 22 21 19 45 45 H 1.09003 * 113.66243 * 323.84302 * 28 27 13 46 46 H 1.08999 * 113.66937 * 94.89902 * 28 27 13 47 47 H 1.09003 * 113.58084 * 270.13027 * 29 28 27 48 48 H 1.09005 * 113.65334 * 139.34640 * 29 28 27 49 49 H 1.08993 * 113.66512 * 265.09860 * 30 27 13 50 50 H 1.08998 * 113.65743 * 36.15405 * 30 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.3740 2.0032 -1.1333 5 7 2.8019 3.2117 -1.1818 6 6 2.9422 3.9579 -0.1030 7 6 3.4553 5.3697 -0.2245 8 6 2.6173 3.4435 1.1412 9 6 2.1441 2.1261 1.2010 10 6 1.7751 1.5025 2.4929 11 8 1.2674 0.3986 2.5117 12 7 2.0023 2.1594 3.6477 13 6 1.6368 1.5429 4.9254 14 1 0.8162 0.8313 4.8333 15 6 2.8407 0.9987 5.7156 16 6 2.1690 1.5583 6.9827 17 1 2.8661 2.0295 7.6757 18 7 1.2680 0.6080 7.6393 19 6 1.6588 -0.0234 8.7898 20 1 2.6313 0.1796 9.2134 21 6 0.8052 -0.9243 9.4115 22 7 -0.3797 -1.1721 8.8949 23 14 1.3389 -1.7861 10.9806 24 1 0.9330 -0.9726 12.1548 25 1 0.6930 -3.1211 11.0563 26 1 2.8148 -1.9496 10.9781 27 6 1.4549 2.5489 6.0623 28 6 0.0737 3.1018 6.4156 29 6 0.7995 4.3750 6.8868 30 6 1.9401 3.9925 5.9261 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3634 -1.0277 0.0005 34 1 1.8934 -0.5139 0.8899 35 1 1.8933 -0.5138 -0.8900 36 1 4.5423 5.3694 -0.1432 37 1 3.1635 5.7804 -1.1912 38 1 3.0314 5.9802 0.5727 39 1 2.7248 4.0386 2.0361 40 1 2.4078 3.0404 3.6328 41 1 2.9138 -0.0888 5.7049 42 1 3.7824 1.4882 5.4674 43 1 0.3944 0.4259 7.2589 44 1 -0.9760 -1.8019 9.3293 45 1 -0.5689 3.2597 5.5494 46 1 -0.4227 2.5583 7.2195 47 1 1.0876 4.3491 7.9377 48 1 0.2881 5.2973 6.6111 49 1 2.9347 4.1606 6.3390 50 1 1.8220 4.4008 4.9224 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078663097.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:36:01 Heat of formation + Delta-G solvation = 73.528688 kcal Electronic energy + Delta-G solvation = -30655.082739 eV Core-core repulsion = 26684.454542 eV Total energy + Delta-G solvation = -3970.628196 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.69436 -40.62804 -39.02098 -35.57902 -35.04850 -34.31241 -33.86383 -32.60275 -31.52775 -29.67587 -28.30130 -25.84510 -25.66205 -25.00186 -24.30058 -24.04343 -22.70133 -21.95614 -20.73515 -20.45895 -18.41215 -17.99316 -17.41550 -17.06357 -16.25420 -15.93569 -15.71927 -15.34286 -15.24154 -14.79179 -14.67629 -14.30455 -14.09556 -14.05965 -13.58760 -13.41700 -13.12040 -12.81963 -12.72416 -12.67936 -12.49432 -12.28579 -12.06011 -11.91650 -11.73959 -11.49188 -11.15677 -11.02412 -10.95996 -10.86970 -10.83401 -10.51781 -10.47891 -10.22639 -10.14172 -9.94374 -9.81417 -9.73786 -9.64793 -9.48923 -8.93492 -8.79027 -7.06785 -5.84905 -3.15075 0.03702 0.52369 2.59277 2.90806 3.30650 3.39008 3.44604 3.46414 3.59280 3.93062 4.04011 4.26135 4.42747 4.45520 4.65010 4.71534 4.77728 4.86662 4.89189 5.06379 5.07569 5.11001 5.20583 5.28390 5.32419 5.33876 5.35081 5.54239 5.61842 5.63315 5.68654 5.82213 5.82701 5.85793 5.90350 5.93130 5.93901 6.01175 6.04451 6.21079 6.24927 6.33090 6.46779 6.50285 6.60407 6.67498 6.75960 6.95918 7.38710 7.64145 8.04128 8.33003 8.37907 9.44451 9.99272 10.33691 11.36989 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.014655 B = 0.002789 C = 0.002496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1910.161162 B =10036.391740 C =11215.203420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.077 4.077 3 C 0.121 3.879 4 N -0.240 5.240 5 N -0.227 5.227 6 C 0.056 3.944 7 C -0.100 4.100 8 C -0.085 4.085 9 C -0.123 4.123 10 C 0.554 3.446 11 O -0.508 6.508 12 N -0.704 5.704 13 C 0.139 3.861 14 H 0.117 0.883 15 C -0.182 4.182 16 C 0.198 3.802 17 H 0.068 0.932 18 N -0.700 5.700 19 C -0.246 4.246 20 H 0.072 0.928 21 C -0.008 4.008 22 N -0.928 5.928 23 Si 0.908 3.092 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.281 1.281 27 C -0.122 4.122 28 C -0.126 4.126 29 C -0.133 4.133 30 C -0.117 4.117 31 H 0.062 0.938 32 H 0.047 0.953 33 H 0.066 0.934 34 H 0.111 0.889 35 H 0.079 0.921 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.152 0.848 40 H 0.394 0.606 41 H 0.074 0.926 42 H 0.069 0.931 43 H 0.387 0.613 44 H 0.257 0.743 45 H 0.071 0.929 46 H 0.084 0.916 47 H 0.082 0.918 48 H 0.059 0.941 49 H 0.069 0.931 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.994 14.324 -15.666 22.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.115 4.115 3 C -0.023 4.023 4 N -0.081 5.081 5 N -0.070 5.070 6 C -0.088 4.088 7 C -0.158 4.158 8 C -0.115 4.115 9 C -0.137 4.137 10 C 0.339 3.661 11 O -0.384 6.384 12 N -0.354 5.354 13 C 0.036 3.964 14 H 0.135 0.865 15 C -0.224 4.224 16 C 0.085 3.915 17 H 0.086 0.914 18 N -0.338 5.338 19 C -0.377 4.377 20 H 0.090 0.910 21 C -0.205 4.205 22 N -0.576 5.576 23 Si 0.739 3.261 24 H -0.217 1.217 25 H -0.217 1.217 26 H -0.207 1.207 27 C -0.125 4.125 28 C -0.164 4.164 29 C -0.170 4.170 30 C -0.155 4.155 31 H 0.081 0.919 32 H 0.067 0.933 33 H 0.085 0.915 34 H 0.129 0.871 35 H 0.098 0.902 36 H 0.103 0.897 37 H 0.103 0.897 38 H 0.099 0.901 39 H 0.170 0.830 40 H 0.230 0.770 41 H 0.093 0.907 42 H 0.087 0.913 43 H 0.222 0.778 44 H 0.067 0.933 45 H 0.090 0.910 46 H 0.102 0.898 47 H 0.101 0.899 48 H 0.078 0.922 49 H 0.088 0.912 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 5.818 13.285 -17.091 22.416 hybrid contribution 0.083 0.071 2.175 2.177 sum 5.902 13.357 -14.916 20.874 Atomic orbital electron populations 1.21591 0.93259 1.02681 1.01660 1.20728 0.97411 0.88517 1.04886 1.23182 0.91966 0.98710 0.88484 1.73070 1.08037 1.03069 1.23920 1.72834 1.07632 0.99574 1.26999 1.22847 0.96942 0.98980 0.90051 1.20695 1.01901 0.88813 1.04418 1.22517 0.94796 0.94567 0.99636 1.21251 1.01118 0.95135 0.96191 1.17898 0.79500 0.85634 0.83069 1.90791 1.42200 1.18741 1.86620 1.46016 1.62396 1.20972 1.06047 1.22538 0.99403 0.95848 0.78623 0.86491 1.24314 0.96395 1.02116 0.99607 1.20612 0.91539 0.88926 0.90460 0.91429 1.42102 1.16883 1.47254 1.27579 1.19224 1.00130 1.18203 1.00114 0.90986 1.24762 0.96345 1.00074 0.99330 1.69661 1.08434 1.38548 1.40920 0.86184 0.77734 0.78958 0.83242 1.21658 1.21719 1.20694 1.23585 0.98066 0.93629 0.97189 1.22647 0.95789 0.96576 1.01356 1.22736 0.97140 0.97487 0.99651 1.22537 0.99083 0.94663 0.99176 0.91877 0.93340 0.91490 0.87079 0.90226 0.89652 0.89727 0.90068 0.83041 0.77025 0.90675 0.91261 0.77831 0.93329 0.91035 0.89769 0.89917 0.92178 0.91220 0.90960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.58 9.50 37.16 0.35 -1.23 16 2 C -0.08 -0.93 5.48 -27.88 -0.15 -1.09 16 3 C 0.12 1.55 6.16 -82.00 -0.51 1.04 16 4 N -0.24 -3.24 11.42 33.81 0.39 -2.85 16 5 N -0.23 -2.81 11.41 33.57 0.38 -2.43 16 6 C 0.06 0.52 6.86 -82.46 -0.57 -0.05 16 7 C -0.10 -0.53 10.19 36.00 0.37 -0.17 16 8 C -0.09 -0.75 9.34 -38.78 -0.36 -1.12 16 9 C -0.12 -1.43 5.92 -104.58 -0.62 -2.05 16 10 C 0.55 7.40 7.73 -12.20 -0.09 7.31 16 11 O -0.51 -8.33 11.65 5.35 0.06 -8.27 16 12 N -0.70 -8.36 5.25 -54.22 -0.28 -8.65 16 13 C 0.14 2.10 4.01 -67.49 -0.27 1.83 16 14 H 0.12 2.15 7.54 -51.93 -0.39 1.76 16 15 C -0.18 -2.99 7.68 -25.75 -0.20 -3.19 16 16 C 0.20 3.59 4.35 -67.48 -0.29 3.30 16 17 H 0.07 1.23 8.12 -51.93 -0.42 0.81 16 18 N -0.70 -16.38 4.91 -52.99 -0.26 -16.64 16 19 C -0.25 -6.49 9.98 -15.06 -0.15 -6.64 16 20 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 21 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 22 N -0.93 -27.18 13.06 55.49 0.72 -26.46 16 23 Si 0.91 21.79 29.55 -169.99 -5.02 16.76 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 25 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 26 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 27 C -0.12 -1.75 0.91 -154.72 -0.14 -1.89 16 28 C -0.13 -1.85 7.60 -26.28 -0.20 -2.05 16 29 C -0.13 -1.62 8.08 -25.75 -0.21 -1.82 16 30 C -0.12 -1.27 7.16 -26.28 -0.19 -1.45 16 31 H 0.06 0.84 6.88 -51.93 -0.36 0.49 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.11 1.50 5.92 -51.93 -0.31 1.19 16 35 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 37 H 0.08 0.45 8.14 -51.92 -0.42 0.03 16 38 H 0.08 0.27 8.09 -51.93 -0.42 -0.15 16 39 H 0.15 0.81 6.65 -52.49 -0.35 0.46 16 40 H 0.39 3.50 5.15 -40.82 -0.21 3.29 16 41 H 0.07 1.45 8.14 -51.93 -0.42 1.02 16 42 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.39 9.76 7.48 -40.82 -0.31 9.45 16 44 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 45 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 46 H 0.08 1.51 7.51 -51.93 -0.39 1.12 16 47 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 48 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 49 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 50 H 0.07 0.62 6.96 -51.93 -0.36 0.26 16 LS Contribution 401.03 15.07 6.04 6.04 Total: -1.00 -31.26 401.03 -9.00 -40.26 By element: Atomic # 1 Polarization: 19.53 SS G_CDS: -7.71 Total: 11.82 kcal Atomic # 6 Polarization: -6.27 SS G_CDS: -3.32 Total: -9.60 kcal Atomic # 7 Polarization: -57.97 SS G_CDS: 0.95 Total: -57.03 kcal Atomic # 8 Polarization: -8.33 SS G_CDS: 0.06 Total: -8.27 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -31.26 -9.00 -40.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078663097.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.788 kcal (2) G-P(sol) polarization free energy of solvation -31.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.260 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds