Wall clock time and date at job start Wed Apr 1 2020 03:24:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30757 * 125.60966 * 2 1 4 4 C 1.33575 * 109.14381 * 180.02562 * 3 2 1 5 5 C 1.35025 * 107.98202 * 359.94000 * 4 3 2 6 6 N 1.35309 * 125.62015 * 179.97438 * 2 1 3 7 7 H 0.96996 * 126.49827 * 0.04891 * 6 2 1 8 8 C 1.50657 * 124.45954 * 180.18929 * 5 4 3 9 9 C 1.53399 * 108.38114 * 16.39217 * 8 5 4 10 10 H 1.08998 * 109.47627 * 70.35861 * 9 8 5 11 11 C 1.50693 * 109.47696 * 190.36821 * 9 8 5 12 12 O 1.21285 * 120.00072 * 119.98697 * 11 9 8 13 13 N 1.34782 * 120.00221 * 299.99103 * 11 9 8 14 14 C 1.47805 * 135.00976 * 0.02562 * 13 11 9 15 15 C 1.54649 * 85.79332 * 153.80248 * 14 13 11 16 16 H 1.08998 * 114.44338 * 140.42787 * 15 14 13 17 17 C 1.53018 * 110.83720 * 270.23062 * 15 14 13 18 18 C 1.53100 * 109.45006 * 143.88527 * 17 15 14 19 19 N 1.46611 * 108.00525 * 301.02455 * 18 17 15 20 20 C 1.36939 * 119.89256 * 237.34936 * 19 18 17 21 21 H 1.08007 * 119.99630 * 25.08763 * 20 19 18 22 22 C 1.38811 * 120.00333 * 205.09042 * 20 19 18 23 23 N 1.31613 * 119.99936 * 13.88366 * 22 20 19 24 24 Si 1.86805 * 119.99995 * 193.88333 * 22 20 19 25 25 H 1.48505 * 109.46785 * 89.99947 * 24 22 20 26 26 H 1.48495 * 109.46900 * 209.99981 * 24 22 20 27 27 H 1.48500 * 109.47174 * 329.99892 * 24 22 20 28 28 C 1.45677 * 120.21971 * 57.33587 * 19 18 17 29 29 C 1.46897 * 135.08992 * 179.87279 * 13 11 9 30 30 H 1.08998 * 110.84149 * 94.70181 * 29 13 11 31 31 C 1.53125 * 109.44939 * 310.36674 * 9 8 5 32 32 C 1.50866 * 128.03171 * 179.97438 * 4 3 2 33 33 H 1.08997 * 109.47273 * 90.02994 * 1 2 3 34 34 H 1.09006 * 109.46764 * 210.02194 * 1 2 3 35 35 H 1.08996 * 109.47936 * 330.02470 * 1 2 3 36 36 H 1.08997 * 109.67638 * 256.67373 * 8 5 4 37 37 H 1.09001 * 109.68476 * 136.12121 * 8 5 4 38 38 H 1.09007 * 113.82520 * 39.58226 * 14 13 11 39 39 H 1.08999 * 113.92983 * 268.03402 * 14 13 11 40 40 H 1.09004 * 109.47562 * 23.88488 * 17 15 14 41 41 H 1.09008 * 109.47285 * 263.88181 * 17 15 14 42 42 H 1.09001 * 109.74909 * 181.39841 * 18 17 15 43 43 H 1.08998 * 109.75213 * 60.65683 * 18 17 15 44 44 H 0.97000 * 119.99883 * 179.97438 * 23 22 20 45 45 H 1.08993 * 108.72311 * 81.73319 * 28 19 18 46 46 H 1.09003 * 108.71474 * 199.88268 * 28 19 18 47 47 H 1.09002 * 109.45669 * 190.03177 * 31 9 8 48 48 H 1.08998 * 109.45600 * 310.00386 * 31 9 8 49 49 H 1.08996 * 109.67675 * 76.91781 * 32 4 3 50 50 H 1.09001 * 109.70924 * 316.39229 * 32 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2684 1.0631 0.0000 4 6 3.5493 0.6844 -0.0006 5 6 3.5850 -0.6653 0.0004 6 7 2.2951 -1.0999 0.0005 7 1 1.9972 -2.0230 0.0002 8 6 4.8494 -1.4846 0.0043 9 6 6.0137 -0.5754 0.4176 10 1 5.9202 -0.3226 1.4737 11 6 7.3183 -1.2933 0.1864 12 8 8.1414 -0.8262 -0.5722 13 7 7.5706 -2.4544 0.8226 14 6 6.8343 -3.3002 1.7855 15 6 7.6664 -4.4733 1.2172 16 1 8.0038 -5.1909 1.9651 17 6 6.9517 -5.1227 0.0302 18 6 7.9860 -5.5611 -1.0100 19 7 8.7356 -4.3738 -1.4319 20 6 8.7682 -4.0218 -2.7549 21 1 7.9690 -4.3262 -3.4145 22 6 9.8284 -3.2738 -3.2482 23 7 10.9241 -3.1337 -2.5326 24 14 9.6999 -2.4660 -4.9276 25 1 9.1311 -1.1023 -4.7787 26 1 11.0507 -2.3750 -5.5377 27 1 8.8159 -3.2785 -5.8014 28 6 9.4457 -3.5672 -0.4484 29 6 8.6891 -3.4064 0.8455 30 1 9.3632 -3.1928 1.6749 31 6 5.9812 0.7067 -0.4190 32 6 4.7775 1.5606 -0.0013 33 1 -0.3634 -0.0005 -1.0276 34 1 -0.3633 -0.8899 0.5142 35 1 -0.3635 0.8901 0.5134 36 1 5.0314 -1.8834 -0.9937 37 1 4.7533 -2.3046 0.7160 38 1 5.7669 -3.3764 1.5782 39 1 7.0503 -3.0724 2.8293 40 1 6.2665 -4.4038 -0.4190 41 1 6.3916 -5.9922 0.3747 42 1 7.4803 -6.0021 -1.8690 43 1 8.6666 -6.2890 -0.5686 44 1 11.6651 -2.6113 -2.8775 45 1 10.4052 -4.0386 -0.2363 46 1 9.6281 -2.5796 -0.8720 47 1 6.9000 1.2700 -0.2559 48 1 5.8954 0.4494 -1.4746 49 1 4.9419 1.9630 0.9982 50 1 4.6449 2.3788 -0.7091 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084466220.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:56 Heat of formation + Delta-G solvation = 76.936699 kcal Electronic energy + Delta-G solvation = -31938.250908 eV Core-core repulsion = 27967.770494 eV Total energy + Delta-G solvation = -3970.480414 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.41393 -40.50018 -38.22786 -35.92064 -35.19683 -33.26175 -32.15259 -31.43281 -30.31820 -30.12706 -28.70496 -27.39136 -26.87000 -23.91443 -23.40593 -23.21085 -22.15791 -21.04101 -20.92818 -19.80319 -18.84637 -17.82613 -17.48863 -16.86593 -16.05750 -15.72014 -15.56380 -15.28650 -14.87279 -14.30539 -13.92669 -13.76822 -13.73956 -13.57967 -13.44750 -13.34009 -13.19001 -12.93582 -12.81669 -12.64105 -12.37017 -12.29001 -11.86785 -11.77148 -11.50164 -11.42199 -11.14813 -10.87474 -10.81750 -10.66711 -10.62029 -10.46932 -10.19666 -9.96677 -9.88765 -9.84104 -9.79848 -9.60456 -8.85833 -8.28555 -8.09489 -8.06952 -6.59785 -5.65062 -3.07683 1.89763 2.85146 2.98524 3.26202 3.28571 3.48548 3.54068 3.57272 4.18184 4.52419 4.60318 4.68082 4.70467 4.83923 4.87382 5.02436 5.09227 5.19128 5.21653 5.24368 5.34227 5.40303 5.43802 5.50536 5.55575 5.57412 5.61760 5.69755 5.71021 5.75887 5.87408 5.91113 6.03403 6.10891 6.12999 6.21382 6.30565 6.31641 6.35158 6.45370 6.53477 6.57849 6.72804 6.75933 6.96539 7.27067 7.51732 7.78316 7.95460 8.01672 8.33139 8.57818 8.80156 9.36013 9.99908 10.47756 11.42984 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.011803 B = 0.003778 C = 0.003404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2371.681217 B = 7410.034017 C = 8222.997618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.194 3.806 3 N -0.481 5.481 4 C 0.008 3.992 5 C -0.019 4.019 6 N -0.558 5.558 7 H 0.417 0.583 8 C -0.034 4.034 9 C -0.091 4.091 10 H 0.093 0.907 11 C 0.537 3.463 12 O -0.511 6.511 13 N -0.630 5.630 14 C 0.091 3.909 15 C -0.110 4.110 16 H 0.085 0.915 17 C -0.116 4.116 18 C 0.147 3.853 19 N -0.584 5.584 20 C -0.255 4.255 21 H 0.062 0.938 22 C 0.013 3.987 23 N -0.902 5.902 24 Si 0.900 3.100 25 H -0.285 1.285 26 H -0.292 1.292 27 H -0.282 1.282 28 C 0.166 3.834 29 C 0.125 3.875 30 H 0.070 0.930 31 C -0.100 4.100 32 C -0.032 4.032 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.079 0.921 38 H 0.074 0.926 39 H 0.076 0.924 40 H 0.059 0.941 41 H 0.052 0.948 42 H 0.055 0.945 43 H 0.019 0.981 44 H 0.252 0.748 45 H 0.030 0.970 46 H 0.107 0.893 47 H 0.083 0.917 48 H 0.074 0.926 49 H 0.074 0.926 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.590 0.878 11.919 21.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.069 4.069 3 N -0.202 5.202 4 C -0.122 4.122 5 C -0.135 4.135 6 N -0.161 5.161 7 H 0.255 0.745 8 C -0.072 4.072 9 C -0.113 4.113 10 H 0.111 0.889 11 C 0.325 3.675 12 O -0.386 6.386 13 N -0.367 5.367 14 C -0.032 4.032 15 C -0.129 4.129 16 H 0.103 0.897 17 C -0.156 4.156 18 C 0.021 3.979 19 N -0.307 5.307 20 C -0.384 4.384 21 H 0.080 0.920 22 C -0.186 4.186 23 N -0.547 5.547 24 Si 0.730 3.270 25 H -0.212 1.212 26 H -0.218 1.218 27 H -0.208 1.208 28 C 0.040 3.960 29 C 0.021 3.979 30 H 0.088 0.912 31 C -0.138 4.138 32 C -0.070 4.070 33 H 0.097 0.903 34 H 0.090 0.910 35 H 0.108 0.892 36 H 0.105 0.895 37 H 0.097 0.903 38 H 0.092 0.908 39 H 0.094 0.906 40 H 0.078 0.922 41 H 0.071 0.929 42 H 0.073 0.927 43 H 0.037 0.963 44 H 0.062 0.938 45 H 0.048 0.952 46 H 0.125 0.875 47 H 0.102 0.898 48 H 0.092 0.908 49 H 0.093 0.907 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -17.275 2.298 11.326 20.784 hybrid contribution -0.028 -0.866 -0.643 1.079 sum -17.303 1.431 10.683 20.385 Atomic orbital electron populations 1.20138 0.84890 1.03842 1.03437 1.23273 0.95376 0.81427 1.06807 1.69921 1.01782 1.28573 1.19891 1.20562 0.92772 0.91226 1.07649 1.20905 0.85486 0.95661 1.11469 1.42769 1.06165 1.09895 1.57249 0.74501 1.20087 0.87753 0.96114 1.03250 1.21233 0.92136 0.96023 1.01868 0.88927 1.19884 0.88185 0.79026 0.80379 1.90790 1.48157 1.64407 1.35202 1.49885 1.21596 1.21448 1.43798 1.23640 0.97381 0.88889 0.93294 1.22807 0.96751 0.95393 0.97952 0.89668 1.21862 0.98755 0.99028 0.95942 1.20731 0.92489 0.89719 0.95006 1.43465 1.59215 1.24374 1.03627 1.19071 1.02767 1.31514 0.85068 0.92029 1.24920 0.94790 1.01234 0.97660 1.69995 1.04079 1.42678 1.37931 0.86337 0.76680 0.80091 0.83894 1.21230 1.21830 1.20756 1.20116 0.91022 0.99512 0.85337 1.22654 0.89958 0.84089 1.01159 0.91198 1.21453 0.97987 0.94110 1.00270 1.19979 0.88647 0.96308 1.02104 0.90296 0.90978 0.89233 0.89513 0.90311 0.90835 0.90557 0.92205 0.92886 0.92663 0.96263 0.93765 0.95246 0.87526 0.89811 0.90759 0.90728 0.90164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.44 10.51 36.01 0.38 -0.06 16 2 C 0.19 2.19 8.16 -154.96 -1.26 0.92 16 3 N -0.48 -6.96 11.25 -6.95 -0.08 -7.04 16 4 C 0.01 0.11 6.98 -82.89 -0.58 -0.47 16 5 C -0.02 -0.25 7.08 -81.85 -0.58 -0.83 16 6 N -0.56 -5.79 6.15 -6.53 -0.04 -5.83 16 7 H 0.42 2.94 8.96 -40.82 -0.37 2.57 16 8 C -0.03 -0.43 5.33 -27.70 -0.15 -0.58 16 9 C -0.09 -1.30 2.35 -91.50 -0.22 -1.51 16 10 H 0.09 1.16 8.12 -51.93 -0.42 0.74 16 11 C 0.54 10.07 7.30 -10.99 -0.08 9.99 16 12 O -0.51 -12.30 14.93 5.55 0.08 -12.22 16 13 N -0.63 -10.73 3.31 -174.23 -0.58 -11.30 16 14 C 0.09 1.12 7.62 -3.05 -0.02 1.09 16 15 C -0.11 -1.58 4.39 -90.11 -0.40 -1.98 16 16 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 17 C -0.12 -1.81 5.66 -26.67 -0.15 -1.97 16 18 C 0.15 2.95 6.47 -3.93 -0.03 2.92 16 19 N -0.58 -14.60 3.02 -175.09 -0.53 -15.13 16 20 C -0.25 -7.19 9.55 -15.06 -0.14 -7.33 16 21 H 0.06 1.72 7.84 -52.48 -0.41 1.31 16 22 C 0.01 0.37 4.97 -17.43 -0.09 0.29 16 23 N -0.90 -27.27 10.91 55.49 0.61 -26.67 16 24 Si 0.90 23.24 29.58 -169.99 -5.03 18.21 16 25 H -0.29 -7.58 7.11 56.52 0.40 -7.17 16 26 H -0.29 -7.52 7.11 56.52 0.40 -7.11 16 27 H -0.28 -7.04 7.11 56.52 0.40 -6.63 16 28 C 0.17 4.06 4.61 -5.61 -0.03 4.03 16 29 C 0.12 2.31 4.21 -69.75 -0.29 2.02 16 30 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 31 C -0.10 -1.46 4.64 -26.47 -0.12 -1.59 16 32 C -0.03 -0.42 6.30 -27.61 -0.17 -0.59 16 33 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.09 1.30 8.11 -51.93 -0.42 0.88 16 37 H 0.08 0.87 5.50 -51.93 -0.29 0.58 16 38 H 0.07 0.77 5.58 -51.92 -0.29 0.49 16 39 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.06 1.01 7.69 -51.93 -0.40 0.61 16 41 H 0.05 0.67 8.14 -51.92 -0.42 0.25 16 42 H 0.05 1.10 7.88 -51.93 -0.41 0.69 16 43 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 45 H 0.03 0.78 7.97 -51.93 -0.41 0.37 16 46 H 0.11 3.08 4.83 -51.93 -0.25 2.83 16 47 H 0.08 1.27 7.76 -51.93 -0.40 0.86 16 48 H 0.07 1.23 8.11 -51.93 -0.42 0.80 16 49 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 50 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 LS Contribution 384.65 15.07 5.80 5.80 Total: -1.00 -36.24 384.65 -11.55 -47.79 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -7.86 Total: 2.03 kcal Atomic # 6 Polarization: 8.29 SS G_CDS: -3.93 Total: 4.36 kcal Atomic # 7 Polarization: -65.36 SS G_CDS: -0.62 Total: -65.97 kcal Atomic # 8 Polarization: -12.30 SS G_CDS: 0.08 Total: -12.22 kcal Atomic # 14 Polarization: 23.24 SS G_CDS: -5.03 Total: 18.21 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -36.24 -11.55 -47.79 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084466220.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.728 kcal (2) G-P(sol) polarization free energy of solvation -36.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.792 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds