Wall clock time and date at job start Wed Apr 1 2020 02:58:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30779 * 125.72912 * 2 1 4 4 C 1.34425 * 109.32585 * 179.97438 * 3 2 1 5 5 C 1.33867 * 107.79487 * 359.97438 * 4 3 2 6 6 N 1.34411 * 125.71681 * 179.97438 * 2 1 3 7 7 C 1.46468 * 128.44617 * 0.13021 * 6 2 1 8 8 C 1.53287 * 108.69599 * 162.71814 * 7 6 2 9 9 H 1.09004 * 109.42562 * 290.66236 * 8 7 6 10 10 C 1.50706 * 109.42738 * 170.81393 * 8 7 6 11 11 O 1.21275 * 120.00504 * 332.90962 * 10 8 7 12 12 N 1.34780 * 119.99564 * 152.90821 * 10 8 7 13 13 C 1.47290 * 136.54518 * 4.33568 * 12 10 8 14 14 C 1.54374 * 87.49852 * 151.46601 * 13 12 10 15 15 H 1.08996 * 114.92128 * 141.75267 * 14 13 12 16 16 C 1.53065 * 112.44915 * 274.15850 * 14 13 12 17 17 C 1.53139 * 109.21609 * 142.78291 * 16 14 13 18 18 N 1.46542 * 108.25302 * 301.58709 * 17 16 14 19 19 C 1.36937 * 119.73894 * 236.40350 * 18 17 16 20 20 H 1.07999 * 119.99977 * 26.31248 * 19 18 17 21 21 C 1.38809 * 119.99651 * 206.31910 * 19 18 17 22 22 N 1.31621 * 120.00247 * 15.71796 * 21 19 18 23 23 Si 1.86796 * 119.99827 * 195.71430 * 21 19 18 24 24 H 1.48499 * 109.47233 * 59.99768 * 23 21 19 25 25 H 1.48501 * 109.47111 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47211 * 299.99614 * 23 21 19 27 27 C 1.44783 * 120.89393 * 55.60176 * 18 17 16 28 28 C 1.46462 * 136.54322 * 184.71386 * 12 10 8 29 29 H 1.08997 * 111.44509 * 96.33624 * 28 12 10 30 30 C 1.53121 * 109.70901 * 50.74528 * 8 7 6 31 31 C 1.50705 * 128.67640 * 180.14678 * 5 4 3 32 32 H 1.09001 * 109.47471 * 270.00572 * 1 2 3 33 33 H 1.09003 * 109.46874 * 29.99347 * 1 2 3 34 34 H 1.08998 * 109.47852 * 149.99711 * 1 2 3 35 35 H 1.07999 * 126.10495 * 180.02562 * 4 3 2 36 36 H 1.09000 * 109.59683 * 282.47609 * 7 6 2 37 37 H 1.08998 * 109.60371 * 42.95005 * 7 6 2 38 38 H 1.08998 * 113.53206 * 266.09187 * 13 12 10 39 39 H 1.09003 * 113.52667 * 36.72909 * 13 12 10 40 40 H 1.09009 * 109.50753 * 262.70212 * 16 14 13 41 41 H 1.09000 * 109.51586 * 22.80469 * 16 14 13 42 42 H 1.09007 * 109.70900 * 61.27216 * 17 16 14 43 43 H 1.08998 * 109.70957 * 181.89579 * 17 16 14 44 44 H 0.96996 * 119.99907 * 180.02562 * 22 21 19 45 45 H 1.08998 * 109.76536 * 199.61908 * 27 18 17 46 46 H 1.09003 * 107.24645 * 81.73748 * 27 18 17 47 47 H 1.09004 * 109.49653 * 170.13711 * 30 8 7 48 48 H 1.08999 * 109.51030 * 50.03121 * 30 8 7 49 49 H 1.08999 * 109.74956 * 283.77974 * 31 5 4 50 50 H 1.08994 * 109.75113 * 44.45739 * 31 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2706 1.0616 0.0000 4 6 3.5602 0.6820 0.0006 5 6 3.5927 -0.6562 0.0015 6 7 2.2916 -1.0913 0.0005 7 6 1.8919 -2.5004 -0.0015 8 6 3.0924 -3.3511 -0.4314 9 1 3.3038 -3.1732 -1.4858 10 6 2.7734 -4.8093 -0.2240 11 8 1.9750 -5.1405 0.6267 12 7 3.3754 -5.7455 -0.9842 13 6 4.4169 -5.7697 -2.0253 14 6 4.7538 -7.2024 -1.5597 15 1 5.0061 -7.8981 -2.3599 16 6 5.7413 -7.2199 -0.3903 17 6 5.3637 -8.3503 0.5714 18 7 3.9909 -8.1227 1.0308 19 6 3.7300 -8.0293 2.3719 20 1 4.5029 -7.7003 3.0507 21 6 2.4723 -8.3577 2.8587 22 7 1.6345 -9.0422 2.1090 23 14 1.9687 -7.8283 4.5778 24 1 2.0148 -6.3471 4.6731 25 1 0.5886 -8.3001 4.8567 26 1 2.9027 -8.4175 5.5707 27 6 2.9048 -7.9773 0.0845 28 6 3.2847 -7.1975 -1.1528 29 1 2.6375 -7.4619 -1.9891 30 6 4.3184 -2.9740 0.4049 31 6 4.7918 -1.5692 0.0054 32 1 -0.3634 0.0001 1.0277 33 1 -0.3633 0.8901 -0.5138 34 1 -0.3635 -0.8899 -0.5138 35 1 4.4171 1.3394 0.0011 36 1 1.5769 -2.7924 1.0003 37 1 1.0704 -2.6465 -0.7028 38 1 4.0198 -5.7239 -3.0394 39 1 5.2209 -5.0540 -1.8532 40 1 6.7503 -7.3853 -0.7683 41 1 5.7010 -6.2655 0.1347 42 1 5.4242 -9.3082 0.0547 43 1 6.0418 -8.3489 1.4247 44 1 0.7554 -9.2713 2.4491 45 1 2.0605 -7.4833 0.5654 46 1 2.5988 -8.9803 -0.2129 47 1 5.1178 -3.6924 0.2231 48 1 4.0544 -2.9826 1.4624 49 1 5.2356 -1.5985 -0.9897 50 1 5.5263 -1.2093 0.7257 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084612621.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:47 Heat of formation + Delta-G solvation = 68.027669 kcal Electronic energy + Delta-G solvation = -31985.307324 eV Core-core repulsion = 28014.440586 eV Total energy + Delta-G solvation = -3970.866738 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.43256 -41.95872 -39.72420 -37.19431 -37.10869 -34.39605 -34.00045 -32.45655 -31.93292 -31.14370 -30.16403 -28.59925 -27.43773 -25.85167 -25.61962 -24.25940 -23.37876 -22.61018 -21.97980 -20.96334 -19.93226 -19.47534 -18.64374 -17.75849 -17.56613 -17.28964 -17.04726 -16.58934 -16.25408 -15.73874 -15.53694 -15.38957 -15.05980 -14.95272 -14.73465 -14.58347 -14.54359 -14.18560 -14.04008 -13.97810 -13.81027 -13.56944 -13.25834 -13.16587 -12.89551 -12.85775 -12.76309 -12.67525 -12.38093 -12.25502 -12.19377 -12.05581 -11.97163 -11.74824 -11.48248 -11.06897 -10.99014 -10.69681 -10.57225 -10.32246 -9.54368 -9.16883 -8.64584 -7.86486 -5.30950 1.02694 1.33204 1.39893 1.43163 1.50321 1.70072 2.03310 2.09478 2.46508 3.21761 3.27783 3.31372 3.44195 3.48225 3.55186 3.73988 3.75365 3.87982 3.98926 4.08184 4.13589 4.21143 4.25681 4.35343 4.47384 4.47794 4.52031 4.57537 4.62632 4.64522 4.69501 4.77237 4.81351 4.83841 4.87485 4.94313 4.95802 4.98421 5.07423 5.09397 5.15036 5.33304 5.41614 5.43646 5.56473 5.70518 5.80088 5.80664 6.17705 6.39058 6.94117 7.07280 7.20272 7.25186 7.98661 8.34309 9.16931 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.011727 B = 0.003881 C = 0.003317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2387.163690 B = 7212.055694 C = 8438.122595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.192 3.808 3 N -0.526 5.526 4 C -0.041 4.041 5 C -0.032 4.032 6 N -0.453 5.453 7 C 0.124 3.876 8 C -0.093 4.093 9 H 0.125 0.875 10 C 0.539 3.461 11 O -0.579 6.579 12 N -0.635 5.635 13 C 0.110 3.890 14 C -0.103 4.103 15 H 0.127 0.873 16 C -0.102 4.102 17 C 0.139 3.861 18 N -0.599 5.599 19 C -0.257 4.257 20 H 0.057 0.943 21 C -0.038 4.038 22 N -0.930 5.930 23 Si 0.950 3.050 24 H -0.295 1.295 25 H -0.294 1.294 26 H -0.268 1.268 27 C 0.185 3.815 28 C 0.103 3.897 29 H 0.091 0.909 30 C -0.107 4.107 31 C -0.030 4.030 32 H 0.083 0.917 33 H 0.099 0.901 34 H 0.084 0.916 35 H 0.190 0.810 36 H 0.073 0.927 37 H 0.104 0.896 38 H 0.116 0.884 39 H 0.102 0.898 40 H 0.100 0.900 41 H 0.046 0.954 42 H 0.025 0.975 43 H 0.049 0.951 44 H 0.244 0.756 45 H 0.045 0.955 46 H -0.012 1.012 47 H 0.093 0.907 48 H 0.044 0.956 49 H 0.114 0.886 50 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.627 13.967 -14.308 21.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.069 4.069 3 N -0.247 5.247 4 C -0.187 4.187 5 C -0.146 4.146 6 N -0.136 5.136 7 C 0.001 3.999 8 C -0.115 4.115 9 H 0.143 0.857 10 C 0.328 3.672 11 O -0.458 6.458 12 N -0.370 5.370 13 C -0.011 4.011 14 C -0.122 4.122 15 H 0.145 0.855 16 C -0.141 4.141 17 C 0.014 3.986 18 N -0.323 5.323 19 C -0.388 4.388 20 H 0.074 0.926 21 C -0.234 4.234 22 N -0.577 5.577 23 Si 0.779 3.221 24 H -0.222 1.222 25 H -0.220 1.220 26 H -0.193 1.193 27 C 0.058 3.942 28 C -0.001 4.001 29 H 0.109 0.891 30 C -0.145 4.145 31 C -0.068 4.068 32 H 0.102 0.898 33 H 0.118 0.882 34 H 0.103 0.897 35 H 0.207 0.793 36 H 0.091 0.909 37 H 0.122 0.878 38 H 0.134 0.866 39 H 0.120 0.880 40 H 0.118 0.882 41 H 0.065 0.935 42 H 0.043 0.957 43 H 0.068 0.932 44 H 0.053 0.947 45 H 0.064 0.936 46 H 0.006 0.994 47 H 0.111 0.889 48 H 0.063 0.937 49 H 0.132 0.868 50 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 7.597 14.551 -13.692 21.376 hybrid contribution -0.964 -1.014 1.582 2.112 sum 6.633 13.537 -12.110 19.336 Atomic orbital electron populations 1.20296 0.83261 1.04925 1.04174 1.23672 0.96878 0.81016 1.05354 1.70425 1.03092 1.28884 1.22271 1.22226 0.94928 0.92630 1.08927 1.21641 0.86143 0.95809 1.11027 1.45347 1.06954 1.06915 1.54412 1.21647 0.97763 0.76823 1.03649 1.21371 0.96486 0.89570 1.04039 0.85673 1.20178 0.79659 0.87118 0.80259 1.90803 1.37344 1.82707 1.34959 1.49603 1.40854 1.07903 1.38618 1.23614 0.89110 0.96489 0.91877 1.22822 0.92277 0.98351 0.98718 0.85468 1.21681 0.98722 0.98614 0.95115 1.20973 0.85135 0.96063 0.96421 1.43444 1.03795 1.83237 1.01779 1.19301 0.97411 1.37012 0.85068 0.92566 1.25544 0.98701 0.98671 1.00488 1.70168 1.07998 1.41191 1.38297 0.85608 0.77193 0.77501 0.81781 1.22184 1.21979 1.19337 1.19588 0.91084 0.94602 0.88890 1.22705 0.99016 0.80588 0.97815 0.89117 1.21552 0.96036 0.98511 0.98418 1.20312 0.92099 0.89405 1.04961 0.89809 0.88207 0.89723 0.79311 0.90851 0.87768 0.86633 0.87953 0.88153 0.93512 0.95730 0.93191 0.94697 0.93611 0.99411 0.88871 0.93671 0.86837 0.87420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.30 10.24 71.23 0.73 -0.57 16 2 C 0.19 5.03 7.94 138.25 1.10 6.12 16 3 N -0.53 -15.11 11.27 -188.78 -2.13 -17.24 16 4 C -0.04 -0.98 11.84 83.30 0.99 0.00 16 5 C -0.03 -0.73 6.57 40.73 0.27 -0.47 16 6 N -0.45 -11.46 3.13 -500.14 -1.57 -13.02 16 7 C 0.12 3.21 5.70 86.48 0.49 3.71 16 8 C -0.09 -2.24 2.37 -11.40 -0.03 -2.27 16 9 H 0.13 2.24 8.06 -2.38 -0.02 2.22 16 10 C 0.54 18.65 7.10 87.66 0.62 19.28 16 11 O -0.58 -27.85 15.12 -3.02 -0.05 -27.89 16 12 N -0.64 -19.15 3.36 -865.54 -2.91 -22.06 16 13 C 0.11 1.90 7.79 81.19 0.63 2.53 16 14 C -0.10 -2.37 4.52 -10.49 -0.05 -2.41 16 15 H 0.13 2.14 8.14 -2.39 -0.02 2.12 16 16 C -0.10 -2.73 5.75 30.66 0.18 -2.56 16 17 C 0.14 5.34 6.47 86.42 0.56 5.90 16 18 N -0.60 -30.28 3.01 -709.51 -2.14 -32.42 16 19 C -0.26 -14.92 9.49 84.03 0.80 -14.13 16 20 H 0.06 3.22 7.85 -2.91 -0.02 3.19 16 21 C -0.04 -2.31 4.89 84.86 0.42 -1.89 16 22 N -0.93 -58.72 11.09 21.65 0.24 -58.48 16 23 Si 0.95 49.46 29.58 68.60 2.03 51.49 16 24 H -0.29 -15.68 7.11 99.48 0.71 -14.97 16 25 H -0.29 -15.27 7.11 99.48 0.71 -14.57 16 26 H -0.27 -13.06 7.11 99.48 0.71 -12.36 16 27 C 0.19 9.17 4.49 86.08 0.39 9.56 16 28 C 0.10 3.52 4.04 38.69 0.16 3.67 16 29 H 0.09 2.76 8.14 -2.39 -0.02 2.74 16 30 C -0.11 -2.35 5.24 30.81 0.16 -2.19 16 31 C -0.03 -0.48 6.31 30.03 0.19 -0.29 16 32 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.08 1.38 7.59 -2.39 -0.02 1.36 16 35 H 0.19 3.45 8.06 -2.91 -0.02 3.43 16 36 H 0.07 2.36 7.53 -2.39 -0.02 2.34 16 37 H 0.10 2.39 7.72 -2.39 -0.02 2.37 16 38 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.10 1.26 8.10 -2.39 -0.02 1.24 16 40 H 0.10 1.88 8.14 -2.38 -0.02 1.86 16 41 H 0.05 1.39 7.76 -2.39 -0.02 1.37 16 42 H 0.02 0.93 8.14 -2.38 -0.02 0.91 16 43 H 0.05 1.94 7.88 -2.39 -0.02 1.92 16 44 H 0.24 15.16 8.31 -92.71 -0.77 14.39 16 45 H 0.05 2.75 5.12 -2.39 -0.01 2.73 16 46 H -0.01 -0.66 7.93 -2.39 -0.02 -0.68 16 47 H 0.09 1.87 8.11 -2.39 -0.02 1.85 16 48 H 0.04 1.29 8.12 -2.39 -0.02 1.27 16 49 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 50 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -85.90 390.04 2.01 -83.89 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: 0.93 Total: 11.73 kcal Atomic # 6 Polarization: 16.40 SS G_CDS: 7.60 Total: 23.99 kcal Atomic # 7 Polarization: -134.71 SS G_CDS: -8.50 Total: -143.21 kcal Atomic # 8 Polarization: -27.85 SS G_CDS: -0.05 Total: -27.89 kcal Atomic # 14 Polarization: 49.46 SS G_CDS: 2.03 Total: 51.49 kcal Total: -85.90 2.01 -83.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084612621.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.913 kcal (2) G-P(sol) polarization free energy of solvation -85.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.885 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds