Wall clock time and date at job start Wed Apr 1 2020 03:52:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47299 * 2 1 4 4 C 1.50703 * 109.47008 * 119.99762 * 2 1 3 5 5 N 1.32159 * 120.53552 * 332.16584 * 4 2 1 6 6 C 1.31860 * 120.96660 * 180.30967 * 5 4 2 7 7 N 1.31883 * 122.09356 * 359.65435 * 6 5 4 8 8 C 1.32138 * 120.96654 * 0.02587 * 7 6 5 9 9 C 1.39931 * 120.53909 * 151.85304 * 4 2 1 10 10 C 1.47832 * 120.93614 * 0.02562 * 9 4 2 11 11 O 1.21547 * 120.00517 * 5.72721 * 10 9 4 12 12 N 1.34777 * 119.99637 * 185.73383 * 10 9 4 13 13 C 1.46506 * 119.99909 * 179.97438 * 12 10 9 14 14 H 1.08998 * 112.88326 * 333.15560 * 13 12 10 15 15 C 1.53952 * 113.66272 * 104.50193 * 13 12 10 16 16 C 1.53944 * 87.29487 * 89.82868 * 15 13 12 17 17 H 1.09004 * 113.66277 * 139.30058 * 16 15 13 18 18 N 1.46504 * 113.66718 * 270.26344 * 16 15 13 19 19 C 1.36931 * 119.99951 * 255.77173 * 18 16 15 20 20 H 1.08005 * 119.99958 * 359.72312 * 19 18 16 21 21 C 1.38811 * 119.99920 * 179.71909 * 19 18 16 22 22 N 1.31611 * 120.00145 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 120.00096 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.46952 * 0.02562 * 23 21 19 25 25 H 1.48496 * 109.47069 * 120.00050 * 23 21 19 26 26 H 1.48494 * 109.47304 * 240.00397 * 23 21 19 27 27 C 1.52904 * 113.74592 * 201.73039 * 13 12 10 28 28 C 1.52908 * 121.13848 * 36.14271 * 27 13 12 29 29 C 1.53948 * 86.78350 * 100.81294 * 28 27 13 30 30 C 1.52908 * 121.13150 * 144.69880 * 27 13 12 31 31 H 1.08998 * 109.47088 * 300.00391 * 1 2 3 32 32 H 1.09004 * 109.46656 * 60.00279 * 1 2 3 33 33 H 1.08997 * 109.47621 * 179.97438 * 1 2 3 34 34 H 1.08998 * 109.47088 * 239.99609 * 2 1 3 35 35 H 1.09003 * 109.47450 * 179.97438 * 3 2 1 36 36 H 1.08994 * 109.47055 * 300.00016 * 3 2 1 37 37 H 1.09003 * 109.46920 * 59.99614 * 3 2 1 38 38 H 1.08002 * 118.95609 * 179.67976 * 6 5 4 39 39 H 1.07997 * 120.53333 * 180.02562 * 8 7 6 40 40 H 0.97002 * 120.00204 * 359.97438 * 12 10 9 41 41 H 1.09007 * 113.57968 * 335.22724 * 15 13 12 42 42 H 1.08995 * 113.65327 * 204.44572 * 15 13 12 43 43 H 0.96996 * 119.99504 * 75.48941 * 18 16 15 44 44 H 0.97004 * 120.00387 * 179.97438 * 22 21 19 45 45 H 1.08999 * 113.66122 * 215.28287 * 28 27 13 46 46 H 1.09005 * 113.66203 * 346.33692 * 28 27 13 47 47 H 1.09002 * 113.57907 * 270.13202 * 29 28 27 48 48 H 1.08998 * 113.65365 * 139.35189 * 29 28 27 49 49 H 1.08999 * 113.66270 * 13.65551 * 30 27 13 50 50 H 1.09002 * 113.66525 * 144.71398 * 30 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.3071 -0.7343 2.3351 6 6 1.7410 -1.3482 3.4184 7 7 2.9042 -1.9685 3.4539 8 6 3.6908 -1.9996 2.3926 9 6 3.2712 -1.3608 1.2201 10 6 4.1159 -1.3674 0.0069 11 8 3.7876 -0.7168 -0.9659 12 7 5.2501 -2.0949 -0.0205 13 6 6.0870 -2.1019 -1.2230 14 1 5.5221 -1.9035 -2.1337 15 6 7.3649 -1.2534 -1.0914 16 6 8.0621 -2.5181 -0.5581 17 1 9.0757 -2.6514 -0.9365 18 7 7.9724 -2.6702 0.8963 19 6 9.0609 -2.3985 1.6815 20 1 9.9868 -2.0764 1.2283 21 6 8.9741 -2.5370 3.0599 22 7 7.8459 -2.9299 3.6122 23 14 10.4588 -2.1657 4.1312 24 1 11.5954 -1.7448 3.2732 25 1 10.1240 -1.0732 5.0796 26 1 10.8369 -3.3834 4.8923 27 6 7.0083 -3.3179 -1.3249 28 6 6.5551 -4.6960 -0.8416 29 6 6.2860 -5.0302 -2.3200 30 6 7.3290 -3.9556 -2.6771 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3634 -1.0276 -0.0005 34 1 1.8933 -0.5139 -0.8899 35 1 3.1300 1.4425 0.0005 36 1 1.6767 1.9563 -0.8899 37 1 1.6766 1.9563 0.8900 38 1 1.1240 -1.3431 4.3049 39 1 4.6419 -2.5100 2.4293 40 1 5.5124 -2.6139 0.7559 41 1 7.2845 -0.4556 -0.3529 42 1 7.7603 -0.9073 -2.0463 43 1 7.1408 -2.9593 1.3032 44 1 7.7854 -3.0270 4.5754 45 1 7.3550 -5.2887 -0.3977 46 1 5.6546 -4.6700 -0.2279 47 1 5.2758 -4.7826 -2.6461 48 1 6.5857 -6.0395 -2.6018 49 1 7.0468 -3.3382 -3.5299 50 1 8.3463 -4.3404 -2.7491 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078815537.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:09 Heat of formation + Delta-G solvation = 54.800960 kcal Electronic energy + Delta-G solvation = -31606.219536 eV Core-core repulsion = 27634.779244 eV Total energy + Delta-G solvation = -3971.440291 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.59477 -41.81434 -39.92030 -37.21637 -36.62267 -35.34444 -34.42983 -33.77634 -32.59109 -31.53309 -28.07578 -26.90261 -26.81991 -26.04535 -25.73164 -25.32916 -24.24298 -22.12217 -21.78996 -21.36438 -20.03459 -19.08172 -18.86973 -18.24553 -17.70491 -16.95182 -16.80580 -16.48433 -16.22966 -16.18791 -15.67852 -15.55445 -15.32066 -15.00743 -14.95281 -14.75510 -14.47202 -13.93674 -13.89464 -13.35876 -13.21819 -13.15373 -13.03100 -12.91471 -12.78659 -12.72922 -12.54063 -12.46254 -12.24318 -12.12259 -12.04008 -11.97026 -11.82446 -11.63549 -11.30054 -11.13654 -10.84220 -10.81093 -10.68904 -10.60789 -10.37242 -9.92061 -8.96336 -7.94888 -5.20640 -0.68730 -0.13400 1.46564 1.48949 1.56603 1.68124 1.92772 2.55514 2.64846 2.87704 3.01302 3.18569 3.37754 3.41093 3.48567 3.65243 3.70604 3.82823 3.94671 4.04239 4.10514 4.13511 4.21286 4.23095 4.30529 4.40514 4.56300 4.64620 4.67400 4.78030 4.83021 4.86876 4.95559 4.96700 4.97063 5.02492 5.09959 5.10093 5.14316 5.18977 5.21909 5.24173 5.32232 5.46112 5.52565 5.55047 5.63495 5.66677 5.78254 6.28430 6.36988 6.88952 7.01207 7.36042 8.09184 8.32969 9.27783 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.009112 B = 0.004315 C = 0.003349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3072.249840 B = 6486.772115 C = 8358.862790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.058 4.058 3 C -0.122 4.122 4 C 0.236 3.764 5 N -0.522 5.522 6 C 0.314 3.686 7 N -0.540 5.540 8 C 0.191 3.809 9 C -0.257 4.257 10 C 0.571 3.429 11 O -0.542 6.542 12 N -0.692 5.692 13 C 0.156 3.844 14 H 0.104 0.896 15 C -0.177 4.177 16 C 0.162 3.838 17 H 0.063 0.937 18 N -0.709 5.709 19 C -0.239 4.239 20 H 0.074 0.926 21 C -0.062 4.062 22 N -0.958 5.958 23 Si 0.962 3.038 24 H -0.270 1.270 25 H -0.300 1.300 26 H -0.295 1.295 27 C -0.122 4.122 28 C -0.125 4.125 29 C -0.127 4.127 30 C -0.092 4.092 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.048 0.952 34 H 0.111 0.889 35 H 0.037 0.963 36 H 0.083 0.917 37 H 0.053 0.947 38 H 0.238 0.762 39 H 0.165 0.835 40 H 0.401 0.599 41 H 0.041 0.959 42 H 0.105 0.895 43 H 0.372 0.628 44 H 0.251 0.749 45 H 0.072 0.928 46 H 0.050 0.950 47 H 0.082 0.918 48 H 0.079 0.921 49 H 0.086 0.914 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.982 1.066 -10.868 16.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.077 4.077 3 C -0.180 4.180 4 C 0.089 3.911 5 N -0.236 5.236 6 C 0.028 3.972 7 N -0.253 5.253 8 C 0.024 3.976 9 C -0.264 4.264 10 C 0.358 3.642 11 O -0.421 6.421 12 N -0.342 5.342 13 C 0.051 3.949 14 H 0.122 0.878 15 C -0.219 4.219 16 C 0.052 3.948 17 H 0.081 0.919 18 N -0.348 5.348 19 C -0.371 4.371 20 H 0.092 0.908 21 C -0.256 4.256 22 N -0.608 5.608 23 Si 0.792 3.208 24 H -0.195 1.195 25 H -0.228 1.228 26 H -0.222 1.222 27 C -0.124 4.124 28 C -0.163 4.163 29 C -0.164 4.164 30 C -0.130 4.130 31 H 0.084 0.916 32 H 0.094 0.906 33 H 0.067 0.933 34 H 0.128 0.872 35 H 0.056 0.944 36 H 0.102 0.898 37 H 0.072 0.928 38 H 0.254 0.746 39 H 0.182 0.818 40 H 0.238 0.762 41 H 0.060 0.940 42 H 0.124 0.876 43 H 0.206 0.794 44 H 0.060 0.940 45 H 0.090 0.910 46 H 0.069 0.931 47 H 0.100 0.900 48 H 0.098 0.902 49 H 0.105 0.895 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -12.578 1.545 -10.643 16.549 hybrid contribution 1.534 -0.183 1.309 2.025 sum -11.045 1.363 -9.333 14.524 Atomic orbital electron populations 1.21689 0.92062 1.01950 1.02980 1.20595 0.97623 0.96680 0.92807 1.21583 1.00244 0.93537 1.02681 1.22266 0.87111 0.87107 0.94641 1.68441 1.35231 1.20029 0.99914 1.26036 0.89473 0.85058 0.96589 1.68530 1.06691 1.20375 1.29752 1.23598 0.97556 0.89537 0.86904 1.21615 0.99912 1.07674 0.97212 1.17795 0.80642 0.79248 0.86529 1.90652 1.71835 1.43274 1.36375 1.45702 1.22411 1.48294 1.17823 1.21476 0.90004 0.95965 0.87469 0.87802 1.24215 0.97486 0.98652 1.01567 1.21309 0.96562 0.93474 0.83498 0.91878 1.42148 1.12249 1.79837 1.00586 1.19590 0.92268 1.36411 0.88858 0.90846 1.25320 0.99332 1.03120 0.97794 1.69705 1.26127 1.54895 1.10079 0.85248 0.79926 0.76626 0.78975 1.19460 1.22767 1.22216 1.23356 0.96416 0.93040 0.99561 1.22531 1.00304 0.95994 0.97463 1.22798 0.99488 0.99567 0.94571 1.22515 1.00103 0.96676 0.93733 0.91650 0.90565 0.93286 0.87166 0.94419 0.89804 0.92785 0.74642 0.81835 0.76167 0.94018 0.87646 0.79366 0.94029 0.90961 0.93076 0.89961 0.90220 0.89513 0.88776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.59 8.74 71.98 0.63 -1.97 16 2 C -0.06 -1.47 2.39 -11.54 -0.03 -1.50 16 3 C -0.12 -2.98 8.88 71.98 0.64 -2.34 16 4 C 0.24 6.84 5.83 42.92 0.25 7.09 16 5 N -0.52 -14.03 9.34 -187.05 -1.75 -15.78 16 6 C 0.31 8.07 12.27 180.84 2.22 10.28 16 7 N -0.54 -17.10 10.42 -198.97 -2.07 -19.17 16 8 C 0.19 6.40 10.80 85.06 0.92 7.32 16 9 C -0.26 -8.21 5.91 -19.91 -0.12 -8.33 16 10 C 0.57 18.98 7.73 86.78 0.67 19.65 16 11 O -0.54 -18.51 12.07 -3.86 -0.05 -18.56 16 12 N -0.69 -22.85 4.68 -444.04 -2.08 -24.93 16 13 C 0.16 4.75 4.07 45.28 0.18 4.93 16 14 H 0.10 3.00 7.54 -2.39 -0.02 2.98 16 15 C -0.18 -5.88 7.68 31.23 0.24 -5.64 16 16 C 0.16 5.86 4.35 45.28 0.20 6.05 16 17 H 0.06 2.29 8.12 -2.39 -0.02 2.27 16 18 N -0.71 -32.32 4.97 -321.56 -1.60 -33.92 16 19 C -0.24 -12.47 9.98 84.03 0.84 -11.63 16 20 H 0.07 3.75 7.83 -2.91 -0.02 3.72 16 21 C -0.06 -3.38 5.50 84.86 0.47 -2.91 16 22 N -0.96 -54.33 13.06 21.65 0.28 -54.04 16 23 Si 0.96 44.82 29.55 68.60 2.03 46.84 16 24 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 25 H -0.30 -14.27 7.11 99.48 0.71 -13.57 16 26 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 27 C -0.12 -3.49 0.77 -52.32 -0.04 -3.53 16 28 C -0.13 -3.59 7.18 30.88 0.22 -3.37 16 29 C -0.13 -2.73 8.08 31.23 0.25 -2.48 16 30 C -0.09 -1.99 7.84 30.88 0.24 -1.75 16 31 H 0.06 1.32 7.80 -2.39 -0.02 1.30 16 32 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 33 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.11 3.08 5.62 -2.39 -0.01 3.07 16 35 H 0.04 1.09 7.35 -2.39 -0.02 1.07 16 36 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.24 3.91 8.06 -2.91 -0.02 3.88 16 39 H 0.16 5.93 6.58 -2.91 -0.02 5.91 16 40 H 0.40 14.31 4.11 -92.71 -0.38 13.92 16 41 H 0.04 1.64 8.14 -2.38 -0.02 1.62 16 42 H 0.11 2.89 8.14 -2.39 -0.02 2.88 16 43 H 0.37 17.58 5.39 -92.71 -0.50 17.08 16 44 H 0.25 14.07 8.31 -92.71 -0.77 13.30 16 45 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 46 H 0.05 1.54 7.51 -2.38 -0.02 1.53 16 47 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 48 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 49 H 0.09 1.57 8.14 -2.39 -0.02 1.56 16 50 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -61.71 397.18 2.64 -59.07 By element: Atomic # 1 Polarization: 50.50 SS G_CDS: 0.09 Total: 50.58 kcal Atomic # 6 Polarization: 2.11 SS G_CDS: 7.78 Total: 9.90 kcal Atomic # 7 Polarization: -140.63 SS G_CDS: -7.21 Total: -147.84 kcal Atomic # 8 Polarization: -18.51 SS G_CDS: -0.05 Total: -18.56 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.84 kcal Total: -61.71 2.64 -59.07 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078815537.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.875 kcal (2) G-P(sol) polarization free energy of solvation -61.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.074 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds