Wall clock time and date at job start Wed Apr 1 2020 03:52:50
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53007 * 1
3 3 C 1.52995 * 109.47398 * 2 1
4 4 C 1.52998 * 109.46708 * 120.00655 * 2 1 3
5 5 C 1.50707 * 109.47035 * 240.00053 * 2 1 3
6 6 N 1.31865 * 118.95227 * 239.74014 * 5 2 1
7 7 C 1.32146 * 120.96595 * 179.71775 * 6 5 2
8 8 C 1.39954 * 118.92299 * 0.53722 * 7 6 5
9 9 C 1.47829 * 120.93860 * 179.75209 * 8 7 6
10 10 O 1.21553 * 120.00203 * 187.30524 * 9 8 7
11 11 N 1.34779 * 119.99889 * 7.31489 * 9 8 7
12 12 C 1.47278 * 136.54742 * 4.38852 * 11 9 8
13 13 C 1.54350 * 87.50808 * 151.47783 * 12 11 9
14 14 H 1.08998 * 115.79413 * 141.80634 * 13 12 11
15 15 C 1.53068 * 111.57463 * 274.17171 * 13 12 11
16 16 C 1.53148 * 109.21203 * 142.37623 * 15 13 12
17 17 N 1.46540 * 108.25560 * 301.58995 * 16 15 13
18 18 C 1.36930 * 119.74055 * 236.40301 * 17 16 15
19 19 H 1.08004 * 119.99846 * 150.47557 * 18 17 16
20 20 C 1.38812 * 120.00161 * 330.47095 * 18 17 16
21 21 N 1.31619 * 120.00092 * 146.89279 * 20 18 17
22 22 Si 1.86805 * 120.00048 * 326.89689 * 20 18 17
23 23 H 1.48498 * 109.47000 * 95.72960 * 22 20 18
24 24 H 1.48493 * 109.47006 * 215.73068 * 22 20 18
25 25 H 1.48494 * 109.47105 * 335.73145 * 22 20 18
26 26 C 1.45707 * 120.51900 * 56.42091 * 17 16 15
27 27 C 1.46465 * 136.53931 * 184.76479 * 11 9 8
28 28 H 1.08998 * 111.44318 * 97.06174 * 27 11 9
29 29 C 1.39948 * 118.12096 * 359.73368 * 8 7 6
30 30 N 1.31875 * 118.94798 * 60.00160 * 5 2 1
31 31 H 1.09003 * 109.46771 * 59.99396 * 1 2 3
32 32 H 1.08992 * 109.47425 * 179.97438 * 1 2 3
33 33 H 1.09000 * 109.46530 * 300.00144 * 1 2 3
34 34 H 1.09008 * 109.47077 * 60.00367 * 3 2 1
35 35 H 1.08998 * 109.47170 * 179.97438 * 3 2 1
36 36 H 1.08998 * 109.47576 * 300.00533 * 3 2 1
37 37 H 1.09001 * 109.47405 * 59.99992 * 4 2 1
38 38 H 1.09004 * 109.46634 * 179.97438 * 4 2 1
39 39 H 1.09000 * 109.46972 * 299.98930 * 4 2 1
40 40 H 1.07995 * 120.53940 * 180.29123 * 7 6 5
41 41 H 1.09000 * 113.53510 * 266.10699 * 12 11 9
42 42 H 1.09004 * 113.52758 * 36.73774 * 12 11 9
43 43 H 1.08997 * 109.51690 * 22.45622 * 15 13 12
44 44 H 1.09004 * 109.51420 * 262.29572 * 15 13 12
45 45 H 1.09003 * 109.70553 * 181.90199 * 16 15 13
46 46 H 1.08996 * 109.71091 * 61.28451 * 16 15 13
47 47 H 0.96997 * 119.99785 * 180.02562 * 21 20 18
48 48 H 1.08999 * 108.78411 * 199.11409 * 26 17 16
49 49 H 1.08999 * 108.69571 * 80.83578 * 26 17 16
50 50 H 1.07997 * 120.53742 * 180.02562 * 29 8 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0401 1.4424 0.0000
4 6 2.0400 -0.7214 1.2492
5 6 2.0324 -0.7104 -1.2305
6 7 2.7934 -1.7776 -1.0856
7 6 3.2511 -2.4342 -2.1371
8 6 2.9251 -1.9730 -3.4176
9 6 3.4175 -2.6701 -4.6246
10 8 3.2373 -2.1833 -5.7237
11 7 4.0661 -3.8456 -4.5064
12 6 4.4054 -4.7745 -3.4151
13 6 4.3759 -5.9086 -4.4617
14 1 5.1345 -6.6824 -4.3441
15 6 2.9599 -6.4553 -4.6594
16 6 2.7493 -6.7853 -6.1400
17 7 2.9669 -5.5629 -6.9183
18 6 1.9799 -5.1007 -7.7473
19 1 1.8921 -4.0425 -7.9447
20 6 1.0923 -5.9922 -8.3340
21 7 -0.1528 -5.6294 -8.5587
22 14 1.6649 -7.7070 -8.8046
23 1 1.3248 -8.6584 -7.7163
24 1 0.9898 -8.1274 -10.0586
25 1 3.1351 -7.6981 -9.0128
26 6 4.2254 -4.8356 -6.8172
27 6 4.7578 -4.7732 -5.4045
28 1 5.8351 -4.6078 -5.3954
29 6 2.1195 -0.8336 -3.5231
30 7 1.7012 -0.2420 -2.4179
31 1 -0.3633 0.5139 -0.8900
32 1 -0.3634 -1.0276 -0.0005
33 1 -0.3632 0.5139 0.8900
34 1 1.6768 1.9563 0.8901
35 1 3.1301 1.4424 0.0005
36 1 1.6768 1.9564 -0.8899
37 1 1.6766 -1.7491 1.2491
38 1 3.1300 -0.7218 1.2489
39 1 1.6767 -0.2075 2.1392
40 1 3.8700 -3.3101 -2.0103
41 1 5.3934 -4.6022 -2.9882
42 1 3.6262 -4.8589 -2.6575
43 1 2.2331 -5.7056 -4.3466
44 1 2.8318 -7.3588 -4.0632
45 1 1.7317 -7.1438 -6.2955
46 1 3.4606 -7.5505 -6.4508
47 1 -0.7731 -6.2525 -8.9683
48 1 4.0735 -3.8191 -7.1803
49 1 4.9647 -5.3270 -7.4497
50 1 1.8437 -0.4442 -4.4920
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001084869627.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:52:50
Heat of formation + Delta-G solvation = 87.629120 kcal
Electronic energy + Delta-G solvation = -31224.571099 eV
Core-core repulsion = 27254.554343 eV
Total energy + Delta-G solvation = -3970.016756 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 344.195 amu
Computer time = 1.16 seconds
Orbital eigenvalues (eV)
-41.57904 -40.70514 -38.04510 -36.78325 -35.60497 -33.99601 -32.21640 -31.62546
-31.16771 -29.12092 -27.58766 -27.51699 -27.37277 -25.22281 -24.67780 -23.65875
-23.26401 -21.42495 -20.70974 -20.09958 -18.36101 -17.66386 -17.24043 -16.69189
-16.53485 -15.89435 -15.50575 -15.23853 -15.02429 -14.66240 -14.20375 -14.09119
-13.90685 -13.82189 -13.66930 -13.46614 -13.38030 -12.82744 -12.68075 -12.47434
-12.38511 -12.25804 -11.99303 -11.86597 -11.82433 -11.53382 -11.26627 -11.25438
-11.15540 -11.10543 -10.96916 -10.90819 -10.61546 -10.39349 -10.06028 -9.80968
-9.60493 -9.52306 -9.38770 -9.34088 -8.58143 -8.34727 -6.90177 -5.96289
-3.20110 0.37154 0.91687 2.84263 2.96931 3.37035 3.52754 3.53232
3.58804 3.72419 3.88904 4.29671 4.33588 4.48160 4.60001 4.64683
4.71103 4.71589 4.78317 4.92214 4.93597 5.13236 5.17645 5.23580
5.34624 5.38411 5.40418 5.49485 5.57304 5.58889 5.60578 5.64343
5.67940 5.68471 5.76568 5.80961 5.88348 5.94336 6.04476 6.16095
6.16893 6.20805 6.27018 6.33319 6.57905 6.74732 6.75235 6.79003
6.93949 7.86247 7.91454 8.06855 8.33824 8.44349 9.05944 9.80206
10.15645 11.19346
Molecular weight = 344.20amu
Principal moments of inertia in cm(-1)
A = 0.016887 B = 0.002987 C = 0.002825
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1657.706660 B = 9370.186952 C = 9910.662841
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.137 4.137
2 C -0.002 4.002
3 C -0.136 4.136
4 C -0.128 4.128
5 C 0.338 3.662
6 N -0.517 5.517
7 C 0.170 3.830
8 C -0.231 4.231
9 C 0.597 3.403
10 O -0.510 6.510
11 N -0.627 5.627
12 C 0.083 3.917
13 C -0.109 4.109
14 H 0.099 0.901
15 C -0.117 4.117
16 C 0.138 3.862
17 N -0.591 5.591
18 C -0.261 4.261
19 H 0.082 0.918
20 C 0.034 3.966
21 N -0.888 5.888
22 Si 0.853 3.147
23 H -0.289 1.289
24 H -0.300 1.300
25 H -0.272 1.272
26 C 0.141 3.859
27 C 0.129 3.871
28 H 0.083 0.917
29 C 0.209 3.791
30 N -0.514 5.514
31 H 0.069 0.931
32 H 0.055 0.945
33 H 0.066 0.934
34 H 0.066 0.934
35 H 0.053 0.947
36 H 0.068 0.932
37 H 0.062 0.938
38 H 0.061 0.939
39 H 0.058 0.942
40 H 0.177 0.823
41 H 0.087 0.913
42 H 0.080 0.920
43 H 0.066 0.934
44 H 0.060 0.940
45 H 0.074 0.926
46 H 0.022 0.978
47 H 0.261 0.739
48 H 0.079 0.921
49 H 0.024 0.976
50 H 0.183 0.817
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.883 6.687 20.569 23.382
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.195 4.195
2 C -0.004 4.004
3 C -0.194 4.194
4 C -0.186 4.186
5 C 0.072 3.928
6 N -0.230 5.230
7 C 0.004 3.996
8 C -0.239 4.239
9 C 0.385 3.615
10 O -0.385 6.385
11 N -0.363 5.363
12 C -0.040 4.040
13 C -0.128 4.128
14 H 0.117 0.883
15 C -0.157 4.157
16 C 0.012 3.988
17 N -0.314 5.314
18 C -0.389 4.389
19 H 0.100 0.900
20 C -0.166 4.166
21 N -0.529 5.529
22 Si 0.681 3.319
23 H -0.216 1.216
24 H -0.228 1.228
25 H -0.197 1.197
26 C 0.015 3.985
27 C 0.025 3.975
28 H 0.101 0.899
29 C 0.043 3.957
30 N -0.227 5.227
31 H 0.088 0.912
32 H 0.074 0.926
33 H 0.085 0.915
34 H 0.085 0.915
35 H 0.072 0.928
36 H 0.087 0.913
37 H 0.081 0.919
38 H 0.080 0.920
39 H 0.077 0.923
40 H 0.193 0.807
41 H 0.105 0.895
42 H 0.098 0.902
43 H 0.085 0.915
44 H 0.078 0.922
45 H 0.093 0.907
46 H 0.040 0.960
47 H 0.071 0.929
48 H 0.097 0.903
49 H 0.042 0.958
50 H 0.200 0.800
Dipole moment (debyes) X Y Z Total
from point charges 8.174 7.655 20.658 23.498
hybrid contribution 0.654 -1.620 -1.171 2.103
sum 8.828 6.035 19.487 22.228
Atomic orbital electron populations
1.21856 0.92272 1.02413 1.02967 1.19445 0.96482 0.94988 0.89452
1.21845 1.00944 0.93628 1.02962 1.21719 1.01708 1.00388 0.94757
1.23339 0.88128 0.88306 0.93051 1.68302 1.12008 1.08632 1.34064
1.23959 0.92423 0.96293 0.86961 1.21853 1.05093 1.00844 0.96095
1.17059 0.78121 0.78628 0.87676 1.90844 1.56162 1.64808 1.26677
1.49217 1.54631 1.19855 1.12584 1.23603 1.00392 0.87652 0.92333
1.22853 0.99739 0.95216 0.95017 0.88340 1.21869 0.93768 1.00166
0.99873 1.21079 1.00141 0.88792 0.88763 1.43773 1.13381 1.26698
1.47577 1.18849 1.04990 0.93292 1.21719 0.90017 1.25266 0.95317
0.97043 0.98969 1.70060 1.02294 1.36652 1.43917 0.87212 0.79666
0.86897 0.78113 1.21599 1.22751 1.19718 1.20330 0.88422 0.98652
0.91126 1.22396 0.95557 0.85142 0.94376 0.89911 1.23549 0.86294
0.87952 0.97953 1.68303 1.23441 1.32410 0.98533 0.91232 0.92607
0.91473 0.91482 0.92775 0.91275 0.91895 0.91978 0.92302 0.80662
0.89518 0.90208 0.91517 0.92170 0.90730 0.96009 0.92903 0.90268
0.95824 0.80016
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.24 8.37 37.16 0.31 -0.93 16
2 C 0.00 -0.02 0.92 -155.66 -0.14 -0.16 16
3 C -0.14 -1.15 8.37 37.16 0.31 -0.84 16
4 C -0.13 -1.08 7.66 37.16 0.28 -0.80 16
5 C 0.34 4.30 6.25 -157.06 -0.98 3.32 16
6 N -0.52 -6.58 8.98 -10.39 -0.09 -6.67 16
7 C 0.17 2.14 10.42 -16.77 -0.17 1.96 16
8 C -0.23 -3.44 5.91 -104.69 -0.62 -4.05 16
9 C 0.60 10.49 7.97 -12.34 -0.10 10.39 16
10 O -0.51 -11.05 15.65 5.32 0.08 -10.97 16
11 N -0.63 -9.55 3.31 -188.70 -0.62 -10.17 16
12 C 0.08 0.89 5.63 -11.42 -0.06 0.82 16
13 C -0.11 -1.40 4.57 -90.16 -0.41 -1.81 16
14 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16
15 C -0.12 -1.91 5.71 -26.62 -0.15 -2.06 16
16 C 0.14 2.92 4.35 -3.94 -0.02 2.90 16
17 N -0.59 -14.13 2.71 -174.89 -0.47 -14.60 16
18 C -0.26 -7.50 9.78 -15.06 -0.15 -7.64 16
19 H 0.08 2.63 8.02 -52.48 -0.42 2.20 16
20 C 0.03 1.00 4.86 -17.43 -0.08 0.91 16
21 N -0.89 -27.59 13.97 55.49 0.78 -26.81 16
22 Si 0.85 21.94 25.30 -169.99 -4.30 17.64 16
23 H -0.29 -7.13 6.88 56.52 0.39 -6.75 16
24 H -0.30 -7.88 7.11 56.52 0.40 -7.48 16
25 H -0.27 -6.93 7.11 56.52 0.40 -6.53 16
26 C 0.14 2.86 6.12 -5.42 -0.03 2.83 16
27 C 0.13 1.96 4.03 -77.70 -0.31 1.65 16
28 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16
29 C 0.21 3.09 10.88 -16.78 -0.18 2.90 16
30 N -0.51 -7.14 9.77 -10.39 -0.10 -7.24 16
31 H 0.07 0.69 8.01 -51.93 -0.42 0.28 16
32 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16
33 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16
34 H 0.07 0.44 8.14 -51.92 -0.42 0.01 16
35 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16
36 H 0.07 0.64 8.01 -51.93 -0.42 0.23 16
37 H 0.06 0.58 8.04 -51.93 -0.42 0.16 16
38 H 0.06 0.55 8.03 -51.93 -0.42 0.13 16
39 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16
40 H 0.18 1.76 4.37 -52.49 -0.23 1.53 16
41 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16
42 H 0.08 0.78 6.60 -51.93 -0.34 0.44 16
43 H 0.07 1.23 7.69 -51.93 -0.40 0.83 16
44 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16
45 H 0.07 1.78 5.39 -51.93 -0.28 1.50 16
46 H 0.02 0.44 7.70 -51.93 -0.40 0.04 16
47 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16
48 H 0.08 1.81 6.44 -51.93 -0.33 1.48 16
49 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16
50 H 0.18 2.62 7.76 -52.49 -0.41 2.21 16
LS Contribution 388.37 15.07 5.85 5.85
Total: -1.00 -34.69 388.37 -9.25 -43.95
By element:
Atomic # 1 Polarization: 7.49 SS G_CDS: -7.86 Total: -0.36 kcal
Atomic # 6 Polarization: 11.90 SS G_CDS: -2.52 Total: 9.39 kcal
Atomic # 7 Polarization: -64.98 SS G_CDS: -0.52 Total: -65.50 kcal
Atomic # 8 Polarization: -11.05 SS G_CDS: 0.08 Total: -10.97 kcal
Atomic # 14 Polarization: 21.94 SS G_CDS: -4.30 Total: 17.64 kcal
Total LS contribution 5.85 Total: 5.85 kcal
Total: -34.69 -9.25 -43.95 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001084869627.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 131.574 kcal
(2) G-P(sol) polarization free energy of solvation -34.690 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.884 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.255 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.945 kcal
(6) G-S(sol) free energy of system = (1) + (5) 87.629 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.16 seconds