Wall clock time and date at job start Wed Apr 1 2020 03:24:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.30755 * 125.61768 * 2 1 4 4 C 1.33583 * 109.15063 * 180.02562 * 3 2 1 5 5 C 1.35032 * 107.97468 * 0.05626 * 4 3 2 6 6 N 1.35319 * 125.61786 * 180.02562 * 2 1 3 7 7 H 0.96991 * 126.49467 * 359.93854 * 6 2 1 8 8 C 1.50647 * 124.44785 * 179.83469 * 5 4 3 9 9 C 1.53394 * 108.38810 * 343.59974 * 8 5 4 10 10 H 1.09002 * 109.48172 * 289.64595 * 9 8 5 11 11 C 1.50708 * 109.47662 * 169.63443 * 9 8 5 12 12 O 1.21275 * 119.99785 * 240.03025 * 11 9 8 13 13 N 1.34772 * 119.99829 * 60.02685 * 11 9 8 14 14 C 1.47773 * 135.01638 * 359.95777 * 13 11 9 15 15 C 1.54645 * 85.79218 * 153.82534 * 14 13 11 16 16 H 1.09003 * 115.02121 * 139.94912 * 15 14 13 17 17 C 1.53022 * 110.84041 * 270.26258 * 15 14 13 18 18 C 1.53104 * 109.45007 * 143.89443 * 17 15 14 19 19 N 1.46618 * 108.00707 * 301.02130 * 18 17 15 20 20 C 1.36937 * 119.88574 * 237.32992 * 19 18 17 21 21 H 1.08001 * 120.00279 * 25.07558 * 20 19 18 22 22 C 1.38814 * 119.99897 * 205.06527 * 20 19 18 23 23 N 1.31620 * 119.99794 * 13.89347 * 22 20 19 24 24 Si 1.86793 * 120.00300 * 193.88791 * 22 20 19 25 25 H 1.48498 * 109.47329 * 94.97200 * 24 22 20 26 26 H 1.48503 * 109.47405 * 214.97324 * 24 22 20 27 27 H 1.48503 * 109.47062 * 334.97505 * 24 22 20 28 28 C 1.45672 * 120.22026 * 57.30463 * 19 18 17 29 29 C 1.46817 * 135.01186 * 179.97438 * 13 11 9 30 30 H 1.09007 * 110.91097 * 94.54521 * 29 13 11 31 31 C 1.53118 * 109.44389 * 49.64666 * 9 8 5 32 32 C 1.50859 * 128.03340 * 180.02562 * 4 3 2 33 33 H 1.09001 * 109.46979 * 89.97743 * 1 2 3 34 34 H 1.08999 * 109.47512 * 209.97452 * 1 2 3 35 35 H 1.08996 * 109.47298 * 329.97477 * 1 2 3 36 36 H 1.09000 * 109.68049 * 223.87299 * 8 5 4 37 37 H 1.09001 * 109.67809 * 103.32834 * 8 5 4 38 38 H 1.09002 * 113.78898 * 39.60881 * 14 13 11 39 39 H 1.08998 * 113.96009 * 268.05861 * 14 13 11 40 40 H 1.09005 * 109.46744 * 23.90291 * 17 15 14 41 41 H 1.08992 * 109.47390 * 263.89476 * 17 15 14 42 42 H 1.09000 * 109.75258 * 60.64734 * 18 17 15 43 43 H 1.08999 * 109.74908 * 181.39301 * 18 17 15 44 44 H 0.97000 * 120.00204 * 179.97438 * 23 22 20 45 45 H 1.09002 * 108.71324 * 81.77130 * 28 19 18 46 46 H 1.09005 * 108.71610 * 199.91010 * 28 19 18 47 47 H 1.08994 * 109.46331 * 49.99913 * 31 9 8 48 48 H 1.09001 * 109.46140 * 169.96695 * 31 9 8 49 49 H 1.08997 * 109.68000 * 43.59631 * 32 4 3 50 50 H 1.08999 * 109.67608 * 283.05629 * 32 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2684 1.0629 0.0000 4 6 3.5494 0.6843 -0.0006 5 6 3.5850 -0.6656 -0.0022 6 7 2.2950 -1.1000 -0.0005 7 1 1.9971 -2.0231 -0.0001 8 6 4.8492 -1.4847 -0.0069 9 6 6.0134 -0.5755 -0.4203 10 1 5.9196 -0.3222 -1.4763 11 6 7.3182 -1.2936 -0.1899 12 8 8.1414 -0.8271 0.5688 13 7 7.5702 -2.4543 -0.8268 14 6 6.8337 -3.2994 -1.7897 15 6 8.2265 -3.7848 -2.2547 16 1 8.2932 -4.8500 -2.4762 17 6 8.7662 -2.8954 -3.3769 18 6 10.2820 -2.7442 -3.2232 19 7 10.5475 -2.1525 -1.9083 20 6 11.2500 -0.9806 -1.8167 21 1 11.2614 -0.2914 -2.6482 22 6 11.9474 -0.6785 -0.6551 23 7 12.1652 -1.6146 0.2441 24 14 12.5770 1.0566 -0.3682 25 1 11.5926 1.8118 0.4477 26 1 13.8755 0.9997 0.3501 27 1 12.7634 1.7379 -1.6746 28 6 10.0659 -2.8066 -0.6991 29 6 8.6901 -3.4033 -0.8515 30 1 8.5288 -4.2141 -0.1409 31 6 5.9814 0.7061 0.4170 32 6 4.7776 1.5603 -0.0003 33 1 -0.3633 0.0004 -1.0277 34 1 -0.3634 -0.8902 0.5134 35 1 -0.3634 0.8897 0.5142 36 1 4.7529 -2.3045 -0.7188 37 1 5.0316 -1.8840 0.9909 38 1 6.2898 -2.7330 -2.5456 39 1 6.2293 -4.0776 -1.3237 40 1 8.2955 -1.9138 -3.3207 41 1 8.5423 -3.3511 -4.3413 42 1 10.7584 -3.7224 -3.2900 43 1 10.6683 -2.0913 -4.0059 44 1 12.6528 -1.4036 1.0556 45 1 10.7633 -3.5997 -0.4291 46 1 10.0404 -2.0746 0.1082 47 1 5.8961 0.4483 1.4725 48 1 6.9002 1.2695 0.2539 49 1 4.6450 2.3781 0.7081 50 1 4.9415 1.9629 -0.9998 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084466221.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:58 Heat of formation + Delta-G solvation = 50.335642 kcal Electronic energy + Delta-G solvation = -31622.255109 eV Core-core repulsion = 27650.621187 eV Total energy + Delta-G solvation = -3971.633922 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.32677 -41.82114 -39.62412 -37.15506 -37.00469 -34.25500 -33.92655 -32.24087 -31.91965 -31.40983 -30.04873 -28.68547 -28.15171 -25.69690 -24.84674 -24.16634 -23.39501 -22.57632 -21.79222 -21.06444 -19.98074 -19.48104 -18.59946 -18.17995 -17.46210 -17.26330 -16.95487 -16.45539 -16.23220 -15.84551 -15.50809 -15.12605 -14.84461 -14.80651 -14.61624 -14.55406 -14.33721 -14.26995 -14.00600 -13.74617 -13.49211 -13.40510 -13.26056 -13.15153 -12.75049 -12.71847 -12.68879 -12.54430 -12.33631 -12.19093 -12.03927 -11.98207 -11.93341 -11.69508 -11.46557 -11.17102 -10.88302 -10.81366 -10.64096 -10.21880 -9.45320 -9.02055 -8.66234 -7.84030 -5.27702 1.00123 1.35929 1.43552 1.47144 1.76942 1.96693 2.05117 2.18094 2.49041 3.28807 3.31874 3.46814 3.51256 3.68984 3.71471 3.75548 3.96800 4.07708 4.10603 4.15548 4.24202 4.34307 4.45959 4.48431 4.51596 4.55753 4.58642 4.64771 4.72574 4.74594 4.78330 4.79123 4.82388 4.92236 4.98187 5.02984 5.09310 5.11453 5.15627 5.18462 5.23036 5.28260 5.35257 5.46925 5.58214 5.73721 5.75702 5.87122 6.41470 6.56659 6.99990 7.12677 7.20742 7.39829 7.98017 8.36473 9.20088 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.014491 B = 0.003367 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1931.809099 B = 8313.976227 C = 9565.090337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.202 3.798 3 N -0.525 5.525 4 C -0.019 4.019 5 C -0.023 4.023 6 N -0.543 5.543 7 H 0.436 0.564 8 C -0.015 4.015 9 C -0.079 4.079 10 H 0.106 0.894 11 C 0.528 3.472 12 O -0.583 6.583 13 N -0.634 5.634 14 C 0.110 3.890 15 C -0.100 4.100 16 H 0.124 0.876 17 C -0.106 4.106 18 C 0.137 3.863 19 N -0.602 5.602 20 C -0.254 4.254 21 H 0.061 0.939 22 C -0.046 4.046 23 N -0.933 5.933 24 Si 0.954 3.046 25 H -0.301 1.301 26 H -0.291 1.291 27 H -0.263 1.263 28 C 0.179 3.821 29 C 0.109 3.891 30 H 0.088 0.912 31 C -0.093 4.093 32 C -0.026 4.026 33 H 0.094 0.906 34 H 0.101 0.899 35 H 0.087 0.913 36 H 0.109 0.891 37 H 0.077 0.923 38 H 0.099 0.901 39 H 0.120 0.880 40 H 0.043 0.957 41 H 0.098 0.902 42 H 0.026 0.974 43 H 0.050 0.950 44 H 0.243 0.757 45 H -0.009 1.009 46 H 0.054 0.946 47 H 0.057 0.943 48 H 0.057 0.943 49 H 0.077 0.923 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.505 -7.173 -5.693 28.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.062 4.062 3 N -0.246 5.246 4 C -0.148 4.148 5 C -0.140 4.140 6 N -0.148 5.148 7 H 0.278 0.722 8 C -0.054 4.054 9 C -0.101 4.101 10 H 0.124 0.876 11 C 0.318 3.682 12 O -0.462 6.462 13 N -0.369 5.369 14 C -0.011 4.011 15 C -0.119 4.119 16 H 0.142 0.858 17 C -0.144 4.144 18 C 0.012 3.988 19 N -0.326 5.326 20 C -0.384 4.384 21 H 0.079 0.921 22 C -0.242 4.242 23 N -0.579 5.579 24 Si 0.783 3.217 25 H -0.229 1.229 26 H -0.217 1.217 27 H -0.187 1.187 28 C 0.052 3.948 29 C 0.004 3.996 30 H 0.105 0.895 31 C -0.132 4.132 32 C -0.064 4.064 33 H 0.113 0.887 34 H 0.119 0.881 35 H 0.106 0.894 36 H 0.127 0.873 37 H 0.095 0.905 38 H 0.117 0.883 39 H 0.138 0.862 40 H 0.062 0.938 41 H 0.117 0.883 42 H 0.044 0.956 43 H 0.069 0.931 44 H 0.052 0.948 45 H 0.009 0.991 46 H 0.073 0.927 47 H 0.076 0.924 48 H 0.076 0.924 49 H 0.095 0.905 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -26.301 -5.893 -5.068 27.425 hybrid contribution 1.459 0.083 0.947 1.742 sum -24.841 -5.810 -4.121 25.843 Atomic orbital electron populations 1.20339 0.81772 1.05250 1.04804 1.24074 0.96942 0.80902 1.04239 1.69901 1.02173 1.30613 1.21872 1.20662 0.92869 0.92252 1.08993 1.20740 0.86473 0.94980 1.11762 1.42667 1.04902 1.10789 1.56439 0.72239 1.19875 0.86316 0.96042 1.03167 1.21120 0.90717 0.95536 1.02710 0.87552 1.20640 0.88470 0.80296 0.78799 1.90765 1.49817 1.66779 1.38836 1.50007 1.20786 1.20528 1.45532 1.23812 0.94955 0.92422 0.89892 1.22861 0.95134 1.01306 0.92628 0.85836 1.21735 0.95880 0.98669 0.98165 1.20999 0.95085 0.96041 0.86641 1.43722 1.62151 1.25091 1.01607 1.19395 1.22355 0.95900 1.00766 0.92123 1.25621 0.99276 1.00472 0.98796 1.70177 1.44805 1.32282 1.10684 0.85442 0.76770 0.81411 0.78067 1.22874 1.21707 1.18697 1.19704 0.89665 0.95374 0.90023 1.22631 0.88787 0.89750 0.98383 0.89466 1.21315 0.97729 0.94885 0.99259 1.19852 0.88169 0.96022 1.02344 0.88731 0.88079 0.89436 0.87251 0.90505 0.88266 0.86244 0.93769 0.88322 0.95599 0.93140 0.94781 0.99096 0.92719 0.92391 0.92431 0.90480 0.90218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.55 10.51 71.23 0.75 0.20 16 2 C 0.20 3.69 8.16 137.96 1.13 4.82 16 3 N -0.52 -13.98 11.25 -175.89 -1.98 -15.96 16 4 C -0.02 -0.50 6.98 41.60 0.29 -0.21 16 5 C -0.02 -0.48 7.08 41.14 0.29 -0.19 16 6 N -0.54 -8.16 6.15 -174.59 -1.07 -9.24 16 7 H 0.44 2.95 8.96 -92.71 -0.83 2.12 16 8 C -0.02 -0.31 5.32 29.96 0.16 -0.15 16 9 C -0.08 -2.20 2.35 -11.37 -0.03 -2.23 16 10 H 0.11 2.74 8.12 -2.39 -0.02 2.72 16 11 C 0.53 20.00 7.30 87.66 0.64 20.64 16 12 O -0.58 -30.01 14.93 -3.01 -0.04 -30.05 16 13 N -0.63 -20.38 3.30 -823.46 -2.72 -23.10 16 14 C 0.11 2.05 6.39 86.33 0.55 2.60 16 15 C -0.10 -2.47 4.39 -10.33 -0.05 -2.51 16 16 H 0.12 2.22 8.14 -2.39 -0.02 2.20 16 17 C -0.11 -3.01 5.66 30.64 0.17 -2.83 16 18 C 0.14 5.45 6.47 86.39 0.56 6.01 16 19 N -0.60 -31.31 3.02 -707.86 -2.14 -33.44 16 20 C -0.25 -14.99 9.55 84.03 0.80 -14.18 16 21 H 0.06 3.52 7.84 -2.91 -0.02 3.50 16 22 C -0.05 -2.85 4.96 84.86 0.42 -2.43 16 23 N -0.93 -60.24 10.91 21.65 0.24 -60.00 16 24 Si 0.95 50.28 29.58 68.60 2.03 52.30 16 25 H -0.30 -16.45 7.11 99.48 0.71 -15.75 16 26 H -0.29 -15.06 7.11 99.48 0.71 -14.35 16 27 H -0.26 -12.88 7.11 99.48 0.71 -12.18 16 28 C 0.18 9.17 4.60 85.80 0.40 9.57 16 29 C 0.11 3.91 4.22 43.71 0.18 4.09 16 30 H 0.09 2.82 8.14 -2.38 -0.02 2.80 16 31 C -0.09 -2.88 4.64 30.76 0.14 -2.74 16 32 C -0.03 -0.69 6.30 30.03 0.19 -0.50 16 33 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.10 0.30 8.14 -2.39 -0.02 0.28 16 35 H 0.09 0.84 8.14 -2.39 -0.02 0.83 16 36 H 0.11 1.47 6.70 -2.39 -0.02 1.46 16 37 H 0.08 1.64 8.11 -2.39 -0.02 1.62 16 38 H 0.10 1.46 7.97 -2.39 -0.02 1.44 16 39 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.04 1.42 7.69 -2.38 -0.02 1.40 16 41 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 42 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.05 2.01 7.88 -2.39 -0.02 1.99 16 44 H 0.24 15.43 8.31 -92.71 -0.77 14.66 16 45 H -0.01 -0.50 7.97 -2.39 -0.02 -0.52 16 46 H 0.05 3.39 4.83 -2.38 -0.01 3.38 16 47 H 0.06 1.88 8.11 -2.39 -0.02 1.86 16 48 H 0.06 2.08 7.76 -2.39 -0.02 2.06 16 49 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 50 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 Total: -1.00 -90.12 387.02 1.04 -89.08 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: 0.12 Total: 10.44 kcal Atomic # 6 Polarization: 13.36 SS G_CDS: 6.60 Total: 19.96 kcal Atomic # 7 Polarization: -134.07 SS G_CDS: -7.67 Total: -141.74 kcal Atomic # 8 Polarization: -30.01 SS G_CDS: -0.04 Total: -30.05 kcal Atomic # 14 Polarization: 50.28 SS G_CDS: 2.03 Total: 52.30 kcal Total: -90.12 1.04 -89.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084466221.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.421 kcal (2) G-P(sol) polarization free energy of solvation -90.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.085 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds