Wall clock time and date at job start Wed Apr 1 2020 03:52:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47299 * 2 1 4 4 C 1.50703 * 109.47008 * 119.99762 * 2 1 3 5 5 N 1.32159 * 120.53552 * 332.16584 * 4 2 1 6 6 C 1.31860 * 120.96660 * 180.30967 * 5 4 2 7 7 N 1.31883 * 122.09356 * 359.65435 * 6 5 4 8 8 C 1.32138 * 120.96654 * 0.02587 * 7 6 5 9 9 C 1.39931 * 120.53909 * 151.85304 * 4 2 1 10 10 C 1.47832 * 120.93614 * 0.02562 * 9 4 2 11 11 O 1.21547 * 120.00517 * 5.72721 * 10 9 4 12 12 N 1.34777 * 119.99637 * 185.73383 * 10 9 4 13 13 C 1.46506 * 119.99909 * 179.97438 * 12 10 9 14 14 H 1.08998 * 112.88326 * 333.15560 * 13 12 10 15 15 C 1.53952 * 113.66272 * 104.50193 * 13 12 10 16 16 C 1.53944 * 87.29487 * 89.82868 * 15 13 12 17 17 H 1.09004 * 113.66277 * 139.30058 * 16 15 13 18 18 N 1.46504 * 113.66718 * 270.26344 * 16 15 13 19 19 C 1.36931 * 119.99951 * 255.77173 * 18 16 15 20 20 H 1.08005 * 119.99958 * 359.72312 * 19 18 16 21 21 C 1.38811 * 119.99920 * 179.71909 * 19 18 16 22 22 N 1.31611 * 120.00145 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 120.00096 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.46952 * 0.02562 * 23 21 19 25 25 H 1.48496 * 109.47069 * 120.00050 * 23 21 19 26 26 H 1.48494 * 109.47304 * 240.00397 * 23 21 19 27 27 C 1.52904 * 113.74592 * 201.73039 * 13 12 10 28 28 C 1.52908 * 121.13848 * 36.14271 * 27 13 12 29 29 C 1.53948 * 86.78350 * 100.81294 * 28 27 13 30 30 C 1.52908 * 121.13150 * 144.69880 * 27 13 12 31 31 H 1.08998 * 109.47088 * 300.00391 * 1 2 3 32 32 H 1.09004 * 109.46656 * 60.00279 * 1 2 3 33 33 H 1.08997 * 109.47621 * 179.97438 * 1 2 3 34 34 H 1.08998 * 109.47088 * 239.99609 * 2 1 3 35 35 H 1.09003 * 109.47450 * 179.97438 * 3 2 1 36 36 H 1.08994 * 109.47055 * 300.00016 * 3 2 1 37 37 H 1.09003 * 109.46920 * 59.99614 * 3 2 1 38 38 H 1.08002 * 118.95609 * 179.67976 * 6 5 4 39 39 H 1.07997 * 120.53333 * 180.02562 * 8 7 6 40 40 H 0.97002 * 120.00204 * 359.97438 * 12 10 9 41 41 H 1.09007 * 113.57968 * 335.22724 * 15 13 12 42 42 H 1.08995 * 113.65327 * 204.44572 * 15 13 12 43 43 H 0.96996 * 119.99504 * 75.48941 * 18 16 15 44 44 H 0.97004 * 120.00387 * 179.97438 * 22 21 19 45 45 H 1.08999 * 113.66122 * 215.28287 * 28 27 13 46 46 H 1.09005 * 113.66203 * 346.33692 * 28 27 13 47 47 H 1.09002 * 113.57907 * 270.13202 * 29 28 27 48 48 H 1.08998 * 113.65365 * 139.35189 * 29 28 27 49 49 H 1.08999 * 113.66270 * 13.65551 * 30 27 13 50 50 H 1.09002 * 113.66525 * 144.71398 * 30 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.3071 -0.7343 2.3351 6 6 1.7410 -1.3482 3.4184 7 7 2.9042 -1.9685 3.4539 8 6 3.6908 -1.9996 2.3926 9 6 3.2712 -1.3608 1.2201 10 6 4.1159 -1.3674 0.0069 11 8 3.7876 -0.7168 -0.9659 12 7 5.2501 -2.0949 -0.0205 13 6 6.0870 -2.1019 -1.2230 14 1 5.5221 -1.9035 -2.1337 15 6 7.3649 -1.2534 -1.0914 16 6 8.0621 -2.5181 -0.5581 17 1 9.0757 -2.6514 -0.9365 18 7 7.9724 -2.6702 0.8963 19 6 9.0609 -2.3985 1.6815 20 1 9.9868 -2.0764 1.2283 21 6 8.9741 -2.5370 3.0599 22 7 7.8459 -2.9299 3.6122 23 14 10.4588 -2.1657 4.1312 24 1 11.5954 -1.7448 3.2732 25 1 10.1240 -1.0732 5.0796 26 1 10.8369 -3.3834 4.8923 27 6 7.0083 -3.3179 -1.3249 28 6 6.5551 -4.6960 -0.8416 29 6 6.2860 -5.0302 -2.3200 30 6 7.3290 -3.9556 -2.6771 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3634 -1.0276 -0.0005 34 1 1.8933 -0.5139 -0.8899 35 1 3.1300 1.4425 0.0005 36 1 1.6767 1.9563 -0.8899 37 1 1.6766 1.9563 0.8900 38 1 1.1240 -1.3431 4.3049 39 1 4.6419 -2.5100 2.4293 40 1 5.5124 -2.6139 0.7559 41 1 7.2845 -0.4556 -0.3529 42 1 7.7603 -0.9073 -2.0463 43 1 7.1408 -2.9593 1.3032 44 1 7.7854 -3.0270 4.5754 45 1 7.3550 -5.2887 -0.3977 46 1 5.6546 -4.6700 -0.2279 47 1 5.2758 -4.7826 -2.6461 48 1 6.5857 -6.0395 -2.6018 49 1 7.0468 -3.3382 -3.5299 50 1 8.3463 -4.3404 -2.7491 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078815537.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:10 Heat of formation + Delta-G solvation = 69.271126 kcal Electronic energy + Delta-G solvation = -31605.592062 eV Core-core repulsion = 27634.779244 eV Total energy + Delta-G solvation = -3970.812818 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.39706 -40.56390 -38.65649 -36.11919 -35.28234 -33.76407 -33.14159 -32.43335 -31.30796 -29.81111 -27.12140 -25.71671 -25.43711 -24.83917 -24.39061 -24.01999 -22.75593 -20.95417 -20.54966 -20.13404 -18.65020 -17.78688 -17.20595 -17.04632 -16.55791 -15.67781 -15.37185 -15.22394 -15.03333 -14.57606 -14.46757 -14.28740 -14.03880 -13.85966 -13.57274 -13.22960 -13.05883 -12.89982 -12.55326 -12.18448 -12.11448 -12.01362 -11.61710 -11.58638 -11.50131 -11.47041 -11.21730 -11.00894 -11.00130 -10.90192 -10.74511 -10.49926 -10.23067 -10.14333 -9.88215 -9.82650 -9.61525 -9.47446 -9.37479 -9.19513 -8.93548 -8.62335 -7.10840 -5.92393 -3.20396 0.48916 1.07207 2.94578 3.18647 3.36403 3.43255 3.44843 3.82888 3.95857 4.13656 4.35272 4.44918 4.66469 4.74305 4.82997 4.90099 4.96748 5.08027 5.16516 5.19796 5.22715 5.26277 5.34824 5.48040 5.56647 5.68408 5.75047 5.79686 5.82064 5.87322 5.87767 5.94208 5.98898 6.04114 6.06531 6.07026 6.15176 6.25027 6.28769 6.33346 6.34268 6.44923 6.55294 6.63094 6.66999 6.86152 6.95236 6.99985 7.61867 7.68982 8.04396 8.26571 8.33063 9.38312 9.91473 10.25387 11.30719 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.009112 B = 0.004315 C = 0.003349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3072.249840 B = 6486.772115 C = 8358.862790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.059 4.059 3 C -0.128 4.128 4 C 0.238 3.762 5 N -0.525 5.525 6 C 0.311 3.689 7 N -0.520 5.520 8 C 0.197 3.803 9 C -0.245 4.245 10 C 0.572 3.428 11 O -0.533 6.533 12 N -0.690 5.690 13 C 0.153 3.847 14 H 0.094 0.906 15 C -0.185 4.185 16 C 0.179 3.821 17 H 0.065 0.935 18 N -0.700 5.700 19 C -0.243 4.243 20 H 0.074 0.926 21 C -0.008 4.008 22 N -0.932 5.932 23 Si 0.908 3.092 24 H -0.280 1.280 25 H -0.292 1.292 26 H -0.291 1.291 27 C -0.131 4.131 28 C -0.117 4.117 29 C -0.141 4.141 30 C -0.103 4.103 31 H 0.064 0.936 32 H 0.056 0.944 33 H 0.049 0.951 34 H 0.122 0.878 35 H 0.061 0.939 36 H 0.063 0.937 37 H 0.049 0.951 38 H 0.199 0.801 39 H 0.180 0.820 40 H 0.406 0.594 41 H 0.072 0.928 42 H 0.078 0.922 43 H 0.377 0.623 44 H 0.258 0.742 45 H 0.088 0.912 46 H 0.060 0.940 47 H 0.074 0.926 48 H 0.063 0.937 49 H 0.066 0.934 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.016 0.847 -9.152 14.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.077 4.077 3 C -0.186 4.186 4 C 0.091 3.909 5 N -0.239 5.239 6 C 0.024 3.976 7 N -0.233 5.233 8 C 0.030 3.970 9 C -0.253 4.253 10 C 0.358 3.642 11 O -0.412 6.412 12 N -0.341 5.341 13 C 0.048 3.952 14 H 0.112 0.888 15 C -0.227 4.227 16 C 0.067 3.933 17 H 0.083 0.917 18 N -0.339 5.339 19 C -0.374 4.374 20 H 0.092 0.908 21 C -0.204 4.204 22 N -0.580 5.580 23 Si 0.739 3.261 24 H -0.206 1.206 25 H -0.219 1.219 26 H -0.218 1.218 27 C -0.134 4.134 28 C -0.154 4.154 29 C -0.179 4.179 30 C -0.141 4.141 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.140 0.860 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.068 0.932 38 H 0.215 0.785 39 H 0.197 0.803 40 H 0.245 0.755 41 H 0.091 0.909 42 H 0.097 0.903 43 H 0.212 0.788 44 H 0.067 0.933 45 H 0.107 0.893 46 H 0.079 0.921 47 H 0.092 0.908 48 H 0.081 0.919 49 H 0.084 0.916 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -11.625 1.321 -8.875 14.685 hybrid contribution 1.240 -0.144 0.798 1.482 sum -10.384 1.178 -8.077 13.208 Atomic orbital electron populations 1.21742 0.93998 1.01720 1.02016 1.20567 0.96108 0.96921 0.94152 1.21623 1.01888 0.93565 1.01517 1.21916 0.87557 0.87647 0.93768 1.68330 1.35590 1.19999 0.99965 1.25244 0.90083 0.86670 0.95635 1.68509 1.05683 1.19292 1.29809 1.23784 0.97742 0.89196 0.86246 1.21645 0.99262 1.06743 0.97640 1.17690 0.80626 0.79520 0.86395 1.90665 1.71549 1.42933 1.36042 1.45645 1.22304 1.48425 1.17774 1.21446 0.90354 0.95999 0.87436 0.88843 1.24293 0.96786 1.00333 1.01327 1.21062 0.95511 0.91425 0.85316 0.91657 1.42065 1.13225 1.79762 0.98885 1.19297 0.91495 1.38207 0.88355 0.90833 1.24699 0.97261 1.01862 0.96596 1.69577 1.24764 1.53131 1.10569 0.86112 0.81962 0.77485 0.80564 1.20556 1.21871 1.21800 1.23412 0.98471 0.93436 0.98049 1.22527 1.01205 0.96179 0.95535 1.22860 0.99033 0.98595 0.97404 1.22478 0.99498 0.97050 0.95061 0.91659 0.92509 0.93158 0.86038 0.91983 0.91774 0.93161 0.78501 0.80280 0.75539 0.90917 0.90344 0.78841 0.93251 0.89301 0.92138 0.90769 0.91858 0.91563 0.89557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 8.74 37.16 0.32 -1.19 16 2 C -0.06 -0.77 2.39 -91.77 -0.22 -0.99 16 3 C -0.13 -1.62 8.88 37.16 0.33 -1.29 16 4 C 0.24 3.50 5.83 -81.82 -0.48 3.03 16 5 N -0.52 -7.36 9.34 -10.48 -0.10 -7.45 16 6 C 0.31 4.16 12.27 -92.02 -1.13 3.03 16 7 N -0.52 -8.16 10.42 -14.24 -0.15 -8.31 16 8 C 0.20 3.17 10.80 -16.78 -0.18 2.99 16 9 C -0.25 -3.84 5.91 -104.69 -0.62 -4.46 16 10 C 0.57 9.33 7.73 -12.34 -0.10 9.24 16 11 O -0.53 -9.14 12.07 5.32 0.06 -9.07 16 12 N -0.69 -11.14 4.68 -54.32 -0.25 -11.39 16 13 C 0.15 2.38 4.07 -67.48 -0.27 2.10 16 14 H 0.09 1.43 7.54 -51.93 -0.39 1.04 16 15 C -0.19 -3.11 7.68 -25.75 -0.20 -3.31 16 16 C 0.18 3.25 4.35 -67.48 -0.29 2.95 16 17 H 0.07 1.20 8.12 -51.93 -0.42 0.78 16 18 N -0.70 -15.57 4.97 -52.99 -0.26 -15.83 16 19 C -0.24 -6.21 9.98 -15.06 -0.15 -6.36 16 20 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 21 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 22 N -0.93 -25.62 13.06 55.49 0.72 -24.90 16 23 Si 0.91 21.42 29.55 -169.99 -5.02 16.40 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 25 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 26 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 27 C -0.13 -1.95 0.77 -154.72 -0.12 -2.07 16 28 C -0.12 -1.71 7.18 -26.28 -0.19 -1.89 16 29 C -0.14 -1.70 8.08 -25.75 -0.21 -1.91 16 30 C -0.10 -1.26 7.84 -26.28 -0.21 -1.46 16 31 H 0.06 0.73 7.80 -51.93 -0.40 0.33 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.12 1.74 5.62 -51.93 -0.29 1.45 16 35 H 0.06 0.90 7.35 -51.93 -0.38 0.52 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.20 1.87 8.06 -52.49 -0.42 1.45 16 39 H 0.18 3.00 6.58 -52.49 -0.35 2.66 16 40 H 0.41 6.90 4.11 -40.82 -0.17 6.73 16 41 H 0.07 1.41 8.14 -51.92 -0.42 0.99 16 42 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.38 8.55 5.39 -40.82 -0.22 8.33 16 44 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 45 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 46 H 0.06 0.90 7.51 -51.93 -0.39 0.51 16 47 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 48 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 49 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 50 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 LS Contribution 397.18 15.07 5.99 5.99 Total: -1.00 -28.32 397.18 -10.45 -38.77 By element: Atomic # 1 Polarization: 25.34 SS G_CDS: -7.63 Total: 17.70 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: -3.80 Total: -1.91 kcal Atomic # 7 Polarization: -67.84 SS G_CDS: -0.04 Total: -67.88 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: 0.06 Total: -9.07 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -28.32 -10.45 -38.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078815537.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.043 kcal (2) G-P(sol) polarization free energy of solvation -28.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.772 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds