Wall clock time and date at job start Wed Apr 1 2020 03:24:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30757 * 125.60966 * 2 1 4 4 C 1.33575 * 109.14381 * 180.02562 * 3 2 1 5 5 C 1.35025 * 107.98202 * 359.94000 * 4 3 2 6 6 N 1.35309 * 125.62015 * 179.97438 * 2 1 3 7 7 H 0.96996 * 126.49827 * 0.04891 * 6 2 1 8 8 C 1.50657 * 124.45954 * 180.18929 * 5 4 3 9 9 C 1.53399 * 108.38114 * 16.39217 * 8 5 4 10 10 H 1.08998 * 109.47627 * 70.35861 * 9 8 5 11 11 C 1.50693 * 109.47696 * 190.36821 * 9 8 5 12 12 O 1.21285 * 120.00072 * 119.98697 * 11 9 8 13 13 N 1.34782 * 120.00221 * 299.99103 * 11 9 8 14 14 C 1.47805 * 135.00976 * 0.02562 * 13 11 9 15 15 C 1.54649 * 85.79332 * 153.80248 * 14 13 11 16 16 H 1.08998 * 114.44338 * 140.42787 * 15 14 13 17 17 C 1.53018 * 110.83720 * 270.23062 * 15 14 13 18 18 C 1.53100 * 109.45006 * 143.88527 * 17 15 14 19 19 N 1.46611 * 108.00525 * 301.02455 * 18 17 15 20 20 C 1.36939 * 119.89256 * 237.34936 * 19 18 17 21 21 H 1.08007 * 119.99630 * 25.08763 * 20 19 18 22 22 C 1.38811 * 120.00333 * 205.09042 * 20 19 18 23 23 N 1.31613 * 119.99936 * 13.88366 * 22 20 19 24 24 Si 1.86805 * 119.99995 * 193.88333 * 22 20 19 25 25 H 1.48505 * 109.46785 * 89.99947 * 24 22 20 26 26 H 1.48495 * 109.46900 * 209.99981 * 24 22 20 27 27 H 1.48500 * 109.47174 * 329.99892 * 24 22 20 28 28 C 1.45677 * 120.21971 * 57.33587 * 19 18 17 29 29 C 1.46897 * 135.08992 * 179.87279 * 13 11 9 30 30 H 1.08998 * 110.84149 * 94.70181 * 29 13 11 31 31 C 1.53125 * 109.44939 * 310.36674 * 9 8 5 32 32 C 1.50866 * 128.03171 * 179.97438 * 4 3 2 33 33 H 1.08997 * 109.47273 * 90.02994 * 1 2 3 34 34 H 1.09006 * 109.46764 * 210.02194 * 1 2 3 35 35 H 1.08996 * 109.47936 * 330.02470 * 1 2 3 36 36 H 1.08997 * 109.67638 * 256.67373 * 8 5 4 37 37 H 1.09001 * 109.68476 * 136.12121 * 8 5 4 38 38 H 1.09007 * 113.82520 * 39.58226 * 14 13 11 39 39 H 1.08999 * 113.92983 * 268.03402 * 14 13 11 40 40 H 1.09004 * 109.47562 * 23.88488 * 17 15 14 41 41 H 1.09008 * 109.47285 * 263.88181 * 17 15 14 42 42 H 1.09001 * 109.74909 * 181.39841 * 18 17 15 43 43 H 1.08998 * 109.75213 * 60.65683 * 18 17 15 44 44 H 0.97000 * 119.99883 * 179.97438 * 23 22 20 45 45 H 1.08993 * 108.72311 * 81.73319 * 28 19 18 46 46 H 1.09003 * 108.71474 * 199.88268 * 28 19 18 47 47 H 1.09002 * 109.45669 * 190.03177 * 31 9 8 48 48 H 1.08998 * 109.45600 * 310.00386 * 31 9 8 49 49 H 1.08996 * 109.67675 * 76.91781 * 32 4 3 50 50 H 1.09001 * 109.70924 * 316.39229 * 32 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2684 1.0631 0.0000 4 6 3.5493 0.6844 -0.0006 5 6 3.5850 -0.6653 0.0004 6 7 2.2951 -1.0999 0.0005 7 1 1.9972 -2.0230 0.0002 8 6 4.8494 -1.4846 0.0043 9 6 6.0137 -0.5754 0.4176 10 1 5.9202 -0.3226 1.4737 11 6 7.3183 -1.2933 0.1864 12 8 8.1414 -0.8262 -0.5722 13 7 7.5706 -2.4544 0.8226 14 6 6.8343 -3.3002 1.7855 15 6 7.6664 -4.4733 1.2172 16 1 8.0038 -5.1909 1.9651 17 6 6.9517 -5.1227 0.0302 18 6 7.9860 -5.5611 -1.0100 19 7 8.7356 -4.3738 -1.4319 20 6 8.7682 -4.0218 -2.7549 21 1 7.9690 -4.3262 -3.4145 22 6 9.8284 -3.2738 -3.2482 23 7 10.9241 -3.1337 -2.5326 24 14 9.6999 -2.4660 -4.9276 25 1 9.1311 -1.1023 -4.7787 26 1 11.0507 -2.3750 -5.5377 27 1 8.8159 -3.2785 -5.8014 28 6 9.4457 -3.5672 -0.4484 29 6 8.6891 -3.4064 0.8455 30 1 9.3632 -3.1928 1.6749 31 6 5.9812 0.7067 -0.4190 32 6 4.7775 1.5606 -0.0013 33 1 -0.3634 -0.0005 -1.0276 34 1 -0.3633 -0.8899 0.5142 35 1 -0.3635 0.8901 0.5134 36 1 5.0314 -1.8834 -0.9937 37 1 4.7533 -2.3046 0.7160 38 1 5.7669 -3.3764 1.5782 39 1 7.0503 -3.0724 2.8293 40 1 6.2665 -4.4038 -0.4190 41 1 6.3916 -5.9922 0.3747 42 1 7.4803 -6.0021 -1.8690 43 1 8.6666 -6.2890 -0.5686 44 1 11.6651 -2.6113 -2.8775 45 1 10.4052 -4.0386 -0.2363 46 1 9.6281 -2.5796 -0.8720 47 1 6.9000 1.2700 -0.2559 48 1 5.8954 0.4494 -1.4746 49 1 4.9419 1.9630 0.9982 50 1 4.6449 2.3788 -0.7091 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084466220.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:54 Heat of formation + Delta-G solvation = 52.352566 kcal Electronic energy + Delta-G solvation = -31939.316956 eV Core-core repulsion = 27967.770494 eV Total energy + Delta-G solvation = -3971.546462 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.33224 -41.84437 -39.61358 -37.16578 -37.01055 -34.24483 -33.94015 -32.24383 -31.91808 -31.43855 -30.05523 -28.70229 -28.14995 -25.70054 -24.81126 -24.23562 -23.40189 -22.58295 -21.79278 -21.06295 -19.96502 -19.45542 -18.67711 -18.16937 -17.53032 -17.26317 -16.85205 -16.49900 -16.23030 -15.93191 -15.46569 -15.07133 -14.89034 -14.86720 -14.71619 -14.54497 -14.38673 -14.18830 -13.97442 -13.71980 -13.58614 -13.33331 -13.24705 -13.14714 -12.81633 -12.70963 -12.68319 -12.55993 -12.36020 -12.19882 -11.99000 -11.97997 -11.94908 -11.69175 -11.44926 -11.18616 -10.88461 -10.81133 -10.64394 -10.22344 -9.45932 -9.02175 -8.66662 -7.84754 -5.28249 0.99654 1.34226 1.42216 1.44938 1.74994 1.96718 2.04834 2.18337 2.47753 3.29069 3.31381 3.46680 3.50751 3.67489 3.72515 3.74799 3.97654 4.04112 4.08900 4.16072 4.22257 4.32976 4.34788 4.48198 4.51819 4.55566 4.63323 4.65851 4.72102 4.75777 4.77177 4.79941 4.83712 4.91156 4.98740 5.02800 5.09033 5.11188 5.15397 5.17806 5.24341 5.30167 5.34556 5.46365 5.57391 5.73462 5.75880 5.87062 6.40743 6.54763 6.99311 7.11379 7.20114 7.39106 7.97509 8.36069 9.19368 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.011803 B = 0.003778 C = 0.003404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2371.681217 B = 7410.034017 C = 8222.997618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.202 3.798 3 N -0.522 5.522 4 C -0.017 4.017 5 C -0.025 4.025 6 N -0.545 5.545 7 H 0.435 0.565 8 C -0.020 4.020 9 C -0.078 4.078 10 H 0.121 0.879 11 C 0.527 3.473 12 O -0.582 6.582 13 N -0.634 5.634 14 C 0.107 3.893 15 C -0.100 4.100 16 H 0.123 0.877 17 C -0.105 4.105 18 C 0.138 3.862 19 N -0.601 5.601 20 C -0.254 4.254 21 H 0.061 0.939 22 C -0.044 4.044 23 N -0.932 5.932 24 Si 0.951 3.049 25 H -0.302 1.302 26 H -0.291 1.291 27 H -0.263 1.263 28 C 0.180 3.820 29 C 0.109 3.891 30 H 0.085 0.915 31 C -0.094 4.094 32 C -0.023 4.023 33 H 0.089 0.911 34 H 0.102 0.898 35 H 0.091 0.909 36 H 0.060 0.940 37 H 0.108 0.892 38 H 0.102 0.898 39 H 0.115 0.885 40 H 0.047 0.953 41 H 0.100 0.900 42 H 0.051 0.949 43 H 0.025 0.975 44 H 0.243 0.757 45 H -0.009 1.009 46 H 0.054 0.946 47 H 0.069 0.931 48 H 0.043 0.957 49 H 0.090 0.910 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.674 -1.044 14.733 26.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.062 4.062 3 N -0.243 5.243 4 C -0.146 4.146 5 C -0.142 4.142 6 N -0.150 5.150 7 H 0.276 0.724 8 C -0.058 4.058 9 C -0.099 4.099 10 H 0.139 0.861 11 C 0.317 3.683 12 O -0.461 6.461 13 N -0.369 5.369 14 C -0.013 4.013 15 C -0.118 4.118 16 H 0.141 0.859 17 C -0.144 4.144 18 C 0.013 3.987 19 N -0.324 5.324 20 C -0.384 4.384 21 H 0.079 0.921 22 C -0.240 4.240 23 N -0.579 5.579 24 Si 0.781 3.219 25 H -0.230 1.230 26 H -0.217 1.217 27 H -0.187 1.187 28 C 0.054 3.946 29 C 0.005 3.995 30 H 0.102 0.898 31 C -0.133 4.133 32 C -0.062 4.062 33 H 0.108 0.892 34 H 0.121 0.879 35 H 0.110 0.890 36 H 0.078 0.922 37 H 0.126 0.874 38 H 0.120 0.880 39 H 0.133 0.867 40 H 0.066 0.934 41 H 0.118 0.882 42 H 0.069 0.931 43 H 0.043 0.957 44 H 0.052 0.948 45 H 0.009 0.991 46 H 0.073 0.927 47 H 0.088 0.912 48 H 0.062 0.938 49 H 0.108 0.892 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -21.425 0.286 14.182 25.695 hybrid contribution 1.209 -0.336 -1.530 1.979 sum -20.215 -0.049 12.653 23.849 Atomic orbital electron populations 1.20345 0.81746 1.05478 1.04603 1.24088 0.96961 0.80877 1.04229 1.69907 1.02100 1.30399 1.21894 1.20732 0.93089 0.92079 1.08734 1.20744 0.86334 0.95134 1.12004 1.42705 1.05052 1.10818 1.56427 0.72420 1.19910 0.87082 0.96366 1.02459 1.21154 0.90305 0.95262 1.03209 0.86067 1.20685 0.88900 0.79278 0.79420 1.90766 1.50601 1.66427 1.38353 1.50043 1.21867 1.20768 1.44249 1.23903 0.98230 0.85311 0.93900 1.22812 0.94974 0.95811 0.98252 0.85881 1.21745 0.97266 1.00594 0.94797 1.20995 0.93166 0.88073 0.96503 1.43703 1.59624 1.26370 1.02742 1.19380 1.01950 1.30324 0.86795 0.92093 1.25587 0.94984 1.02672 1.00711 1.70166 1.04616 1.43836 1.39240 0.85503 0.76751 0.78476 0.81211 1.22993 1.21699 1.18725 1.19689 0.90908 0.96251 0.87777 1.22581 0.91435 0.87518 0.97975 0.89755 1.21334 0.98321 0.94908 0.98722 1.19872 0.87764 0.95773 1.02752 0.89243 0.87933 0.89017 0.92188 0.87388 0.88009 0.86721 0.93401 0.88175 0.93068 0.95716 0.94771 0.99145 0.92733 0.91191 0.93806 0.89179 0.90547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.63 10.51 71.24 0.75 0.12 16 2 C 0.20 3.99 8.16 137.97 1.13 5.12 16 3 N -0.52 -14.29 11.25 -175.89 -1.98 -16.27 16 4 C -0.02 -0.47 6.98 41.61 0.29 -0.18 16 5 C -0.03 -0.60 7.08 41.14 0.29 -0.30 16 6 N -0.55 -9.56 6.15 -174.57 -1.07 -10.63 16 7 H 0.43 4.31 8.96 -92.71 -0.83 3.48 16 8 C -0.02 -0.47 5.33 29.97 0.16 -0.31 16 9 C -0.08 -2.16 2.35 -11.37 -0.03 -2.18 16 10 H 0.12 2.70 8.12 -2.39 -0.02 2.68 16 11 C 0.53 20.02 7.30 87.65 0.64 20.66 16 12 O -0.58 -30.01 14.93 -3.05 -0.05 -30.05 16 13 N -0.63 -20.54 3.31 -823.52 -2.72 -23.26 16 14 C 0.11 2.03 7.62 86.31 0.66 2.69 16 15 C -0.10 -2.42 4.39 -10.41 -0.05 -2.46 16 16 H 0.12 2.20 8.14 -2.39 -0.02 2.18 16 17 C -0.11 -2.85 5.66 30.63 0.17 -2.68 16 18 C 0.14 5.33 6.47 86.39 0.56 5.89 16 19 N -0.60 -30.80 3.02 -707.87 -2.14 -32.94 16 20 C -0.25 -14.86 9.55 84.03 0.80 -14.05 16 21 H 0.06 3.49 7.84 -2.91 -0.02 3.47 16 22 C -0.04 -2.70 4.97 84.86 0.42 -2.28 16 23 N -0.93 -59.99 10.91 21.65 0.24 -59.75 16 24 Si 0.95 50.11 29.58 68.60 2.03 52.14 16 25 H -0.30 -16.57 7.11 99.48 0.71 -15.86 16 26 H -0.29 -15.09 7.11 99.48 0.71 -14.39 16 27 H -0.26 -12.85 7.11 99.48 0.71 -12.14 16 28 C 0.18 9.21 4.61 85.80 0.40 9.60 16 29 C 0.11 3.94 4.21 43.60 0.18 4.13 16 30 H 0.08 2.78 8.14 -2.39 -0.02 2.76 16 31 C -0.09 -2.89 4.64 30.76 0.14 -2.75 16 32 C -0.02 -0.61 6.30 30.03 0.19 -0.42 16 33 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.10 0.41 8.14 -2.38 -0.02 0.40 16 35 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.06 1.77 8.11 -2.39 -0.02 1.75 16 37 H 0.11 1.86 5.50 -2.39 -0.01 1.85 16 38 H 0.10 1.43 5.58 -2.38 -0.01 1.41 16 39 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.05 1.43 7.69 -2.39 -0.02 1.41 16 41 H 0.10 1.88 8.14 -2.38 -0.02 1.86 16 42 H 0.05 1.98 7.88 -2.39 -0.02 1.96 16 43 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 44 H 0.24 15.41 8.31 -92.71 -0.77 14.64 16 45 H -0.01 -0.52 7.97 -2.39 -0.02 -0.54 16 46 H 0.05 3.38 4.83 -2.39 -0.01 3.37 16 47 H 0.07 2.29 7.76 -2.39 -0.02 2.27 16 48 H 0.04 1.57 8.11 -2.39 -0.02 1.55 16 49 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 50 H 0.08 2.00 8.14 -2.39 -0.02 1.99 16 Total: -1.00 -89.22 384.65 1.15 -88.08 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: 0.13 Total: 12.12 kcal Atomic # 6 Polarization: 13.88 SS G_CDS: 6.71 Total: 20.58 kcal Atomic # 7 Polarization: -135.18 SS G_CDS: -7.68 Total: -142.86 kcal Atomic # 8 Polarization: -30.01 SS G_CDS: -0.05 Total: -30.05 kcal Atomic # 14 Polarization: 50.11 SS G_CDS: 2.03 Total: 52.14 kcal Total: -89.22 1.15 -88.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084466220.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.430 kcal (2) G-P(sol) polarization free energy of solvation -89.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds