Wall clock time and date at job start Wed Apr 1 2020 02:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30779 * 125.72912 * 2 1 4 4 C 1.34425 * 109.32585 * 179.97438 * 3 2 1 5 5 C 1.33867 * 107.79487 * 359.97438 * 4 3 2 6 6 N 1.34411 * 125.71681 * 179.97438 * 2 1 3 7 7 C 1.46468 * 128.44617 * 0.13021 * 6 2 1 8 8 C 1.53287 * 108.69599 * 162.71814 * 7 6 2 9 9 H 1.09004 * 109.42562 * 290.66236 * 8 7 6 10 10 C 1.50706 * 109.42738 * 170.81393 * 8 7 6 11 11 O 1.21275 * 120.00504 * 332.90962 * 10 8 7 12 12 N 1.34780 * 119.99564 * 152.90821 * 10 8 7 13 13 C 1.47290 * 136.54518 * 4.33568 * 12 10 8 14 14 C 1.54374 * 87.49852 * 151.46601 * 13 12 10 15 15 H 1.08996 * 114.92128 * 141.75267 * 14 13 12 16 16 C 1.53065 * 112.44915 * 274.15850 * 14 13 12 17 17 C 1.53139 * 109.21609 * 142.78291 * 16 14 13 18 18 N 1.46542 * 108.25302 * 301.58709 * 17 16 14 19 19 C 1.36937 * 119.73894 * 236.40350 * 18 17 16 20 20 H 1.07999 * 119.99977 * 26.31248 * 19 18 17 21 21 C 1.38809 * 119.99651 * 206.31910 * 19 18 17 22 22 N 1.31621 * 120.00247 * 15.71796 * 21 19 18 23 23 Si 1.86796 * 119.99827 * 195.71430 * 21 19 18 24 24 H 1.48499 * 109.47233 * 59.99768 * 23 21 19 25 25 H 1.48501 * 109.47111 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47211 * 299.99614 * 23 21 19 27 27 C 1.44783 * 120.89393 * 55.60176 * 18 17 16 28 28 C 1.46462 * 136.54322 * 184.71386 * 12 10 8 29 29 H 1.08997 * 111.44509 * 96.33624 * 28 12 10 30 30 C 1.53121 * 109.70901 * 50.74528 * 8 7 6 31 31 C 1.50705 * 128.67640 * 180.14678 * 5 4 3 32 32 H 1.09001 * 109.47471 * 270.00572 * 1 2 3 33 33 H 1.09003 * 109.46874 * 29.99347 * 1 2 3 34 34 H 1.08998 * 109.47852 * 149.99711 * 1 2 3 35 35 H 1.07999 * 126.10495 * 180.02562 * 4 3 2 36 36 H 1.09000 * 109.59683 * 282.47609 * 7 6 2 37 37 H 1.08998 * 109.60371 * 42.95005 * 7 6 2 38 38 H 1.08998 * 113.53206 * 266.09187 * 13 12 10 39 39 H 1.09003 * 113.52667 * 36.72909 * 13 12 10 40 40 H 1.09009 * 109.50753 * 262.70212 * 16 14 13 41 41 H 1.09000 * 109.51586 * 22.80469 * 16 14 13 42 42 H 1.09007 * 109.70900 * 61.27216 * 17 16 14 43 43 H 1.08998 * 109.70957 * 181.89579 * 17 16 14 44 44 H 0.96996 * 119.99907 * 180.02562 * 22 21 19 45 45 H 1.08998 * 109.76536 * 199.61908 * 27 18 17 46 46 H 1.09003 * 107.24645 * 81.73748 * 27 18 17 47 47 H 1.09004 * 109.49653 * 170.13711 * 30 8 7 48 48 H 1.08999 * 109.51030 * 50.03121 * 30 8 7 49 49 H 1.08999 * 109.74956 * 283.77974 * 31 5 4 50 50 H 1.08994 * 109.75113 * 44.45739 * 31 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2706 1.0616 0.0000 4 6 3.5602 0.6820 0.0006 5 6 3.5927 -0.6562 0.0015 6 7 2.2916 -1.0913 0.0005 7 6 1.8919 -2.5004 -0.0015 8 6 3.0924 -3.3511 -0.4314 9 1 3.3038 -3.1732 -1.4858 10 6 2.7734 -4.8093 -0.2240 11 8 1.9750 -5.1405 0.6267 12 7 3.3754 -5.7455 -0.9842 13 6 4.4169 -5.7697 -2.0253 14 6 4.7538 -7.2024 -1.5597 15 1 5.0061 -7.8981 -2.3599 16 6 5.7413 -7.2199 -0.3903 17 6 5.3637 -8.3503 0.5714 18 7 3.9909 -8.1227 1.0308 19 6 3.7300 -8.0293 2.3719 20 1 4.5029 -7.7003 3.0507 21 6 2.4723 -8.3577 2.8587 22 7 1.6345 -9.0422 2.1090 23 14 1.9687 -7.8283 4.5778 24 1 2.0148 -6.3471 4.6731 25 1 0.5886 -8.3001 4.8567 26 1 2.9027 -8.4175 5.5707 27 6 2.9048 -7.9773 0.0845 28 6 3.2847 -7.1975 -1.1528 29 1 2.6375 -7.4619 -1.9891 30 6 4.3184 -2.9740 0.4049 31 6 4.7918 -1.5692 0.0054 32 1 -0.3634 0.0001 1.0277 33 1 -0.3633 0.8901 -0.5138 34 1 -0.3635 -0.8899 -0.5138 35 1 4.4171 1.3394 0.0011 36 1 1.5769 -2.7924 1.0003 37 1 1.0704 -2.6465 -0.7028 38 1 4.0198 -5.7239 -3.0394 39 1 5.2209 -5.0540 -1.8532 40 1 6.7503 -7.3853 -0.7683 41 1 5.7010 -6.2655 0.1347 42 1 5.4242 -9.3082 0.0547 43 1 6.0418 -8.3489 1.4247 44 1 0.7554 -9.2713 2.4491 45 1 2.0605 -7.4833 0.5654 46 1 2.5988 -8.9803 -0.2129 47 1 5.1178 -3.6924 0.2231 48 1 4.0544 -2.9826 1.4624 49 1 5.2356 -1.5985 -0.9897 50 1 5.5263 -1.2093 0.7257 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084612621.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:48 Heat of formation + Delta-G solvation = 90.353357 kcal Electronic energy + Delta-G solvation = -31984.339210 eV Core-core repulsion = 28014.440586 eV Total energy + Delta-G solvation = -3969.898624 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.46469 -40.68783 -38.42401 -36.05379 -35.33844 -33.46960 -32.23489 -31.40288 -30.26075 -30.11921 -28.82227 -27.01637 -26.51491 -24.69642 -23.90917 -22.96152 -22.32031 -21.19888 -20.90557 -19.73780 -18.91242 -17.87709 -17.26867 -16.69908 -16.20813 -15.86116 -15.64796 -15.42675 -14.67506 -14.55596 -14.23054 -14.00237 -13.91728 -13.71537 -13.40600 -13.27970 -13.24358 -13.10061 -13.03816 -12.73158 -12.48511 -12.48139 -12.06235 -11.96014 -11.78773 -11.53918 -11.24690 -11.21675 -11.04737 -10.72544 -10.67386 -10.53907 -10.24523 -9.99005 -9.97122 -9.83643 -9.66691 -9.54085 -9.02991 -8.33917 -8.25695 -8.24380 -6.60553 -5.69938 -3.13144 1.97785 2.57064 2.95870 3.06329 3.16288 3.44416 3.50069 3.53748 4.24284 4.31972 4.39926 4.46203 4.54092 4.59341 4.67178 4.85712 5.02326 5.05940 5.08224 5.12873 5.29024 5.31034 5.35652 5.39081 5.41351 5.45174 5.52950 5.55886 5.60341 5.63842 5.67655 5.71692 5.80247 5.87045 5.97172 6.02410 6.06478 6.22442 6.32525 6.34871 6.43418 6.52215 6.70578 6.72568 6.93932 7.14275 7.43433 7.69894 7.89103 8.04042 8.17967 8.53601 8.55883 9.33059 9.96909 10.43328 11.37929 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.011727 B = 0.003881 C = 0.003317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2387.163690 B = 7212.055694 C = 8438.122595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.207 3.793 3 N -0.497 5.497 4 C -0.025 4.025 5 C -0.026 4.026 6 N -0.448 5.448 7 C 0.119 3.881 8 C -0.110 4.110 9 H 0.093 0.907 10 C 0.547 3.453 11 O -0.510 6.510 12 N -0.630 5.630 13 C 0.094 3.906 14 C -0.112 4.112 15 H 0.091 0.909 16 C -0.114 4.114 17 C 0.149 3.851 18 N -0.583 5.583 19 C -0.256 4.256 20 H 0.060 0.940 21 C 0.015 3.985 22 N -0.902 5.902 23 Si 0.899 3.101 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.285 1.285 27 C 0.170 3.830 28 C 0.117 3.883 29 H 0.073 0.927 30 C -0.112 4.112 31 C -0.041 4.041 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.072 0.928 35 H 0.168 0.832 36 H 0.104 0.896 37 H 0.092 0.908 38 H 0.078 0.922 39 H 0.071 0.929 40 H 0.055 0.945 41 H 0.059 0.941 42 H 0.020 0.980 43 H 0.056 0.944 44 H 0.252 0.748 45 H 0.098 0.902 46 H 0.028 0.972 47 H 0.083 0.917 48 H 0.078 0.922 49 H 0.082 0.918 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.576 12.422 -11.409 17.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.055 4.055 3 N -0.216 5.216 4 C -0.173 4.173 5 C -0.141 4.141 6 N -0.131 5.131 7 C -0.004 4.004 8 C -0.132 4.132 9 H 0.111 0.889 10 C 0.334 3.666 11 O -0.384 6.384 12 N -0.366 5.366 13 C -0.029 4.029 14 C -0.131 4.131 15 H 0.109 0.891 16 C -0.154 4.154 17 C 0.023 3.977 18 N -0.305 5.305 19 C -0.386 4.386 20 H 0.078 0.922 21 C -0.184 4.184 22 N -0.546 5.546 23 Si 0.730 3.270 24 H -0.211 1.211 25 H -0.217 1.217 26 H -0.211 1.211 27 C 0.043 3.957 28 C 0.014 3.986 29 H 0.091 0.909 30 C -0.150 4.150 31 C -0.080 4.080 32 H 0.099 0.901 33 H 0.107 0.893 34 H 0.091 0.909 35 H 0.185 0.815 36 H 0.122 0.878 37 H 0.111 0.889 38 H 0.096 0.904 39 H 0.090 0.910 40 H 0.074 0.926 41 H 0.078 0.922 42 H 0.038 0.962 43 H 0.075 0.925 44 H 0.062 0.938 45 H 0.116 0.884 46 H 0.046 0.954 47 H 0.101 0.899 48 H 0.097 0.903 49 H 0.100 0.900 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 4.462 12.998 -10.747 17.445 hybrid contribution -0.061 -0.474 0.658 0.813 sum 4.401 12.524 -10.089 16.673 Atomic orbital electron populations 1.20177 0.85034 1.03822 1.03634 1.23086 0.95609 0.81137 1.05662 1.70428 1.01981 1.28026 1.21183 1.21776 0.94800 0.91874 1.08829 1.21148 0.85691 0.95406 1.11827 1.45275 1.06425 1.07200 1.54197 1.21798 0.97031 0.76562 1.04966 1.21463 0.96414 0.93134 1.02177 0.88860 1.19382 0.80699 0.85280 0.81211 1.90823 1.34235 1.81381 1.31930 1.49434 1.40281 1.08995 1.37892 1.23393 0.89976 0.97823 0.91729 1.22779 0.96297 0.95502 0.98544 0.89064 1.21814 0.95982 1.01714 0.95855 1.20719 0.87991 0.93742 0.95295 1.43199 1.01660 1.82946 1.02676 1.19009 0.97645 1.38773 0.83145 0.92242 1.24912 0.98232 0.97733 0.97482 1.70012 1.08156 1.39394 1.37063 0.86422 0.77435 0.78711 0.84468 1.21058 1.21684 1.21110 1.20004 0.92429 0.96188 0.87031 1.22710 0.95237 0.79962 1.00727 0.90878 1.21587 0.96295 0.96565 1.00518 1.20224 0.93002 0.91983 1.02758 0.90107 0.89283 0.90880 0.81468 0.87812 0.88926 0.90415 0.91033 0.92601 0.92193 0.96211 0.92542 0.93765 0.88409 0.95384 0.89883 0.90348 0.89986 0.89094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.67 10.24 36.00 0.37 -0.30 16 2 C 0.21 2.77 7.94 -155.76 -1.24 1.53 16 3 N -0.50 -7.36 11.27 -11.02 -0.12 -7.48 16 4 C -0.03 -0.33 11.84 -17.95 -0.21 -0.54 16 5 C -0.03 -0.33 6.57 -81.73 -0.54 -0.87 16 6 N -0.45 -5.89 3.13 -109.43 -0.34 -6.24 16 7 C 0.12 1.55 5.70 -3.91 -0.02 1.53 16 8 C -0.11 -1.43 2.37 -91.56 -0.22 -1.64 16 9 H 0.09 1.05 8.06 -51.93 -0.42 0.63 16 10 C 0.55 9.55 7.10 -10.98 -0.08 9.48 16 11 O -0.51 -11.57 15.12 5.56 0.08 -11.49 16 12 N -0.63 -10.19 3.36 -187.51 -0.63 -10.82 16 13 C 0.09 1.09 7.79 -11.39 -0.09 1.00 16 14 C -0.11 -1.55 4.52 -90.15 -0.41 -1.96 16 15 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 16 C -0.11 -1.75 5.75 -26.63 -0.15 -1.90 16 17 C 0.15 2.94 6.47 -3.95 -0.03 2.92 16 18 N -0.58 -14.35 3.01 -175.61 -0.53 -14.88 16 19 C -0.26 -7.16 9.49 -15.06 -0.14 -7.30 16 20 H 0.06 1.65 7.85 -52.49 -0.41 1.24 16 21 C 0.02 0.44 4.89 -17.43 -0.09 0.36 16 22 N -0.90 -26.85 11.09 55.49 0.62 -26.23 16 23 Si 0.90 23.00 29.58 -169.99 -5.03 17.97 16 24 H -0.28 -7.39 7.11 56.52 0.40 -6.99 16 25 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 26 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 27 C 0.17 4.04 4.49 -5.91 -0.03 4.02 16 28 C 0.12 2.08 4.04 -77.69 -0.31 1.76 16 29 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 30 C -0.11 -1.35 5.24 -26.39 -0.14 -1.49 16 31 C -0.04 -0.41 6.31 -27.61 -0.17 -0.58 16 32 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.07 0.62 7.59 -51.93 -0.39 0.22 16 35 H 0.17 1.73 8.06 -52.49 -0.42 1.31 16 36 H 0.10 1.55 7.53 -51.93 -0.39 1.16 16 37 H 0.09 1.08 7.72 -51.93 -0.40 0.68 16 38 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.07 0.71 8.10 -51.93 -0.42 0.29 16 40 H 0.06 0.69 8.14 -51.92 -0.42 0.27 16 41 H 0.06 1.00 7.76 -51.93 -0.40 0.60 16 42 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.06 1.11 7.88 -51.93 -0.41 0.70 16 44 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 45 H 0.10 2.75 5.12 -51.93 -0.27 2.49 16 46 H 0.03 0.73 7.93 -51.93 -0.41 0.32 16 47 H 0.08 0.98 8.11 -51.93 -0.42 0.56 16 48 H 0.08 1.12 8.12 -51.93 -0.42 0.70 16 49 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 50 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 390.04 15.07 5.88 5.88 Total: -1.00 -35.16 390.04 -11.70 -46.86 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -8.13 Total: 0.39 kcal Atomic # 6 Polarization: 9.51 SS G_CDS: -3.49 Total: 6.02 kcal Atomic # 7 Polarization: -64.63 SS G_CDS: -1.01 Total: -65.64 kcal Atomic # 8 Polarization: -11.57 SS G_CDS: 0.08 Total: -11.49 kcal Atomic # 14 Polarization: 23.00 SS G_CDS: -5.03 Total: 17.97 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -35.16 -11.70 -46.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084612621.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.217 kcal (2) G-P(sol) polarization free energy of solvation -35.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds