Wall clock time and date at job start Wed Apr 1 2020 03:36:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50703 * 109.47179 * 2 1 4 4 N 1.31919 * 120.17309 * 96.00782 * 3 2 1 5 5 N 1.28276 * 122.32647 * 179.97438 * 4 3 2 6 6 C 1.31916 * 122.51995 * 0.02562 * 5 4 3 7 7 C 1.50695 * 120.01810 * 179.97438 * 6 5 4 8 8 C 1.38501 * 119.96383 * 359.97438 * 6 5 4 9 9 C 1.39730 * 120.17162 * 275.98418 * 3 2 1 10 10 C 1.48136 * 121.14578 * 0.02562 * 9 3 2 11 11 O 1.21517 * 119.99845 * 5.79704 * 10 9 3 12 12 N 1.34775 * 119.99922 * 185.79424 * 10 9 3 13 13 C 1.46497 * 119.99825 * 180.02562 * 12 10 9 14 14 H 1.09001 * 112.88732 * 25.33240 * 13 12 10 15 15 C 1.53953 * 113.66094 * 253.98978 * 13 12 10 16 16 C 1.54155 * 87.22806 * 220.82782 * 15 13 12 17 17 H 1.08999 * 113.57349 * 270.18585 * 16 15 13 18 18 N 1.46491 * 113.71996 * 139.15005 * 16 15 13 19 19 C 1.36943 * 119.99693 * 107.75310 * 18 16 15 20 20 H 1.07994 * 120.00189 * 359.97438 * 19 18 16 21 21 C 1.38813 * 119.99659 * 179.97438 * 19 18 16 22 22 N 1.31622 * 119.99769 * 179.97438 * 21 19 18 23 23 Si 1.86801 * 120.00450 * 359.97438 * 21 19 18 24 24 H 1.48499 * 109.47112 * 89.99970 * 23 21 19 25 25 H 1.48494 * 109.47257 * 210.00391 * 23 21 19 26 26 H 1.48504 * 109.46987 * 330.00549 * 23 21 19 27 27 C 1.52912 * 86.81184 * 24.65456 * 16 15 13 28 28 C 1.52916 * 121.13331 * 100.89773 * 27 16 15 29 29 C 1.53952 * 86.77848 * 100.81984 * 28 27 16 30 30 C 1.52909 * 121.13631 * 209.45991 * 27 16 15 31 31 H 1.09001 * 109.47155 * 59.99586 * 1 2 3 32 32 H 1.08996 * 109.47032 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.46914 * 299.99686 * 1 2 3 34 34 H 1.09008 * 109.47127 * 240.00118 * 2 1 3 35 35 H 1.08995 * 109.47472 * 120.00173 * 2 1 3 36 36 H 1.08990 * 109.47324 * 270.01890 * 7 6 5 37 37 H 1.08999 * 109.47202 * 30.02842 * 7 6 5 38 38 H 1.09001 * 109.46917 * 150.01987 * 7 6 5 39 39 H 1.08006 * 121.08945 * 179.73000 * 8 6 5 40 40 H 0.96998 * 119.99724 * 0.02562 * 12 10 9 41 41 H 1.09001 * 113.58195 * 335.39446 * 15 13 12 42 42 H 1.09000 * 113.58436 * 106.19107 * 15 13 12 43 43 H 0.97001 * 120.00686 * 287.73964 * 18 16 15 44 44 H 0.97000 * 120.00147 * 179.97438 * 22 21 19 45 45 H 1.08999 * 113.66365 * 215.28920 * 28 27 16 46 46 H 1.08997 * 113.65821 * 346.35042 * 28 27 16 47 47 H 1.08993 * 113.58378 * 270.13070 * 29 28 27 48 48 H 1.09004 * 113.57843 * 139.33452 * 29 28 27 49 49 H 1.08992 * 113.66499 * 13.65371 * 30 27 16 50 50 H 1.09000 * 113.65868 * 144.71110 * 30 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.3659 2.0062 1.1342 5 7 2.7984 3.2129 1.1821 6 6 2.9416 3.9582 0.1031 7 6 3.4543 5.3700 0.2248 8 6 2.6204 3.4426 -1.1415 9 6 2.1477 2.1249 -1.2014 10 6 1.7825 1.4999 -2.4939 11 8 1.2760 0.3955 -2.5130 12 7 2.0118 2.1563 -3.6484 13 6 1.6501 1.5385 -4.9265 14 1 0.8476 0.8069 -4.8317 15 6 2.8598 1.0278 -5.7303 16 6 2.1620 1.5805 -6.9888 17 1 1.5042 0.8598 -7.4745 18 7 3.0734 2.2435 -7.9247 19 6 3.3949 1.6397 -9.1110 20 1 2.9770 0.6746 -9.3564 21 6 4.2581 2.2681 -9.9981 22 7 4.5675 1.6875 -11.1381 23 14 4.9805 3.9378 -9.5740 24 1 6.2615 3.7525 -8.8461 25 1 5.2269 4.7022 -10.8230 26 1 4.0272 4.6860 -8.7156 27 6 1.4314 2.5465 -6.0554 28 6 1.8805 4.0013 -5.9142 29 6 0.7212 4.3602 -6.8616 30 6 0.0330 3.0656 -6.3919 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8934 -0.5138 -0.8901 35 1 1.8934 -0.5138 0.8899 36 1 2.6145 6.0511 0.3620 37 1 4.1236 5.4410 1.0822 38 1 3.9960 5.6392 -0.6820 39 1 2.7264 4.0381 -2.0362 40 1 2.4164 3.0377 -3.6331 41 1 3.7914 1.5392 -5.4882 42 1 2.9590 -0.0577 -5.7267 43 1 3.4490 3.1103 -7.7043 44 1 5.1704 2.1268 -11.7582 45 1 1.7615 4.4001 -4.9068 46 1 2.8664 4.1976 -6.3354 47 1 0.9996 4.3483 -7.9153 48 1 0.1879 5.2664 -6.5743 49 1 -0.4567 2.5145 -7.1947 50 1 -0.6050 3.2013 -5.5187 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078663099.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:36:08 Heat of formation + Delta-G solvation = 56.807379 kcal Electronic energy + Delta-G solvation = -30721.021135 eV Core-core repulsion = 26749.667848 eV Total energy + Delta-G solvation = -3971.353287 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.59730 -41.84401 -40.13149 -36.51960 -36.30321 -35.62153 -34.94966 -34.04142 -32.76003 -31.99110 -29.00879 -26.97629 -26.80312 -26.18577 -25.58378 -25.22034 -23.63112 -22.81455 -21.83851 -21.74018 -20.21909 -19.23512 -18.87282 -18.26552 -17.36689 -17.09295 -16.64023 -16.53251 -16.43055 -16.29796 -15.76201 -15.62838 -15.13514 -15.00679 -14.83055 -14.56596 -14.24831 -14.08641 -13.87581 -13.73767 -13.47942 -13.27416 -13.20624 -13.18101 -12.96431 -12.78488 -12.75750 -12.45938 -12.22436 -12.06815 -11.99160 -11.88034 -11.83861 -11.43611 -11.39405 -11.36060 -11.19629 -11.06982 -10.78129 -10.61852 -10.49817 -9.97413 -9.25761 -8.01607 -5.34689 -0.81608 -0.25988 1.35599 1.40763 1.48109 1.60103 1.84659 2.42801 2.48595 2.81839 3.13441 3.23848 3.28016 3.41436 3.44465 3.57003 3.63784 3.72397 3.81332 3.90186 3.97907 4.02010 4.16781 4.20876 4.24371 4.40109 4.50440 4.53879 4.60504 4.66399 4.72066 4.74493 4.77038 4.83958 4.90320 4.96678 4.98459 5.04122 5.09243 5.11201 5.15645 5.18646 5.27202 5.28245 5.36140 5.42794 5.58649 5.62005 5.79559 6.23047 6.37066 7.00822 7.09015 7.54413 7.84725 8.04860 9.20154 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.014111 B = 0.002882 C = 0.002685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.757325 B = 9711.918909 C =10427.024020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.075 4.075 3 C 0.108 3.892 4 N -0.267 5.267 5 N -0.255 5.255 6 C 0.060 3.940 7 C -0.101 4.101 8 C -0.068 4.068 9 C -0.137 4.137 10 C 0.562 3.438 11 O -0.538 6.538 12 N -0.689 5.689 13 C 0.154 3.846 14 H 0.113 0.887 15 C -0.171 4.171 16 C 0.178 3.822 17 H 0.074 0.926 18 N -0.730 5.730 19 C -0.231 4.231 20 H 0.055 0.945 21 C -0.065 4.065 22 N -0.986 5.986 23 Si 0.950 3.050 24 H -0.280 1.280 25 H -0.300 1.300 26 H -0.242 1.242 27 C -0.113 4.113 28 C -0.115 4.115 29 C -0.135 4.135 30 C -0.118 4.118 31 H 0.049 0.951 32 H 0.075 0.925 33 H 0.050 0.950 34 H 0.099 0.901 35 H 0.084 0.916 36 H 0.101 0.899 37 H 0.082 0.918 38 H 0.108 0.892 39 H 0.192 0.808 40 H 0.411 0.589 41 H 0.079 0.921 42 H 0.057 0.943 43 H 0.369 0.631 44 H 0.257 0.743 45 H 0.115 0.885 46 H 0.058 0.942 47 H 0.057 0.943 48 H 0.086 0.914 49 H 0.058 0.942 50 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.502 9.439 23.794 26.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.113 4.113 3 C -0.037 4.037 4 N -0.107 5.107 5 N -0.097 5.097 6 C -0.086 4.086 7 C -0.159 4.159 8 C -0.097 4.097 9 C -0.151 4.151 10 C 0.348 3.652 11 O -0.416 6.416 12 N -0.340 5.340 13 C 0.049 3.951 14 H 0.131 0.869 15 C -0.212 4.212 16 C 0.067 3.933 17 H 0.092 0.908 18 N -0.372 5.372 19 C -0.362 4.362 20 H 0.073 0.927 21 C -0.256 4.256 22 N -0.636 5.636 23 Si 0.777 3.223 24 H -0.206 1.206 25 H -0.227 1.227 26 H -0.166 1.166 27 C -0.115 4.115 28 C -0.152 4.152 29 C -0.173 4.173 30 C -0.156 4.156 31 H 0.068 0.932 32 H 0.094 0.906 33 H 0.069 0.931 34 H 0.117 0.883 35 H 0.102 0.898 36 H 0.119 0.881 37 H 0.101 0.899 38 H 0.127 0.873 39 H 0.209 0.791 40 H 0.250 0.750 41 H 0.098 0.902 42 H 0.075 0.925 43 H 0.205 0.795 44 H 0.065 0.935 45 H 0.133 0.867 46 H 0.076 0.924 47 H 0.076 0.924 48 H 0.105 0.895 49 H 0.077 0.923 50 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -7.718 8.388 25.242 27.696 hybrid contribution 0.895 0.786 -2.049 2.370 sum -6.822 9.174 23.193 25.858 Atomic orbital electron populations 1.21521 0.92910 1.02983 1.01029 1.20676 0.97667 0.88534 1.04457 1.23262 0.92519 0.99034 0.88929 1.73013 1.09202 1.03937 1.24592 1.72759 1.08514 0.99680 1.28787 1.23469 0.95502 1.00105 0.89487 1.20882 1.02697 0.86608 1.05673 1.22969 0.92201 0.93542 1.00993 1.21111 1.02671 0.96336 0.94956 1.17986 0.78610 0.85107 0.83470 1.90755 1.43784 1.19983 1.87090 1.45666 1.62219 1.21521 1.04590 1.21976 0.97489 0.95747 0.79917 0.86942 1.24170 0.98453 1.00721 0.97902 1.21309 0.90875 0.93594 0.87491 0.90772 1.42559 1.54687 1.21510 1.18435 1.19080 1.21282 1.01552 0.94270 0.92713 1.25505 1.01090 1.02649 0.96328 1.69893 1.41015 1.41166 1.11575 0.85491 0.79099 0.80453 0.77265 1.20597 1.22659 1.16638 1.23403 0.98299 0.94849 0.94983 1.22592 0.98676 0.92796 1.01139 1.22710 0.97401 0.98267 0.98887 1.22725 0.94810 0.96732 1.01313 0.93197 0.90650 0.93114 0.88298 0.89776 0.88059 0.89883 0.87322 0.79070 0.75042 0.90197 0.92463 0.79543 0.93453 0.86702 0.92376 0.92432 0.89514 0.92323 0.88150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.48 9.51 71.98 0.68 -1.80 16 2 C -0.07 -1.59 5.48 29.85 0.16 -1.42 16 3 C 0.11 2.45 6.16 42.91 0.26 2.71 16 4 N -0.27 -6.66 11.42 -46.95 -0.54 -7.20 16 5 N -0.26 -5.71 11.41 -47.70 -0.54 -6.26 16 6 C 0.06 0.89 6.86 42.61 0.29 1.18 16 7 C -0.10 -0.67 10.19 71.23 0.73 0.05 16 8 C -0.07 -0.87 9.34 22.79 0.21 -0.65 16 9 C -0.14 -2.61 5.92 -19.83 -0.12 -2.72 16 10 C 0.56 11.85 7.74 86.87 0.67 12.52 16 11 O -0.54 -14.32 11.65 -3.77 -0.04 -14.36 16 12 N -0.69 -12.18 5.23 -443.75 -2.32 -14.50 16 13 C 0.15 3.52 4.09 45.28 0.19 3.71 16 14 H 0.11 2.78 7.50 -2.39 -0.02 2.76 16 15 C -0.17 -5.02 7.70 31.30 0.24 -4.77 16 16 C 0.18 6.01 4.36 45.35 0.20 6.20 16 17 H 0.07 2.73 8.10 -2.39 -0.02 2.71 16 18 N -0.73 -30.94 5.13 -321.24 -1.65 -32.59 16 19 C -0.23 -12.56 10.45 84.03 0.88 -11.68 16 20 H 0.05 3.32 8.06 -2.91 -0.02 3.29 16 21 C -0.06 -3.67 5.50 84.86 0.47 -3.21 16 22 N -0.99 -62.14 13.97 21.65 0.30 -61.83 16 23 Si 0.95 43.01 27.74 68.60 1.90 44.92 16 24 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 25 H -0.30 -13.99 7.11 99.48 0.71 -13.29 16 26 H -0.24 -9.46 6.52 99.48 0.65 -8.81 16 27 C -0.11 -2.70 1.07 -52.31 -0.06 -2.76 16 28 C -0.11 -2.28 6.78 30.89 0.21 -2.07 16 29 C -0.14 -2.97 8.08 31.23 0.25 -2.72 16 30 C -0.12 -2.55 7.84 30.89 0.24 -2.30 16 31 H 0.05 1.09 6.91 -2.39 -0.02 1.08 16 32 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.10 2.34 5.90 -2.38 -0.01 2.32 16 35 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 37 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 38 H 0.11 0.19 8.09 -2.39 -0.02 0.17 16 39 H 0.19 0.80 6.65 -2.91 -0.02 0.78 16 40 H 0.41 4.89 5.20 -92.71 -0.48 4.41 16 41 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 42 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 43 H 0.37 14.71 3.78 -92.71 -0.35 14.36 16 44 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 45 H 0.11 1.35 6.99 -2.39 -0.02 1.33 16 46 H 0.06 1.37 6.42 -2.39 -0.02 1.36 16 47 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 48 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 49 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 50 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -73.65 395.83 2.71 -70.94 By element: Atomic # 1 Polarization: 30.54 SS G_CDS: 0.08 Total: 30.62 kcal Atomic # 6 Polarization: -15.26 SS G_CDS: 5.52 Total: -9.74 kcal Atomic # 7 Polarization: -117.63 SS G_CDS: -4.75 Total: -122.38 kcal Atomic # 8 Polarization: -14.32 SS G_CDS: -0.04 Total: -14.36 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 1.90 Total: 44.92 kcal Total: -73.65 2.71 -70.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078663099.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.752 kcal (2) G-P(sol) polarization free energy of solvation -73.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds