Wall clock time and date at job start Wed Apr 1 2020 03:52:49
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53007 * 1
3 3 C 1.52995 * 109.47398 * 2 1
4 4 C 1.52998 * 109.46708 * 120.00655 * 2 1 3
5 5 C 1.50707 * 109.47035 * 240.00053 * 2 1 3
6 6 N 1.31865 * 118.95227 * 239.74014 * 5 2 1
7 7 C 1.32146 * 120.96595 * 179.71775 * 6 5 2
8 8 C 1.39954 * 118.92299 * 0.53722 * 7 6 5
9 9 C 1.47829 * 120.93860 * 179.75209 * 8 7 6
10 10 O 1.21553 * 120.00203 * 187.30524 * 9 8 7
11 11 N 1.34779 * 119.99889 * 7.31489 * 9 8 7
12 12 C 1.47278 * 136.54742 * 4.38852 * 11 9 8
13 13 C 1.54350 * 87.50808 * 151.47783 * 12 11 9
14 14 H 1.08998 * 115.79413 * 141.80634 * 13 12 11
15 15 C 1.53068 * 111.57463 * 274.17171 * 13 12 11
16 16 C 1.53148 * 109.21203 * 142.37623 * 15 13 12
17 17 N 1.46540 * 108.25560 * 301.58995 * 16 15 13
18 18 C 1.36930 * 119.74055 * 236.40301 * 17 16 15
19 19 H 1.08004 * 119.99846 * 150.47557 * 18 17 16
20 20 C 1.38812 * 120.00161 * 330.47095 * 18 17 16
21 21 N 1.31619 * 120.00092 * 146.89279 * 20 18 17
22 22 Si 1.86805 * 120.00048 * 326.89689 * 20 18 17
23 23 H 1.48498 * 109.47000 * 95.72960 * 22 20 18
24 24 H 1.48493 * 109.47006 * 215.73068 * 22 20 18
25 25 H 1.48494 * 109.47105 * 335.73145 * 22 20 18
26 26 C 1.45707 * 120.51900 * 56.42091 * 17 16 15
27 27 C 1.46465 * 136.53931 * 184.76479 * 11 9 8
28 28 H 1.08998 * 111.44318 * 97.06174 * 27 11 9
29 29 C 1.39948 * 118.12096 * 359.73368 * 8 7 6
30 30 N 1.31875 * 118.94798 * 60.00160 * 5 2 1
31 31 H 1.09003 * 109.46771 * 59.99396 * 1 2 3
32 32 H 1.08992 * 109.47425 * 179.97438 * 1 2 3
33 33 H 1.09000 * 109.46530 * 300.00144 * 1 2 3
34 34 H 1.09008 * 109.47077 * 60.00367 * 3 2 1
35 35 H 1.08998 * 109.47170 * 179.97438 * 3 2 1
36 36 H 1.08998 * 109.47576 * 300.00533 * 3 2 1
37 37 H 1.09001 * 109.47405 * 59.99992 * 4 2 1
38 38 H 1.09004 * 109.46634 * 179.97438 * 4 2 1
39 39 H 1.09000 * 109.46972 * 299.98930 * 4 2 1
40 40 H 1.07995 * 120.53940 * 180.29123 * 7 6 5
41 41 H 1.09000 * 113.53510 * 266.10699 * 12 11 9
42 42 H 1.09004 * 113.52758 * 36.73774 * 12 11 9
43 43 H 1.08997 * 109.51690 * 22.45622 * 15 13 12
44 44 H 1.09004 * 109.51420 * 262.29572 * 15 13 12
45 45 H 1.09003 * 109.70553 * 181.90199 * 16 15 13
46 46 H 1.08996 * 109.71091 * 61.28451 * 16 15 13
47 47 H 0.96997 * 119.99785 * 180.02562 * 21 20 18
48 48 H 1.08999 * 108.78411 * 199.11409 * 26 17 16
49 49 H 1.08999 * 108.69571 * 80.83578 * 26 17 16
50 50 H 1.07997 * 120.53742 * 180.02562 * 29 8 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0401 1.4424 0.0000
4 6 2.0400 -0.7214 1.2492
5 6 2.0324 -0.7104 -1.2305
6 7 2.7934 -1.7776 -1.0856
7 6 3.2511 -2.4342 -2.1371
8 6 2.9251 -1.9730 -3.4176
9 6 3.4175 -2.6701 -4.6246
10 8 3.2373 -2.1833 -5.7237
11 7 4.0661 -3.8456 -4.5064
12 6 4.4054 -4.7745 -3.4151
13 6 4.3759 -5.9086 -4.4617
14 1 5.1345 -6.6824 -4.3441
15 6 2.9599 -6.4553 -4.6594
16 6 2.7493 -6.7853 -6.1400
17 7 2.9669 -5.5629 -6.9183
18 6 1.9799 -5.1007 -7.7473
19 1 1.8921 -4.0425 -7.9447
20 6 1.0923 -5.9922 -8.3340
21 7 -0.1528 -5.6294 -8.5587
22 14 1.6649 -7.7070 -8.8046
23 1 1.3248 -8.6584 -7.7163
24 1 0.9898 -8.1274 -10.0586
25 1 3.1351 -7.6981 -9.0128
26 6 4.2254 -4.8356 -6.8172
27 6 4.7578 -4.7732 -5.4045
28 1 5.8351 -4.6078 -5.3954
29 6 2.1195 -0.8336 -3.5231
30 7 1.7012 -0.2420 -2.4179
31 1 -0.3633 0.5139 -0.8900
32 1 -0.3634 -1.0276 -0.0005
33 1 -0.3632 0.5139 0.8900
34 1 1.6768 1.9563 0.8901
35 1 3.1301 1.4424 0.0005
36 1 1.6768 1.9564 -0.8899
37 1 1.6766 -1.7491 1.2491
38 1 3.1300 -0.7218 1.2489
39 1 1.6767 -0.2075 2.1392
40 1 3.8700 -3.3101 -2.0103
41 1 5.3934 -4.6022 -2.9882
42 1 3.6262 -4.8589 -2.6575
43 1 2.2331 -5.7056 -4.3466
44 1 2.8318 -7.3588 -4.0632
45 1 1.7317 -7.1438 -6.2955
46 1 3.4606 -7.5505 -6.4508
47 1 -0.7731 -6.2525 -8.9683
48 1 4.0735 -3.8191 -7.1803
49 1 4.9647 -5.3270 -7.4497
50 1 1.8437 -0.4442 -4.4920
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001084869627.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:52:49
Heat of formation + Delta-G solvation = 63.402145 kcal
Electronic energy + Delta-G solvation = -31225.621659 eV
Core-core repulsion = 27254.554343 eV
Total energy + Delta-G solvation = -3971.067316 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 344.195 amu
Computer time = 1.14 seconds
Orbital eigenvalues (eV)
-42.66418 -41.84781 -39.36950 -37.65929 -37.31724 -35.07145 -34.02874 -33.00601
-32.66394 -30.47755 -28.88152 -28.27633 -28.21299 -26.32327 -25.88130 -25.26538
-24.61887 -22.84130 -22.00096 -21.01126 -19.68057 -19.05771 -18.59386 -18.02174
-17.59809 -17.26846 -16.97695 -16.76946 -16.26106 -15.70705 -15.50660 -15.42110
-15.19972 -14.98935 -14.85184 -14.63227 -14.55724 -14.30031 -14.13524 -14.02010
-13.42066 -13.19163 -13.13562 -12.94653 -12.80736 -12.63864 -12.60452 -12.57426
-12.34166 -12.19214 -12.06852 -12.05257 -11.95365 -11.87142 -11.67268 -11.51357
-11.21836 -10.73824 -10.70581 -10.61969 -10.42794 -9.67129 -8.87131 -8.23749
-5.43894 -0.72106 -0.16218 1.29603 1.40468 1.52415 1.68577 1.76147
2.41633 2.59818 2.63034 2.87688 2.93596 3.22941 3.26148 3.42238
3.45100 3.67236 3.80019 3.85847 3.96635 3.98256 4.07983 4.28190
4.29963 4.37615 4.48027 4.48970 4.53812 4.60582 4.68459 4.76073
4.78314 4.82749 4.86434 4.94390 4.96137 4.98459 5.01889 5.02223
5.05028 5.12856 5.18078 5.24061 5.29934 5.34556 5.49792 5.55227
5.70653 5.90447 6.12814 6.71973 6.82258 6.98026 7.06129 7.69125
8.02479 8.97238
Molecular weight = 344.20amu
Principal moments of inertia in cm(-1)
A = 0.016887 B = 0.002987 C = 0.002825
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1657.706660 B = 9370.186952 C = 9910.662841
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.134 4.134
2 C -0.006 4.006
3 C -0.132 4.132
4 C -0.122 4.122
5 C 0.333 3.667
6 N -0.515 5.515
7 C 0.186 3.814
8 C -0.246 4.246
9 C 0.588 3.412
10 O -0.575 6.575
11 N -0.635 5.635
12 C 0.092 3.908
13 C -0.097 4.097
14 H 0.150 0.850
15 C -0.112 4.112
16 C 0.129 3.871
17 N -0.605 5.605
18 C -0.256 4.256
19 H 0.020 0.980
20 C -0.024 4.024
21 N -0.944 5.944
22 Si 0.936 3.064
23 H -0.266 1.266
24 H -0.307 1.307
25 H -0.262 1.262
26 C 0.138 3.862
27 C 0.118 3.882
28 H 0.128 0.872
29 C 0.196 3.804
30 N -0.524 5.524
31 H 0.053 0.947
32 H 0.046 0.954
33 H 0.094 0.906
34 H 0.093 0.907
35 H 0.051 0.949
36 H 0.054 0.946
37 H 0.054 0.946
38 H 0.059 0.941
39 H 0.082 0.918
40 H 0.209 0.791
41 H 0.141 0.859
42 H 0.093 0.907
43 H 0.034 0.966
44 H 0.099 0.901
45 H 0.040 0.960
46 H 0.045 0.955
47 H 0.262 0.738
48 H 0.034 0.966
49 H 0.036 0.964
50 H 0.169 0.831
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 11.949 4.033 24.882 27.896
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.192 4.192
2 C -0.008 4.008
3 C -0.190 4.190
4 C -0.179 4.179
5 C 0.067 3.933
6 N -0.227 5.227
7 C 0.020 3.980
8 C -0.254 4.254
9 C 0.377 3.623
10 O -0.455 6.455
11 N -0.369 5.369
12 C -0.028 4.028
13 C -0.115 4.115
14 H 0.168 0.832
15 C -0.151 4.151
16 C 0.005 3.995
17 N -0.329 5.329
18 C -0.385 4.385
19 H 0.038 0.962
20 C -0.220 4.220
21 N -0.589 5.589
22 Si 0.762 3.238
23 H -0.192 1.192
24 H -0.235 1.235
25 H -0.186 1.186
26 C 0.012 3.988
27 C 0.015 3.985
28 H 0.145 0.855
29 C 0.029 3.971
30 N -0.237 5.237
31 H 0.072 0.928
32 H 0.065 0.935
33 H 0.113 0.887
34 H 0.111 0.889
35 H 0.070 0.930
36 H 0.073 0.927
37 H 0.074 0.926
38 H 0.078 0.922
39 H 0.101 0.899
40 H 0.225 0.775
41 H 0.158 0.842
42 H 0.111 0.889
43 H 0.052 0.948
44 H 0.117 0.883
45 H 0.058 0.942
46 H 0.063 0.937
47 H 0.071 0.929
48 H 0.053 0.947
49 H 0.053 0.947
50 H 0.186 0.814
Dipole moment (debyes) X Y Z Total
from point charges 11.299 4.951 25.044 27.917
hybrid contribution -0.336 -0.700 -2.496 2.614
sum 10.963 4.251 22.548 25.430
Atomic orbital electron populations
1.21850 0.91812 1.01985 1.03579 1.19689 0.96816 0.95582 0.88681
1.21829 1.00759 0.92789 1.03582 1.21689 1.01491 1.00020 0.94742
1.24107 0.87356 0.88268 0.93560 1.68447 1.12075 1.08604 1.33623
1.24384 0.91595 0.96514 0.85553 1.21698 1.06239 1.01126 0.96298
1.17488 0.77961 0.79308 0.87539 1.90814 1.58868 1.66794 1.29066
1.49430 1.53450 1.19094 1.14925 1.23945 1.03542 0.84305 0.91042
1.22871 0.98333 0.96017 0.94322 0.83202 1.21757 0.95717 1.01191
0.96388 1.21205 0.98762 0.87794 0.91787 1.43833 1.13613 1.27939
1.47497 1.18579 1.06396 0.90817 1.22755 0.96224 1.25900 0.94887
1.01994 0.99261 1.70187 1.03737 1.38838 1.46091 0.85904 0.79103
0.81219 0.77534 1.19226 1.23527 1.18630 1.20394 0.87182 0.95821
0.95364 1.22676 0.97527 0.86955 0.91354 0.85463 1.23480 0.86946
0.88621 0.98063 1.68356 1.23886 1.32736 0.98751 0.92763 0.93525
0.88744 0.88860 0.93012 0.92679 0.92647 0.92220 0.89871 0.77474
0.84171 0.88895 0.94760 0.88288 0.94169 0.93723 0.92894 0.94700
0.94652 0.81432
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.27 8.37 71.98 0.60 -1.67 16
2 C -0.01 -0.10 0.92 -52.93 -0.05 -0.15 16
3 C -0.13 -2.02 8.37 71.98 0.60 -1.41 16
4 C -0.12 -1.72 7.66 71.98 0.55 -1.17 16
5 C 0.33 8.26 6.25 138.71 0.87 9.13 16
6 N -0.51 -12.16 8.98 -186.79 -1.68 -13.84 16
7 C 0.19 4.33 10.42 85.06 0.89 5.21 16
8 C -0.25 -7.50 5.91 -19.91 -0.12 -7.62 16
9 C 0.59 21.54 7.97 86.78 0.69 22.23 16
10 O -0.58 -27.55 15.65 -3.88 -0.06 -27.62 16
11 N -0.64 -18.29 3.31 -869.20 -2.87 -21.16 16
12 C 0.09 1.44 5.63 81.18 0.46 1.90 16
13 C -0.10 -1.94 4.57 -10.50 -0.05 -1.99 16
14 H 0.15 1.70 8.14 -2.39 -0.02 1.68 16
15 C -0.11 -3.26 5.71 30.67 0.17 -3.08 16
16 C 0.13 5.24 4.35 86.42 0.38 5.62 16
17 N -0.60 -29.56 2.71 -707.23 -1.92 -31.48 16
18 C -0.26 -15.76 9.78 84.03 0.82 -14.94 16
19 H 0.02 1.43 8.02 -2.91 -0.02 1.40 16
20 C -0.02 -1.49 4.86 84.86 0.41 -1.08 16
21 N -0.94 -62.24 13.97 21.65 0.30 -61.94 16
22 Si 0.94 46.82 25.30 68.60 1.74 48.55 16
23 H -0.27 -12.27 6.88 99.48 0.68 -11.59 16
24 H -0.31 -15.62 7.11 99.48 0.71 -14.91 16
25 H -0.26 -12.54 7.11 99.48 0.71 -11.83 16
26 C 0.14 5.66 6.12 85.91 0.53 6.19 16
27 C 0.12 3.26 4.03 38.68 0.16 3.41 16
28 H 0.13 2.48 8.14 -2.39 -0.02 2.46 16
29 C 0.20 6.24 10.88 85.06 0.93 7.17 16
30 N -0.52 -15.15 9.77 -186.79 -1.82 -16.98 16
31 H 0.05 1.08 8.01 -2.39 -0.02 1.06 16
32 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16
33 H 0.09 1.06 8.14 -2.39 -0.02 1.05 16
34 H 0.09 0.94 8.14 -2.38 -0.02 0.92 16
35 H 0.05 0.81 8.14 -2.39 -0.02 0.80 16
36 H 0.05 1.00 8.01 -2.39 -0.02 0.98 16
37 H 0.05 0.87 8.04 -2.39 -0.02 0.85 16
38 H 0.06 0.88 8.03 -2.38 -0.02 0.86 16
39 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16
40 H 0.21 3.24 4.37 -2.91 -0.01 3.23 16
41 H 0.14 0.92 8.14 -2.39 -0.02 0.90 16
42 H 0.09 1.30 6.60 -2.39 -0.02 1.28 16
43 H 0.03 1.22 7.69 -2.39 -0.02 1.20 16
44 H 0.10 2.17 8.14 -2.38 -0.02 2.15 16
45 H 0.04 1.89 5.39 -2.39 -0.01 1.88 16
46 H 0.04 1.63 7.70 -2.39 -0.02 1.61 16
47 H 0.26 16.20 8.31 -92.71 -0.77 15.43 16
48 H 0.03 1.72 6.44 -2.39 -0.02 1.71 16
49 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16
50 H 0.17 5.63 7.76 -2.91 -0.02 5.61 16
Total: -1.00 -87.46 388.37 2.44 -85.02
By element:
Atomic # 1 Polarization: 10.75 SS G_CDS: 0.92 Total: 11.67 kcal
Atomic # 6 Polarization: 19.93 SS G_CDS: 7.84 Total: 27.76 kcal
Atomic # 7 Polarization: -137.40 SS G_CDS: -7.99 Total: -145.39 kcal
Atomic # 8 Polarization: -27.55 SS G_CDS: -0.06 Total: -27.62 kcal
Atomic # 14 Polarization: 46.82 SS G_CDS: 1.74 Total: 48.55 kcal
Total: -87.46 2.44 -85.02 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001084869627.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 148.425 kcal
(2) G-P(sol) polarization free energy of solvation -87.462 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.964 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.438 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.023 kcal
(6) G-S(sol) free energy of system = (1) + (5) 63.402 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.14 seconds