Wall clock time and date at job start Wed Apr 1 2020 03:36:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50699 * 109.47080 * 2 1 4 4 N 1.31921 * 120.17050 * 263.55799 * 3 2 1 5 5 N 1.28286 * 122.32412 * 179.74520 * 4 3 2 6 6 C 1.31921 * 122.51253 * 0.54785 * 5 4 3 7 7 C 1.50696 * 120.01552 * 179.75448 * 6 5 4 8 8 C 1.38502 * 119.96799 * 359.73047 * 6 5 4 9 9 C 1.39724 * 120.17109 * 83.83592 * 3 2 1 10 10 C 1.48131 * 121.14462 * 359.97438 * 9 3 2 11 11 O 1.21517 * 120.00274 * 354.13588 * 10 9 3 12 12 N 1.34783 * 120.00102 * 174.13508 * 10 9 3 13 13 C 1.46502 * 120.00206 * 179.97438 * 12 10 9 14 14 H 1.09004 * 112.88632 * 333.16321 * 13 12 10 15 15 C 1.53952 * 113.66006 * 104.50261 * 13 12 10 16 16 C 1.53949 * 87.29248 * 139.20863 * 15 13 12 17 17 H 1.08999 * 113.66594 * 220.79821 * 16 15 13 18 18 N 1.46497 * 113.66468 * 89.83166 * 16 15 13 19 19 C 1.36936 * 120.00517 * 104.50389 * 18 16 15 20 20 H 1.07998 * 119.99572 * 0.02562 * 19 18 16 21 21 C 1.38810 * 120.00302 * 180.02562 * 19 18 16 22 22 N 1.31621 * 120.00010 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99688 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47254 * 90.00435 * 23 21 19 25 25 H 1.48500 * 109.47014 * 209.99954 * 23 21 19 26 26 H 1.48493 * 109.47518 * 330.00295 * 23 21 19 27 27 C 1.52899 * 113.66128 * 201.69211 * 13 12 10 28 28 C 1.52907 * 121.14083 * 94.91298 * 27 13 12 29 29 C 1.53950 * 86.78329 * 209.37330 * 28 27 13 30 30 C 1.52910 * 121.14391 * 346.34169 * 27 13 12 31 31 H 1.09003 * 109.46690 * 299.99794 * 1 2 3 32 32 H 1.08991 * 109.47237 * 59.99598 * 1 2 3 33 33 H 1.09002 * 109.47344 * 180.02562 * 1 2 3 34 34 H 1.08998 * 109.47030 * 120.00697 * 2 1 3 35 35 H 1.09003 * 109.46690 * 240.00206 * 2 1 3 36 36 H 1.09003 * 109.47093 * 269.98209 * 7 6 5 37 37 H 1.09007 * 109.47074 * 29.97438 * 7 6 5 38 38 H 1.08998 * 109.47262 * 149.97745 * 7 6 5 39 39 H 1.08002 * 121.08527 * 180.02562 * 8 6 5 40 40 H 0.96998 * 120.00105 * 359.97438 * 12 10 9 41 41 H 1.08998 * 113.58465 * 253.81254 * 15 13 12 42 42 H 1.09000 * 113.57737 * 24.53081 * 15 13 12 43 43 H 0.97003 * 119.99971 * 284.50923 * 18 16 15 44 44 H 0.96999 * 119.99677 * 179.97438 * 22 21 19 45 45 H 1.09003 * 113.66243 * 323.84302 * 28 27 13 46 46 H 1.08999 * 113.66937 * 94.89902 * 28 27 13 47 47 H 1.09003 * 113.58084 * 270.13027 * 29 28 27 48 48 H 1.09005 * 113.65334 * 139.34640 * 29 28 27 49 49 H 1.08993 * 113.66512 * 265.09860 * 30 27 13 50 50 H 1.08998 * 113.65743 * 36.15405 * 30 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.3740 2.0032 -1.1333 5 7 2.8019 3.2117 -1.1818 6 6 2.9422 3.9579 -0.1030 7 6 3.4553 5.3697 -0.2245 8 6 2.6173 3.4435 1.1412 9 6 2.1441 2.1261 1.2010 10 6 1.7751 1.5025 2.4929 11 8 1.2674 0.3986 2.5117 12 7 2.0023 2.1594 3.6477 13 6 1.6368 1.5429 4.9254 14 1 0.8162 0.8313 4.8333 15 6 2.8407 0.9987 5.7156 16 6 2.1690 1.5583 6.9827 17 1 2.8661 2.0295 7.6757 18 7 1.2680 0.6080 7.6393 19 6 1.6588 -0.0234 8.7898 20 1 2.6313 0.1796 9.2134 21 6 0.8052 -0.9243 9.4115 22 7 -0.3797 -1.1721 8.8949 23 14 1.3389 -1.7861 10.9806 24 1 0.9330 -0.9726 12.1548 25 1 0.6930 -3.1211 11.0563 26 1 2.8148 -1.9496 10.9781 27 6 1.4549 2.5489 6.0623 28 6 0.0737 3.1018 6.4156 29 6 0.7995 4.3750 6.8868 30 6 1.9401 3.9925 5.9261 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3634 -1.0277 0.0005 34 1 1.8934 -0.5139 0.8899 35 1 1.8933 -0.5138 -0.8900 36 1 4.5423 5.3694 -0.1432 37 1 3.1635 5.7804 -1.1912 38 1 3.0314 5.9802 0.5727 39 1 2.7248 4.0386 2.0361 40 1 2.4078 3.0404 3.6328 41 1 2.9138 -0.0888 5.7049 42 1 3.7824 1.4882 5.4674 43 1 0.3944 0.4259 7.2589 44 1 -0.9760 -1.8019 9.3293 45 1 -0.5689 3.2597 5.5494 46 1 -0.4227 2.5583 7.2195 47 1 1.0876 4.3491 7.9377 48 1 0.2881 5.2973 6.6111 49 1 2.9347 4.1606 6.3390 50 1 1.8220 4.4008 4.9224 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078663097.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:36:00 Heat of formation + Delta-G solvation = 53.335494 kcal Electronic energy + Delta-G solvation = -30655.958381 eV Core-core repulsion = 26684.454542 eV Total energy + Delta-G solvation = -3971.503839 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.58985 -41.79324 -40.10921 -36.57362 -36.33718 -35.54173 -34.90296 -33.99818 -32.55122 -31.40683 -28.99391 -26.90266 -26.74820 -26.18269 -25.58163 -25.26043 -24.05668 -22.91370 -21.81185 -21.67104 -19.63614 -19.09963 -18.84634 -18.33381 -17.16327 -17.09624 -16.67491 -16.59005 -16.31895 -16.20192 -15.72779 -15.64233 -15.16089 -15.02714 -14.86431 -14.43894 -14.21942 -14.04676 -13.88899 -13.54441 -13.31121 -13.25739 -13.17122 -13.10914 -12.82548 -12.81579 -12.67710 -12.62287 -12.21416 -12.12801 -11.95671 -11.90663 -11.78756 -11.43483 -11.36601 -11.30375 -11.15056 -10.90908 -10.74775 -10.60498 -10.49176 -9.94727 -9.00715 -7.95251 -5.23876 -0.80775 -0.25713 1.46889 1.48212 1.56458 1.61141 1.86387 2.43171 2.54306 2.81711 3.14656 3.24804 3.36678 3.39754 3.49812 3.57027 3.66082 3.78720 3.95330 3.97833 4.04472 4.18320 4.20168 4.22385 4.24845 4.36522 4.51332 4.57292 4.65083 4.66543 4.77269 4.80736 4.84067 4.88390 4.90898 4.96325 5.02859 5.04933 5.11448 5.16534 5.19929 5.25733 5.27599 5.31542 5.34866 5.41445 5.53354 5.61661 5.71442 6.26740 6.40029 7.05934 7.32668 7.54679 8.09086 8.30440 9.27980 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.014655 B = 0.002789 C = 0.002496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1910.161162 B =10036.391740 C =11215.203420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.074 4.074 3 C 0.107 3.893 4 N -0.266 5.266 5 N -0.255 5.255 6 C 0.061 3.939 7 C -0.099 4.099 8 C -0.063 4.063 9 C -0.136 4.136 10 C 0.555 3.445 11 O -0.546 6.546 12 N -0.685 5.685 13 C 0.151 3.849 14 H 0.075 0.925 15 C -0.171 4.171 16 C 0.178 3.822 17 H 0.072 0.928 18 N -0.715 5.715 19 C -0.239 4.239 20 H 0.080 0.920 21 C -0.075 4.075 22 N -0.969 5.969 23 Si 0.971 3.029 24 H -0.286 1.286 25 H -0.300 1.300 26 H -0.269 1.269 27 C -0.111 4.111 28 C -0.136 4.136 29 C -0.126 4.126 30 C -0.095 4.095 31 H 0.044 0.956 32 H 0.054 0.946 33 H 0.071 0.929 34 H 0.094 0.906 35 H 0.086 0.914 36 H 0.101 0.899 37 H 0.082 0.918 38 H 0.112 0.888 39 H 0.197 0.803 40 H 0.414 0.586 41 H 0.037 0.963 42 H 0.104 0.896 43 H 0.373 0.627 44 H 0.250 0.750 45 H 0.083 0.917 46 H 0.040 0.960 47 H 0.068 0.932 48 H 0.086 0.914 49 H 0.089 0.911 50 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.307 18.306 -16.177 25.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.113 4.113 3 C -0.038 4.038 4 N -0.106 5.106 5 N -0.097 5.097 6 C -0.084 4.084 7 C -0.157 4.157 8 C -0.093 4.093 9 C -0.150 4.150 10 C 0.341 3.659 11 O -0.424 6.424 12 N -0.337 5.337 13 C 0.046 3.954 14 H 0.093 0.907 15 C -0.213 4.213 16 C 0.067 3.933 17 H 0.090 0.910 18 N -0.352 5.352 19 C -0.370 4.370 20 H 0.098 0.902 21 C -0.267 4.267 22 N -0.620 5.620 23 Si 0.800 3.200 24 H -0.213 1.213 25 H -0.227 1.227 26 H -0.194 1.194 27 C -0.113 4.113 28 C -0.174 4.174 29 C -0.163 4.163 30 C -0.133 4.133 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.090 0.910 34 H 0.112 0.888 35 H 0.105 0.895 36 H 0.120 0.880 37 H 0.101 0.899 38 H 0.131 0.869 39 H 0.214 0.786 40 H 0.254 0.746 41 H 0.056 0.944 42 H 0.122 0.878 43 H 0.205 0.795 44 H 0.059 0.941 45 H 0.101 0.899 46 H 0.058 0.942 47 H 0.086 0.914 48 H 0.105 0.895 49 H 0.107 0.893 50 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 8.203 17.338 -17.638 26.058 hybrid contribution -0.585 -1.075 2.274 2.583 sum 7.618 16.263 -15.364 23.634 Atomic orbital electron populations 1.21519 0.93273 1.02820 1.00916 1.20634 0.97416 0.88964 1.04300 1.23179 0.92691 0.98835 0.89113 1.73023 1.09205 1.04056 1.24327 1.72758 1.08582 0.99517 1.28884 1.23528 0.95335 1.00232 0.89342 1.20898 1.02902 0.86275 1.05654 1.22988 0.91958 0.93160 1.01184 1.21075 1.02814 0.96599 0.94558 1.18171 0.78703 0.85159 0.83864 1.90792 1.43826 1.20634 1.87184 1.45668 1.62112 1.21527 1.04387 1.22006 0.97414 0.95650 0.80325 0.90676 1.24182 0.98339 1.00041 0.98782 1.20894 0.91760 0.89428 0.91214 0.90996 1.42239 1.17181 1.48484 1.27335 1.19638 0.99905 1.17092 1.00405 0.90248 1.25544 0.96708 1.01763 1.02692 1.69827 1.09744 1.39812 1.42568 0.85176 0.77763 0.77255 0.79790 1.21286 1.22703 1.19356 1.23417 0.98307 0.95053 0.94566 1.22697 0.95939 0.98135 1.00619 1.22692 0.97325 0.96998 0.99334 1.22597 0.99444 0.90269 1.00971 0.93727 0.92709 0.90979 0.88806 0.89514 0.88037 0.89874 0.86931 0.78562 0.74615 0.94394 0.87808 0.79493 0.94140 0.89863 0.94154 0.91356 0.89522 0.89276 0.87109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.15 9.50 71.98 0.68 -2.47 16 2 C -0.07 -1.89 5.48 29.85 0.16 -1.72 16 3 C 0.11 2.71 6.16 42.90 0.26 2.98 16 4 N -0.27 -7.04 11.42 -46.95 -0.54 -7.58 16 5 N -0.26 -5.88 11.41 -47.70 -0.54 -6.42 16 6 C 0.06 0.91 6.86 42.61 0.29 1.20 16 7 C -0.10 -0.57 10.19 71.23 0.73 0.16 16 8 C -0.06 -0.84 9.34 22.79 0.21 -0.63 16 9 C -0.14 -2.94 5.92 -19.84 -0.12 -3.06 16 10 C 0.56 14.28 7.73 86.87 0.67 14.95 16 11 O -0.55 -18.60 11.65 -3.77 -0.04 -18.65 16 12 N -0.68 -14.43 5.25 -443.75 -2.33 -16.76 16 13 C 0.15 4.45 4.01 45.28 0.18 4.63 16 14 H 0.08 2.92 7.54 -2.39 -0.02 2.90 16 15 C -0.17 -5.51 7.68 31.23 0.24 -5.27 16 16 C 0.18 6.39 4.35 45.28 0.20 6.59 16 17 H 0.07 2.51 8.12 -2.39 -0.02 2.49 16 18 N -0.72 -34.77 4.91 -321.56 -1.58 -36.35 16 19 C -0.24 -12.90 9.98 84.03 0.84 -12.06 16 20 H 0.08 4.08 7.83 -2.91 -0.02 4.06 16 21 C -0.07 -4.26 5.50 84.86 0.47 -3.79 16 22 N -0.97 -59.43 13.06 21.65 0.28 -59.15 16 23 Si 0.97 45.87 29.55 68.60 2.03 47.89 16 24 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16 25 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 26 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 27 C -0.11 -2.99 0.91 -52.32 -0.05 -3.04 16 28 C -0.14 -3.89 7.60 30.88 0.23 -3.65 16 29 C -0.13 -2.65 8.08 31.23 0.25 -2.39 16 30 C -0.10 -1.57 7.16 30.88 0.22 -1.35 16 31 H 0.04 1.25 6.88 -2.39 -0.02 1.24 16 32 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.09 2.70 5.92 -2.39 -0.01 2.69 16 35 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.10 0.34 8.14 -2.39 -0.02 0.32 16 37 H 0.08 0.56 8.14 -2.38 -0.02 0.54 16 38 H 0.11 -0.01 8.09 -2.39 -0.02 -0.03 16 39 H 0.20 0.69 6.65 -2.91 -0.02 0.67 16 40 H 0.41 5.10 5.15 -92.71 -0.48 4.62 16 41 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.10 2.61 8.14 -2.39 -0.02 2.59 16 43 H 0.37 20.01 7.48 -92.71 -0.69 19.32 16 44 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 45 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 46 H 0.04 1.50 7.51 -2.39 -0.02 1.49 16 47 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 48 H 0.09 1.41 8.14 -2.38 -0.02 1.39 16 49 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 50 H 0.11 1.05 6.96 -2.39 -0.02 1.04 16 Total: -1.00 -75.24 401.03 2.56 -72.68 By element: Atomic # 1 Polarization: 33.46 SS G_CDS: -0.20 Total: 33.26 kcal Atomic # 6 Polarization: -14.41 SS G_CDS: 5.48 Total: -8.93 kcal Atomic # 7 Polarization: -121.55 SS G_CDS: -4.71 Total: -126.26 kcal Atomic # 8 Polarization: -18.60 SS G_CDS: -0.04 Total: -18.65 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.89 kcal Total: -75.24 2.56 -72.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078663097.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.014 kcal (2) G-P(sol) polarization free energy of solvation -75.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.679 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds