Wall clock time and date at job start Wed Apr 1 2020 03:24:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.30755 * 125.61768 * 2 1 4 4 C 1.33583 * 109.15063 * 180.02562 * 3 2 1 5 5 C 1.35032 * 107.97468 * 0.05626 * 4 3 2 6 6 N 1.35319 * 125.61786 * 180.02562 * 2 1 3 7 7 H 0.96991 * 126.49467 * 359.93854 * 6 2 1 8 8 C 1.50647 * 124.44785 * 179.83469 * 5 4 3 9 9 C 1.53394 * 108.38810 * 343.59974 * 8 5 4 10 10 H 1.09002 * 109.48172 * 289.64595 * 9 8 5 11 11 C 1.50708 * 109.47662 * 169.63443 * 9 8 5 12 12 O 1.21275 * 119.99785 * 240.03025 * 11 9 8 13 13 N 1.34772 * 119.99829 * 60.02685 * 11 9 8 14 14 C 1.47773 * 135.01638 * 359.95777 * 13 11 9 15 15 C 1.54645 * 85.79218 * 153.82534 * 14 13 11 16 16 H 1.09003 * 115.02121 * 139.94912 * 15 14 13 17 17 C 1.53022 * 110.84041 * 270.26258 * 15 14 13 18 18 C 1.53104 * 109.45007 * 143.89443 * 17 15 14 19 19 N 1.46618 * 108.00707 * 301.02130 * 18 17 15 20 20 C 1.36937 * 119.88574 * 237.32992 * 19 18 17 21 21 H 1.08001 * 120.00279 * 25.07558 * 20 19 18 22 22 C 1.38814 * 119.99897 * 205.06527 * 20 19 18 23 23 N 1.31620 * 119.99794 * 13.89347 * 22 20 19 24 24 Si 1.86793 * 120.00300 * 193.88791 * 22 20 19 25 25 H 1.48498 * 109.47329 * 94.97200 * 24 22 20 26 26 H 1.48503 * 109.47405 * 214.97324 * 24 22 20 27 27 H 1.48503 * 109.47062 * 334.97505 * 24 22 20 28 28 C 1.45672 * 120.22026 * 57.30463 * 19 18 17 29 29 C 1.46817 * 135.01186 * 179.97438 * 13 11 9 30 30 H 1.09007 * 110.91097 * 94.54521 * 29 13 11 31 31 C 1.53118 * 109.44389 * 49.64666 * 9 8 5 32 32 C 1.50859 * 128.03340 * 180.02562 * 4 3 2 33 33 H 1.09001 * 109.46979 * 89.97743 * 1 2 3 34 34 H 1.08999 * 109.47512 * 209.97452 * 1 2 3 35 35 H 1.08996 * 109.47298 * 329.97477 * 1 2 3 36 36 H 1.09000 * 109.68049 * 223.87299 * 8 5 4 37 37 H 1.09001 * 109.67809 * 103.32834 * 8 5 4 38 38 H 1.09002 * 113.78898 * 39.60881 * 14 13 11 39 39 H 1.08998 * 113.96009 * 268.05861 * 14 13 11 40 40 H 1.09005 * 109.46744 * 23.90291 * 17 15 14 41 41 H 1.08992 * 109.47390 * 263.89476 * 17 15 14 42 42 H 1.09000 * 109.75258 * 60.64734 * 18 17 15 43 43 H 1.08999 * 109.74908 * 181.39301 * 18 17 15 44 44 H 0.97000 * 120.00204 * 179.97438 * 23 22 20 45 45 H 1.09002 * 108.71324 * 81.77130 * 28 19 18 46 46 H 1.09005 * 108.71610 * 199.91010 * 28 19 18 47 47 H 1.08994 * 109.46331 * 49.99913 * 31 9 8 48 48 H 1.09001 * 109.46140 * 169.96695 * 31 9 8 49 49 H 1.08997 * 109.68000 * 43.59631 * 32 4 3 50 50 H 1.08999 * 109.67608 * 283.05629 * 32 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2684 1.0629 0.0000 4 6 3.5494 0.6843 -0.0006 5 6 3.5850 -0.6656 -0.0022 6 7 2.2950 -1.1000 -0.0005 7 1 1.9971 -2.0231 -0.0001 8 6 4.8492 -1.4847 -0.0069 9 6 6.0134 -0.5755 -0.4203 10 1 5.9196 -0.3222 -1.4763 11 6 7.3182 -1.2936 -0.1899 12 8 8.1414 -0.8271 0.5688 13 7 7.5702 -2.4543 -0.8268 14 6 6.8337 -3.2994 -1.7897 15 6 8.2265 -3.7848 -2.2547 16 1 8.2932 -4.8500 -2.4762 17 6 8.7662 -2.8954 -3.3769 18 6 10.2820 -2.7442 -3.2232 19 7 10.5475 -2.1525 -1.9083 20 6 11.2500 -0.9806 -1.8167 21 1 11.2614 -0.2914 -2.6482 22 6 11.9474 -0.6785 -0.6551 23 7 12.1652 -1.6146 0.2441 24 14 12.5770 1.0566 -0.3682 25 1 11.5926 1.8118 0.4477 26 1 13.8755 0.9997 0.3501 27 1 12.7634 1.7379 -1.6746 28 6 10.0659 -2.8066 -0.6991 29 6 8.6901 -3.4033 -0.8515 30 1 8.5288 -4.2141 -0.1409 31 6 5.9814 0.7061 0.4170 32 6 4.7776 1.5603 -0.0003 33 1 -0.3633 0.0004 -1.0277 34 1 -0.3634 -0.8902 0.5134 35 1 -0.3634 0.8897 0.5142 36 1 4.7529 -2.3045 -0.7188 37 1 5.0316 -1.8840 0.9909 38 1 6.2898 -2.7330 -2.5456 39 1 6.2293 -4.0776 -1.3237 40 1 8.2955 -1.9138 -3.3207 41 1 8.5423 -3.3511 -4.3413 42 1 10.7584 -3.7224 -3.2900 43 1 10.6683 -2.0913 -4.0059 44 1 12.6528 -1.4036 1.0556 45 1 10.7633 -3.5997 -0.4291 46 1 10.0404 -2.0746 0.1082 47 1 5.8961 0.4483 1.4725 48 1 6.9002 1.2695 0.2539 49 1 4.6450 2.3781 0.7081 50 1 4.9415 1.9629 -0.9998 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084466221.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:59 Heat of formation + Delta-G solvation = 75.211749 kcal Electronic energy + Delta-G solvation = -31621.176400 eV Core-core repulsion = 27650.621187 eV Total energy + Delta-G solvation = -3970.555213 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.46912 -40.47590 -38.24977 -35.93007 -35.18002 -33.32119 -32.13457 -31.47676 -30.34649 -30.07694 -28.72878 -27.41102 -26.86106 -23.90539 -23.47715 -23.16932 -22.14960 -21.02877 -20.98718 -19.80029 -18.91475 -17.85245 -17.47196 -16.82912 -16.06437 -15.74045 -15.60951 -15.30870 -14.85307 -14.23035 -13.98170 -13.83918 -13.71345 -13.61800 -13.41326 -13.34214 -13.21174 -12.99626 -12.77862 -12.67436 -12.52296 -12.19426 -11.93418 -11.77468 -11.52815 -11.37627 -11.09502 -10.96592 -10.82949 -10.65257 -10.61486 -10.44320 -10.16480 -9.98752 -9.93062 -9.84940 -9.79050 -9.59229 -8.84850 -8.26937 -8.14716 -8.08089 -6.57757 -5.63131 -3.05556 1.82857 2.79269 2.93921 3.25968 3.28228 3.50443 3.56279 3.58856 4.13364 4.47851 4.62034 4.63857 4.73369 4.77561 4.82932 5.02300 5.05757 5.16895 5.18482 5.24207 5.35688 5.38857 5.46089 5.47898 5.51052 5.53915 5.59397 5.62481 5.70679 5.74463 5.85640 5.90576 5.99658 6.10504 6.13740 6.22642 6.31772 6.33478 6.38994 6.40977 6.54891 6.60156 6.68864 6.79217 7.00223 7.20683 7.52949 7.80210 7.96690 7.97128 8.33364 8.59757 8.80387 9.38007 10.01948 10.49833 11.44975 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.014491 B = 0.003367 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1931.809099 B = 8313.976227 C = 9565.090337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.195 3.805 3 N -0.481 5.481 4 C 0.012 3.988 5 C -0.024 4.024 6 N -0.558 5.558 7 H 0.417 0.583 8 C -0.029 4.029 9 C -0.092 4.092 10 H 0.096 0.904 11 C 0.538 3.462 12 O -0.512 6.512 13 N -0.630 5.630 14 C 0.094 3.906 15 C -0.110 4.110 16 H 0.085 0.915 17 C -0.117 4.117 18 C 0.147 3.853 19 N -0.585 5.585 20 C -0.253 4.253 21 H 0.063 0.937 22 C 0.011 3.989 23 N -0.904 5.904 24 Si 0.901 3.099 25 H -0.286 1.286 26 H -0.293 1.293 27 H -0.281 1.281 28 C 0.166 3.834 29 C 0.124 3.876 30 H 0.070 0.930 31 C -0.099 4.099 32 C -0.034 4.034 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.089 0.911 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.060 0.940 41 H 0.053 0.947 42 H 0.019 0.981 43 H 0.056 0.944 44 H 0.252 0.748 45 H 0.030 0.970 46 H 0.107 0.893 47 H 0.070 0.930 48 H 0.087 0.913 49 H 0.080 0.920 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.386 -4.834 -3.213 23.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.068 4.068 3 N -0.201 5.201 4 C -0.118 4.118 5 C -0.140 4.140 6 N -0.162 5.162 7 H 0.254 0.746 8 C -0.068 4.068 9 C -0.114 4.114 10 H 0.114 0.886 11 C 0.326 3.674 12 O -0.386 6.386 13 N -0.367 5.367 14 C -0.029 4.029 15 C -0.129 4.129 16 H 0.103 0.897 17 C -0.156 4.156 18 C 0.020 3.980 19 N -0.307 5.307 20 C -0.382 4.382 21 H 0.081 0.919 22 C -0.188 4.188 23 N -0.548 5.548 24 Si 0.731 3.269 25 H -0.213 1.213 26 H -0.219 1.219 27 H -0.206 1.206 28 C 0.040 3.960 29 C 0.020 3.980 30 H 0.088 0.912 31 C -0.138 4.138 32 C -0.072 4.072 33 H 0.097 0.903 34 H 0.090 0.910 35 H 0.108 0.892 36 H 0.095 0.905 37 H 0.099 0.901 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.079 0.921 41 H 0.072 0.928 42 H 0.037 0.963 43 H 0.074 0.926 44 H 0.062 0.938 45 H 0.047 0.953 46 H 0.124 0.876 47 H 0.089 0.911 48 H 0.106 0.894 49 H 0.099 0.901 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -22.133 -3.488 -2.507 22.546 hybrid contribution 0.175 -0.612 0.223 0.675 sum -21.958 -4.101 -2.283 22.454 Atomic orbital electron populations 1.20140 0.84861 1.03917 1.03408 1.23294 0.95393 0.81414 1.06683 1.69940 1.01804 1.28555 1.19823 1.20611 0.92784 0.91245 1.07129 1.20857 0.85415 0.95685 1.12001 1.42761 1.06149 1.09841 1.57412 0.74583 1.19992 0.88032 0.96214 1.02538 1.21239 0.91838 0.95961 1.02394 0.88634 1.19855 0.87827 0.79970 0.79765 1.90788 1.47366 1.64816 1.35603 1.49855 1.20437 1.20901 1.45481 1.23517 0.95988 0.92587 0.90827 1.22851 0.94244 0.99469 0.96332 0.89715 1.21859 1.00086 0.98526 0.95139 1.20742 0.91416 0.96382 0.89423 1.43473 1.62168 1.25568 0.99515 1.19101 1.23297 0.94654 1.01173 0.91938 1.24933 0.97935 0.97461 0.98447 1.70004 1.43445 1.30853 1.10522 0.86297 0.77807 0.84956 0.77820 1.21265 1.21933 1.20641 1.20109 0.86486 0.97929 0.91512 1.22702 0.91757 0.89154 0.94359 0.91241 1.21447 0.98324 0.94297 0.99691 1.20005 0.88508 0.96306 1.02399 0.90290 0.90982 0.89185 0.90491 0.90142 0.90827 0.90757 0.92085 0.92823 0.96279 0.92586 0.93824 0.95263 0.87555 0.91115 0.89441 0.90122 0.90486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.40 10.51 36.00 0.38 -0.02 16 2 C 0.19 2.06 8.16 -154.95 -1.26 0.80 16 3 N -0.48 -6.73 11.25 -6.95 -0.08 -6.81 16 4 C 0.01 0.17 6.98 -82.89 -0.58 -0.41 16 5 C -0.02 -0.28 7.08 -81.86 -0.58 -0.86 16 6 N -0.56 -5.24 6.15 -6.53 -0.04 -5.28 16 7 H 0.42 2.42 8.96 -40.82 -0.37 2.05 16 8 C -0.03 -0.33 5.32 -27.71 -0.15 -0.48 16 9 C -0.09 -1.32 2.35 -91.50 -0.22 -1.53 16 10 H 0.10 1.31 8.12 -51.93 -0.42 0.89 16 11 C 0.54 10.07 7.30 -10.98 -0.08 9.99 16 12 O -0.51 -12.31 14.93 5.56 0.08 -12.22 16 13 N -0.63 -10.71 3.30 -174.21 -0.57 -11.29 16 14 C 0.09 1.15 6.39 -3.04 -0.02 1.13 16 15 C -0.11 -1.60 4.39 -89.99 -0.40 -2.00 16 16 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 17 C -0.12 -1.88 5.66 -26.67 -0.15 -2.03 16 18 C 0.15 3.00 6.47 -3.92 -0.03 2.97 16 19 N -0.58 -14.80 3.02 -175.09 -0.53 -15.33 16 20 C -0.25 -7.19 9.55 -15.06 -0.14 -7.34 16 21 H 0.06 1.76 7.84 -52.49 -0.41 1.35 16 22 C 0.01 0.32 4.96 -17.43 -0.09 0.23 16 23 N -0.90 -27.43 10.91 55.49 0.61 -26.82 16 24 Si 0.90 23.30 29.58 -169.99 -5.03 18.27 16 25 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16 26 H -0.29 -7.55 7.11 56.52 0.40 -7.14 16 27 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 28 C 0.17 4.07 4.60 -5.62 -0.03 4.05 16 29 C 0.12 2.30 4.22 -69.65 -0.29 2.01 16 30 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 31 C -0.10 -1.45 4.64 -26.47 -0.12 -1.57 16 32 C -0.03 -0.45 6.30 -27.60 -0.17 -0.62 16 33 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 35 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.08 0.74 6.70 -51.93 -0.35 0.39 16 37 H 0.08 0.95 8.11 -51.93 -0.42 0.53 16 38 H 0.07 0.80 7.97 -51.93 -0.41 0.39 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.06 1.08 7.69 -51.93 -0.40 0.68 16 41 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.06 1.13 7.88 -51.93 -0.41 0.72 16 44 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 45 H 0.03 0.78 7.97 -51.93 -0.41 0.37 16 46 H 0.11 3.08 4.83 -51.93 -0.25 2.83 16 47 H 0.07 1.07 8.11 -51.93 -0.42 0.64 16 48 H 0.09 1.43 7.76 -51.93 -0.40 1.03 16 49 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 50 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 LS Contribution 387.02 15.07 5.83 5.83 Total: -1.00 -36.53 387.02 -11.70 -48.23 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -8.04 Total: 1.11 kcal Atomic # 6 Polarization: 8.24 SS G_CDS: -3.92 Total: 4.31 kcal Atomic # 7 Polarization: -64.91 SS G_CDS: -0.62 Total: -65.52 kcal Atomic # 8 Polarization: -12.31 SS G_CDS: 0.08 Total: -12.22 kcal Atomic # 14 Polarization: 23.30 SS G_CDS: -5.03 Total: 18.27 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -36.53 -11.70 -48.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084466221.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.438 kcal (2) G-P(sol) polarization free energy of solvation -36.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.226 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds