Wall clock time and date at job start Wed Apr 1 2020 03:36:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50703 * 109.47179 * 2 1 4 4 N 1.31919 * 120.17309 * 96.00782 * 3 2 1 5 5 N 1.28276 * 122.32647 * 179.97438 * 4 3 2 6 6 C 1.31916 * 122.51995 * 0.02562 * 5 4 3 7 7 C 1.50695 * 120.01810 * 179.97438 * 6 5 4 8 8 C 1.38501 * 119.96383 * 359.97438 * 6 5 4 9 9 C 1.39730 * 120.17162 * 275.98418 * 3 2 1 10 10 C 1.48136 * 121.14578 * 0.02562 * 9 3 2 11 11 O 1.21517 * 119.99845 * 5.79704 * 10 9 3 12 12 N 1.34775 * 119.99922 * 185.79424 * 10 9 3 13 13 C 1.46497 * 119.99825 * 180.02562 * 12 10 9 14 14 H 1.09001 * 112.88732 * 25.33240 * 13 12 10 15 15 C 1.53953 * 113.66094 * 253.98978 * 13 12 10 16 16 C 1.54155 * 87.22806 * 220.82782 * 15 13 12 17 17 H 1.08999 * 113.57349 * 270.18585 * 16 15 13 18 18 N 1.46491 * 113.71996 * 139.15005 * 16 15 13 19 19 C 1.36943 * 119.99693 * 107.75310 * 18 16 15 20 20 H 1.07994 * 120.00189 * 359.97438 * 19 18 16 21 21 C 1.38813 * 119.99659 * 179.97438 * 19 18 16 22 22 N 1.31622 * 119.99769 * 179.97438 * 21 19 18 23 23 Si 1.86801 * 120.00450 * 359.97438 * 21 19 18 24 24 H 1.48499 * 109.47112 * 89.99970 * 23 21 19 25 25 H 1.48494 * 109.47257 * 210.00391 * 23 21 19 26 26 H 1.48504 * 109.46987 * 330.00549 * 23 21 19 27 27 C 1.52912 * 86.81184 * 24.65456 * 16 15 13 28 28 C 1.52916 * 121.13331 * 100.89773 * 27 16 15 29 29 C 1.53952 * 86.77848 * 100.81984 * 28 27 16 30 30 C 1.52909 * 121.13631 * 209.45991 * 27 16 15 31 31 H 1.09001 * 109.47155 * 59.99586 * 1 2 3 32 32 H 1.08996 * 109.47032 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.46914 * 299.99686 * 1 2 3 34 34 H 1.09008 * 109.47127 * 240.00118 * 2 1 3 35 35 H 1.08995 * 109.47472 * 120.00173 * 2 1 3 36 36 H 1.08990 * 109.47324 * 270.01890 * 7 6 5 37 37 H 1.08999 * 109.47202 * 30.02842 * 7 6 5 38 38 H 1.09001 * 109.46917 * 150.01987 * 7 6 5 39 39 H 1.08006 * 121.08945 * 179.73000 * 8 6 5 40 40 H 0.96998 * 119.99724 * 0.02562 * 12 10 9 41 41 H 1.09001 * 113.58195 * 335.39446 * 15 13 12 42 42 H 1.09000 * 113.58436 * 106.19107 * 15 13 12 43 43 H 0.97001 * 120.00686 * 287.73964 * 18 16 15 44 44 H 0.97000 * 120.00147 * 179.97438 * 22 21 19 45 45 H 1.08999 * 113.66365 * 215.28920 * 28 27 16 46 46 H 1.08997 * 113.65821 * 346.35042 * 28 27 16 47 47 H 1.08993 * 113.58378 * 270.13070 * 29 28 27 48 48 H 1.09004 * 113.57843 * 139.33452 * 29 28 27 49 49 H 1.08992 * 113.66499 * 13.65371 * 30 27 16 50 50 H 1.09000 * 113.65868 * 144.71110 * 30 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.3659 2.0062 1.1342 5 7 2.7984 3.2129 1.1821 6 6 2.9416 3.9582 0.1031 7 6 3.4543 5.3700 0.2248 8 6 2.6204 3.4426 -1.1415 9 6 2.1477 2.1249 -1.2014 10 6 1.7825 1.4999 -2.4939 11 8 1.2760 0.3955 -2.5130 12 7 2.0118 2.1563 -3.6484 13 6 1.6501 1.5385 -4.9265 14 1 0.8476 0.8069 -4.8317 15 6 2.8598 1.0278 -5.7303 16 6 2.1620 1.5805 -6.9888 17 1 1.5042 0.8598 -7.4745 18 7 3.0734 2.2435 -7.9247 19 6 3.3949 1.6397 -9.1110 20 1 2.9770 0.6746 -9.3564 21 6 4.2581 2.2681 -9.9981 22 7 4.5675 1.6875 -11.1381 23 14 4.9805 3.9378 -9.5740 24 1 6.2615 3.7525 -8.8461 25 1 5.2269 4.7022 -10.8230 26 1 4.0272 4.6860 -8.7156 27 6 1.4314 2.5465 -6.0554 28 6 1.8805 4.0013 -5.9142 29 6 0.7212 4.3602 -6.8616 30 6 0.0330 3.0656 -6.3919 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8934 -0.5138 -0.8901 35 1 1.8934 -0.5138 0.8899 36 1 2.6145 6.0511 0.3620 37 1 4.1236 5.4410 1.0822 38 1 3.9960 5.6392 -0.6820 39 1 2.7264 4.0381 -2.0362 40 1 2.4164 3.0377 -3.6331 41 1 3.7914 1.5392 -5.4882 42 1 2.9590 -0.0577 -5.7267 43 1 3.4490 3.1103 -7.7043 44 1 5.1704 2.1268 -11.7582 45 1 1.7615 4.4001 -4.9068 46 1 2.8664 4.1976 -6.3354 47 1 0.9996 4.3483 -7.9153 48 1 0.1879 5.2664 -6.5743 49 1 -0.4567 2.5145 -7.1947 50 1 -0.6050 3.2013 -5.5187 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078663099.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:36:09 Heat of formation + Delta-G solvation = 77.218402 kcal Electronic energy + Delta-G solvation = -30720.136047 eV Core-core repulsion = 26749.667848 eV Total energy + Delta-G solvation = -3970.468198 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.77638 -40.76855 -39.16456 -35.67001 -35.00645 -34.44260 -34.00188 -32.75083 -31.63223 -30.46292 -28.36605 -25.97735 -25.76261 -25.12725 -24.39054 -24.13104 -22.43375 -21.79795 -20.80801 -20.62637 -18.64239 -18.07991 -18.07698 -17.03789 -16.32364 -16.19420 -15.82779 -15.43598 -15.29799 -14.90201 -14.80747 -14.41198 -14.21840 -14.15204 -13.68307 -13.51643 -13.22637 -12.85038 -12.78329 -12.77206 -12.57074 -12.35109 -12.13707 -12.01585 -11.93221 -11.66204 -11.33744 -11.14407 -11.09836 -10.95920 -10.93542 -10.59522 -10.57803 -10.34067 -10.16929 -10.10133 -10.01910 -9.86221 -9.66960 -9.58629 -8.98963 -8.94182 -7.38152 -5.87550 -3.23995 -0.04113 0.46236 2.47452 2.77215 3.22221 3.25200 3.28371 3.35932 3.53174 3.85997 3.96650 4.19661 4.34730 4.47508 4.51891 4.62760 4.65864 4.78574 4.84097 4.95801 4.99143 4.99463 5.08459 5.20032 5.21092 5.22119 5.28352 5.42366 5.49836 5.53979 5.57501 5.62627 5.69359 5.73748 5.78225 5.82391 5.82537 5.94919 6.07079 6.08242 6.09226 6.14376 6.18180 6.31548 6.39304 6.57725 6.63323 6.78916 7.24541 7.87932 7.88952 8.31804 8.31885 9.08772 9.80737 9.99743 11.30538 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.014111 B = 0.002882 C = 0.002685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.757325 B = 9711.918909 C =10427.024020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.076 4.076 3 C 0.120 3.880 4 N -0.239 5.239 5 N -0.226 5.226 6 C 0.058 3.942 7 C -0.101 4.101 8 C -0.084 4.084 9 C -0.125 4.125 10 C 0.559 3.441 11 O -0.514 6.514 12 N -0.701 5.701 13 C 0.132 3.868 14 H 0.117 0.883 15 C -0.174 4.174 16 C 0.201 3.799 17 H 0.092 0.908 18 N -0.729 5.729 19 C -0.250 4.250 20 H 0.092 0.908 21 C 0.008 3.992 22 N -0.930 5.930 23 Si 0.880 3.120 24 H -0.284 1.284 25 H -0.290 1.290 26 H -0.276 1.276 27 C -0.123 4.123 28 C -0.121 4.121 29 C -0.132 4.132 30 C -0.124 4.124 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.048 0.952 34 H 0.111 0.889 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.153 0.847 40 H 0.397 0.603 41 H 0.079 0.921 42 H 0.068 0.932 43 H 0.363 0.637 44 H 0.261 0.739 45 H 0.072 0.928 46 H 0.072 0.928 47 H 0.089 0.911 48 H 0.060 0.940 49 H 0.072 0.928 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.143 6.079 21.408 23.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.115 4.115 3 C -0.024 4.024 4 N -0.081 5.081 5 N -0.069 5.069 6 C -0.086 4.086 7 C -0.159 4.159 8 C -0.114 4.114 9 C -0.139 4.139 10 C 0.344 3.656 11 O -0.390 6.390 12 N -0.351 5.351 13 C 0.028 3.972 14 H 0.135 0.865 15 C -0.216 4.216 16 C 0.088 3.912 17 H 0.110 0.890 18 N -0.369 5.369 19 C -0.379 4.379 20 H 0.110 0.890 21 C -0.188 4.188 22 N -0.577 5.577 23 Si 0.710 3.290 24 H -0.211 1.211 25 H -0.216 1.216 26 H -0.202 1.202 27 C -0.126 4.126 28 C -0.158 4.158 29 C -0.170 4.170 30 C -0.161 4.161 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.067 0.933 34 H 0.129 0.871 35 H 0.098 0.902 36 H 0.104 0.896 37 H 0.104 0.896 38 H 0.100 0.900 39 H 0.170 0.830 40 H 0.233 0.767 41 H 0.097 0.903 42 H 0.087 0.913 43 H 0.198 0.802 44 H 0.071 0.929 45 H 0.090 0.910 46 H 0.090 0.910 47 H 0.108 0.892 48 H 0.078 0.922 49 H 0.090 0.910 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -7.326 5.012 22.763 24.432 hybrid contribution 0.837 1.921 -1.330 2.482 sum -6.488 6.933 21.433 23.442 Atomic orbital electron populations 1.21585 0.93340 1.02546 1.01655 1.20721 0.97315 0.88572 1.04903 1.23167 0.92075 0.98692 0.88486 1.73069 1.07995 1.03092 1.23911 1.72837 1.07483 0.99574 1.27002 1.22862 0.96787 0.98982 0.89998 1.20709 1.02020 0.88848 1.04366 1.22545 0.94574 0.94537 0.99754 1.21200 1.01434 0.95194 0.96080 1.17870 0.79226 0.85494 0.83057 1.90752 1.42741 1.18782 1.86735 1.45916 1.62335 1.21099 1.05784 1.22399 0.99339 0.96239 0.79263 0.86534 1.24303 0.97423 1.01367 0.98531 1.21060 0.90668 0.92125 0.87329 0.89027 1.42675 1.53661 1.21240 1.19368 1.19127 1.22978 1.03044 0.92784 0.88979 1.24677 0.99753 0.98059 0.96316 1.69693 1.39269 1.38904 1.09841 0.86633 0.79411 0.85461 0.77480 1.21058 1.21609 1.20249 1.23668 0.97518 0.94427 0.96971 1.22476 0.99761 0.94544 0.99061 1.22752 0.96729 0.96953 1.00525 1.22694 0.95402 0.97314 1.00731 0.91983 0.91571 0.93289 0.87111 0.90194 0.89626 0.89644 0.89962 0.82990 0.76693 0.90266 0.91338 0.80244 0.92932 0.90962 0.90981 0.89211 0.92163 0.90968 0.90771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.34 9.51 37.16 0.35 -0.99 16 2 C -0.08 -0.82 5.48 -27.88 -0.15 -0.98 16 3 C 0.12 1.42 6.16 -82.00 -0.51 0.92 16 4 N -0.24 -3.08 11.42 33.81 0.39 -2.69 16 5 N -0.23 -2.71 11.41 33.57 0.38 -2.33 16 6 C 0.06 0.53 6.86 -82.46 -0.57 -0.04 16 7 C -0.10 -0.56 10.19 36.00 0.37 -0.19 16 8 C -0.08 -0.72 9.34 -38.78 -0.36 -1.08 16 9 C -0.12 -1.35 5.92 -104.57 -0.62 -1.97 16 10 C 0.56 6.59 7.74 -12.20 -0.09 6.50 16 11 O -0.51 -7.16 11.65 5.35 0.06 -7.09 16 12 N -0.70 -7.52 5.23 -54.22 -0.28 -7.80 16 13 C 0.13 1.67 4.09 -67.48 -0.28 1.39 16 14 H 0.12 1.55 7.50 -51.93 -0.39 1.16 16 15 C -0.17 -2.65 7.70 -25.64 -0.20 -2.85 16 16 C 0.20 3.43 4.36 -67.38 -0.29 3.13 16 17 H 0.09 1.62 8.10 -51.93 -0.42 1.20 16 18 N -0.73 -15.58 5.13 -52.89 -0.27 -15.86 16 19 C -0.25 -6.60 10.45 -15.06 -0.16 -6.76 16 20 H 0.09 2.63 8.06 -52.49 -0.42 2.21 16 21 C 0.01 0.23 5.50 -17.43 -0.10 0.13 16 22 N -0.93 -28.21 13.97 55.49 0.78 -27.43 16 23 Si 0.88 20.87 27.74 -169.99 -4.71 16.15 16 24 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 26 H -0.28 -6.01 6.52 56.52 0.37 -5.64 16 27 C -0.12 -1.64 1.07 -154.70 -0.16 -1.80 16 28 C -0.12 -1.48 6.78 -26.28 -0.18 -1.66 16 29 C -0.13 -1.69 8.08 -25.75 -0.21 -1.90 16 30 C -0.12 -1.52 7.84 -26.28 -0.21 -1.73 16 31 H 0.06 0.70 6.91 -51.93 -0.36 0.34 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.11 1.31 5.90 -51.92 -0.31 1.00 16 35 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 37 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.08 0.30 8.09 -51.93 -0.42 -0.12 16 39 H 0.15 0.82 6.65 -52.48 -0.35 0.47 16 40 H 0.40 3.45 5.20 -40.82 -0.21 3.24 16 41 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 42 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.36 7.59 3.78 -40.82 -0.15 7.43 16 44 H 0.26 7.54 8.31 -40.82 -0.34 7.21 16 45 H 0.07 0.68 6.99 -51.93 -0.36 0.31 16 46 H 0.07 1.02 6.42 -51.93 -0.33 0.68 16 47 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 48 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 49 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 50 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 LS Contribution 395.83 15.07 5.97 5.97 Total: -1.00 -31.70 395.83 -8.60 -40.31 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: -7.55 Total: 10.63 kcal Atomic # 6 Polarization: -6.50 SS G_CDS: -3.36 Total: -9.86 kcal Atomic # 7 Polarization: -57.10 SS G_CDS: 0.99 Total: -56.11 kcal Atomic # 8 Polarization: -7.16 SS G_CDS: 0.06 Total: -7.09 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -4.71 Total: 16.15 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -31.70 -8.60 -40.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078663099.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.524 kcal (2) G-P(sol) polarization free energy of solvation -31.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.305 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds