Wall clock time and date at job start Wed Apr 1 2020 03:16:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31919 * 119.04020 * 2 1 4 4 C 1.32170 * 121.03455 * 180.02562 * 3 2 1 5 5 C 1.38810 * 119.14815 * 359.97438 * 4 3 2 6 6 C 1.39495 * 118.25925 * 0.02564 * 5 4 3 7 7 C 1.48455 * 120.54609 * 180.02562 * 6 5 4 8 8 O 1.21476 * 120.00409 * 359.97250 * 7 6 5 9 9 N 1.34779 * 119.99807 * 179.97438 * 7 6 5 10 10 C 1.47168 * 125.66151 * 0.02562 * 9 7 6 11 11 C 1.53704 * 107.10880 * 181.47245 * 10 9 7 12 12 C 1.54508 * 103.64941 * 21.54286 * 11 10 9 13 13 C 1.47483 * 125.66006 * 179.71493 * 9 7 6 14 14 H 1.09001 * 110.35675 * 274.87129 * 13 9 7 15 15 C 1.52999 * 110.35626 * 37.15902 * 13 9 7 16 16 C 1.52283 * 110.63256 * 263.43077 * 11 10 9 17 17 C 1.53316 * 109.41767 * 296.23172 * 16 11 10 18 18 N 1.46925 * 108.70903 * 306.48968 * 17 16 11 19 19 C 1.36934 * 120.56134 * 234.21528 * 18 17 16 20 20 H 1.08008 * 119.99521 * 152.47261 * 19 18 17 21 21 C 1.38811 * 120.00564 * 332.47144 * 19 18 17 22 22 N 1.31610 * 120.00174 * 159.34447 * 21 19 18 23 23 Si 1.86801 * 119.99742 * 339.34534 * 21 19 18 24 24 H 1.48495 * 109.47189 * 93.20012 * 23 21 19 25 25 H 1.48500 * 109.47149 * 213.20447 * 23 21 19 26 26 H 1.48504 * 109.47083 * 333.20299 * 23 21 19 27 27 C 1.46931 * 118.87003 * 54.23788 * 18 17 16 28 28 C 1.52273 * 110.62550 * 139.66323 * 11 10 9 29 29 N 1.31549 * 119.04188 * 180.02562 * 2 1 3 30 30 H 1.09002 * 109.47293 * 90.00388 * 1 2 3 31 31 H 1.08997 * 109.46867 * 209.99758 * 1 2 3 32 32 H 1.09000 * 109.46990 * 330.00024 * 1 2 3 33 33 H 1.08002 * 120.42953 * 179.72897 * 4 3 2 34 34 H 1.08000 * 120.86972 * 179.97438 * 5 4 3 35 35 H 1.08996 * 109.91381 * 300.83559 * 10 9 7 36 36 H 1.08997 * 109.91203 * 61.91881 * 10 9 7 37 37 H 1.08999 * 111.01225 * 83.24052 * 12 11 10 38 38 H 1.08996 * 111.01453 * 207.07889 * 12 11 10 39 39 H 1.09001 * 109.46686 * 58.54770 * 15 13 9 40 40 H 1.09004 * 109.47324 * 178.54310 * 15 13 9 41 41 H 1.09002 * 109.47348 * 298.54833 * 15 13 9 42 42 H 1.08997 * 109.47516 * 56.21291 * 16 11 10 43 43 H 1.08992 * 109.47634 * 176.24598 * 16 11 10 44 44 H 1.09000 * 109.58982 * 186.72616 * 17 16 11 45 45 H 1.08996 * 109.60087 * 66.26324 * 17 16 11 46 46 H 0.97010 * 119.99713 * 180.02562 * 22 21 19 47 47 H 1.09008 * 109.59656 * 185.98880 * 27 18 17 48 48 H 1.08999 * 109.59855 * 65.52280 * 27 18 17 49 49 H 1.08999 * 109.47898 * 183.74533 * 28 11 10 50 50 H 1.09006 * 109.47877 * 303.77251 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1473 1.1533 0.0000 4 6 3.4682 1.1993 -0.0005 5 6 4.1861 0.0113 -0.0005 6 6 3.4761 -1.1894 -0.0005 7 6 4.1925 -2.4897 0.0001 8 8 5.4070 -2.5140 0.0000 9 7 3.4954 -3.6432 0.0006 10 6 2.0283 -3.7590 0.0001 11 6 1.6931 -5.2586 0.0387 12 6 2.9752 -5.9041 0.6103 13 6 4.0763 -4.9988 -0.0048 14 1 4.3010 -5.3110 -1.0247 15 6 5.3403 -5.0396 0.8562 16 6 1.4204 -5.7838 -1.3644 17 6 0.1771 -5.0916 -1.9350 18 7 -0.9303 -5.2518 -0.9828 19 6 -2.1239 -5.7877 -1.3867 20 1 -2.7502 -6.3077 -0.6768 21 6 -2.5291 -5.6627 -2.7085 22 7 -3.4295 -6.4863 -3.2015 23 14 -1.7961 -4.3256 -3.7876 24 1 -0.6297 -4.8706 -4.5276 25 1 -2.8194 -3.8535 -4.7546 26 1 -1.3565 -3.1896 -2.9381 27 6 -0.7353 -4.8268 0.4101 28 6 0.5138 -5.5209 0.9656 29 7 2.1456 -1.1501 -0.0005 30 1 -0.3634 -0.0001 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5138 33 1 3.9825 2.1490 -0.0049 34 1 5.2661 0.0164 -0.0013 35 1 1.6165 -3.2640 0.8795 36 1 1.6206 -3.3079 -0.9045 37 1 2.9862 -5.8538 1.6991 38 1 3.0807 -6.9334 0.2677 39 1 5.0958 -4.7389 1.8750 40 1 5.7428 -6.0526 0.8631 41 1 6.0829 -4.3564 0.4440 42 1 2.2782 -5.5750 -2.0037 43 1 1.2508 -6.8596 -1.3232 44 1 -0.0908 -5.5486 -2.8876 45 1 0.3834 -4.0313 -2.0809 46 1 -3.7124 -6.3991 -4.1253 47 1 -1.6049 -5.1091 1.0037 48 1 -0.5998 -3.7459 0.4470 49 1 0.3345 -6.5940 1.0309 50 1 0.7369 -5.1284 1.9577 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086957830.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:16:02 Heat of formation + Delta-G solvation = 51.357447 kcal Electronic energy + Delta-G solvation = -32223.064233 eV Core-core repulsion = 28251.474620 eV Total energy + Delta-G solvation = -3971.589613 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.55307 -40.45105 -38.66645 -36.27221 -34.28486 -33.44559 -33.16921 -31.71116 -31.12123 -30.52161 -28.67094 -27.52298 -26.30443 -25.30948 -24.14646 -23.43651 -22.89483 -21.95394 -20.87884 -19.77550 -18.52485 -17.99977 -17.18040 -16.79867 -16.26697 -15.83480 -15.61013 -15.39052 -15.12748 -14.78545 -14.34599 -14.18296 -13.84402 -13.79289 -13.66802 -13.50075 -13.23984 -12.89944 -12.71282 -12.56094 -12.46562 -12.28216 -12.09402 -11.94359 -11.82174 -11.69856 -11.27915 -11.21956 -11.04001 -10.94633 -10.81600 -10.57485 -10.47571 -10.14422 -10.08640 -9.82105 -9.75409 -9.60062 -9.42568 -9.31786 -8.67392 -8.59044 -6.95426 -5.95296 -3.30333 0.27998 0.67346 2.58540 2.69247 3.31096 3.47599 3.49791 3.57117 3.57972 3.77325 4.16543 4.52422 4.54327 4.58985 4.68901 4.74800 4.85568 4.95914 5.15631 5.17284 5.21087 5.24935 5.31959 5.40423 5.47996 5.51760 5.57447 5.62965 5.72659 5.77070 5.84766 5.86043 5.95300 5.99046 6.05514 6.11180 6.12608 6.13419 6.20433 6.34774 6.43439 6.45142 6.51444 6.62143 6.65930 6.68004 6.69789 6.95058 7.38239 7.71948 7.95967 7.96849 8.32981 8.94776 9.72568 10.10775 11.20872 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.010425 B = 0.004662 C = 0.003631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2685.229827 B = 6005.098754 C = 7709.087064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.320 3.680 3 N -0.508 5.508 4 C 0.151 3.849 5 C -0.182 4.182 6 C 0.139 3.861 7 C 0.582 3.418 8 O -0.532 6.532 9 N -0.587 5.587 10 C 0.123 3.877 11 C -0.063 4.063 12 C -0.122 4.122 13 C 0.132 3.868 14 H 0.079 0.921 15 C -0.164 4.164 16 C -0.120 4.120 17 C 0.127 3.873 18 N -0.603 5.603 19 C -0.257 4.257 20 H 0.085 0.915 21 C 0.024 3.976 22 N -0.909 5.909 23 Si 0.880 3.120 24 H -0.291 1.291 25 H -0.304 1.304 26 H -0.269 1.269 27 C 0.148 3.852 28 C -0.118 4.118 29 N -0.485 5.485 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.087 0.913 33 H 0.176 0.824 34 H 0.159 0.841 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.075 0.925 38 H 0.084 0.916 39 H 0.053 0.947 40 H 0.062 0.938 41 H 0.084 0.916 42 H 0.052 0.948 43 H 0.070 0.930 44 H 0.071 0.929 45 H 0.025 0.975 46 H 0.262 0.738 47 H 0.063 0.937 48 H 0.025 0.975 49 H 0.068 0.932 50 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.365 10.094 9.088 20.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 N -0.223 5.223 4 C -0.016 4.016 5 C -0.205 4.205 6 C -0.009 4.009 7 C 0.368 3.632 8 O -0.409 6.409 9 N -0.319 5.319 10 C 0.001 3.999 11 C -0.064 4.064 12 C -0.160 4.160 13 C 0.030 3.970 14 H 0.097 0.903 15 C -0.221 4.221 16 C -0.160 4.160 17 C 0.001 3.999 18 N -0.327 5.327 19 C -0.386 4.386 20 H 0.103 0.897 21 C -0.174 4.174 22 N -0.552 5.552 23 Si 0.710 3.290 24 H -0.219 1.219 25 H -0.233 1.233 26 H -0.194 1.194 27 C 0.022 3.978 28 C -0.157 4.157 29 N -0.202 5.202 30 H 0.109 0.891 31 H 0.111 0.889 32 H 0.106 0.894 33 H 0.193 0.807 34 H 0.176 0.824 35 H 0.096 0.904 36 H 0.101 0.899 37 H 0.094 0.906 38 H 0.103 0.897 39 H 0.072 0.928 40 H 0.081 0.919 41 H 0.103 0.897 42 H 0.070 0.930 43 H 0.088 0.912 44 H 0.090 0.910 45 H 0.043 0.957 46 H 0.072 0.928 47 H 0.081 0.919 48 H 0.043 0.957 49 H 0.086 0.914 50 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 14.917 10.044 8.960 20.092 hybrid contribution 1.283 0.766 -0.871 1.730 sum 16.200 10.810 8.089 21.089 Atomic orbital electron populations 1.20665 0.84875 1.04634 1.04599 1.23413 0.98518 0.82856 0.89871 1.68234 1.10369 1.30574 1.13085 1.23338 0.89509 0.98540 0.90239 1.22907 1.03680 0.92987 1.00942 1.21628 0.90050 0.94579 0.94683 1.17410 0.85953 0.82023 0.77845 1.90716 1.12400 1.86289 1.51525 1.48532 1.08879 1.05003 1.69486 1.22371 0.77687 0.96189 1.03630 1.21062 0.94761 0.93450 0.97082 1.23003 0.93528 0.98902 1.00529 1.22108 0.94134 0.80857 0.99891 0.90269 1.22177 0.97732 1.02555 0.99685 1.21937 0.98651 1.01293 0.94073 1.21363 0.87478 0.96905 0.94148 1.44307 1.10454 1.72807 1.05102 1.18920 0.95890 1.28244 0.95502 0.89727 1.25257 0.96803 0.98279 0.97110 1.69835 1.34238 1.36402 1.14745 0.86998 0.77101 0.84553 0.80309 1.21870 1.23265 1.19437 1.20966 0.95185 0.95533 0.86140 1.21901 0.95386 1.01926 0.96492 1.68551 1.08524 1.30593 1.12538 0.89135 0.88915 0.89409 0.80728 0.82372 0.90383 0.89940 0.90588 0.89705 0.92770 0.91938 0.89710 0.92962 0.91162 0.91049 0.95687 0.92826 0.91875 0.95721 0.91363 0.92584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.97 10.31 36.00 0.37 -0.60 16 2 C 0.32 4.10 7.64 -157.30 -1.20 2.90 16 3 N -0.51 -6.03 10.32 -10.73 -0.11 -6.14 16 4 C 0.15 1.45 11.31 -17.19 -0.19 1.25 16 5 C -0.18 -1.96 9.72 -38.90 -0.38 -2.34 16 6 C 0.14 1.87 6.75 -82.64 -0.56 1.31 16 7 C 0.58 8.48 7.64 -12.05 -0.09 8.39 16 8 O -0.53 -8.33 14.08 5.39 0.08 -8.25 16 9 N -0.59 -8.25 3.25 -163.94 -0.53 -8.78 16 10 C 0.12 1.79 3.60 -3.31 -0.01 1.78 16 11 C -0.06 -0.90 0.53 -154.09 -0.08 -0.98 16 12 C -0.12 -1.44 5.42 -24.75 -0.13 -1.57 16 13 C 0.13 1.65 3.45 -66.20 -0.23 1.42 16 14 H 0.08 1.00 7.74 -51.93 -0.40 0.60 16 15 C -0.16 -1.88 8.71 37.16 0.32 -1.55 16 16 C -0.12 -2.01 4.78 -26.93 -0.13 -2.14 16 17 C 0.13 2.64 3.91 -3.65 -0.01 2.63 16 18 N -0.60 -13.50 2.76 -172.17 -0.47 -13.97 16 19 C -0.26 -6.93 10.03 -15.06 -0.15 -7.08 16 20 H 0.09 2.44 8.06 -52.48 -0.42 2.02 16 21 C 0.02 0.69 5.23 -17.43 -0.09 0.59 16 22 N -0.91 -27.46 13.97 55.49 0.78 -26.68 16 23 Si 0.88 22.05 24.35 -169.99 -4.14 17.91 16 24 H -0.29 -7.13 6.63 56.52 0.37 -6.75 16 25 H -0.30 -7.82 7.11 56.52 0.40 -7.42 16 26 H -0.27 -6.55 6.64 56.52 0.38 -6.17 16 27 C 0.15 2.68 6.24 -3.65 -0.02 2.65 16 28 C -0.12 -1.75 4.70 -26.94 -0.13 -1.87 16 29 N -0.48 -6.75 6.96 -7.32 -0.05 -6.80 16 30 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 31 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.18 0.97 8.06 -52.49 -0.42 0.55 16 34 H 0.16 1.44 7.74 -52.49 -0.41 1.04 16 35 H 0.08 1.14 6.87 -51.93 -0.36 0.78 16 36 H 0.08 1.38 5.53 -51.93 -0.29 1.09 16 37 H 0.08 0.84 7.93 -51.93 -0.41 0.43 16 38 H 0.08 0.93 8.01 -51.93 -0.42 0.51 16 39 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.08 1.12 5.89 -51.93 -0.31 0.81 16 42 H 0.05 0.81 7.47 -51.93 -0.39 0.42 16 43 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 44 H 0.07 1.68 4.46 -51.93 -0.23 1.44 16 45 H 0.03 0.53 5.50 -51.93 -0.29 0.25 16 46 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 47 H 0.06 1.15 7.93 -51.92 -0.41 0.74 16 48 H 0.02 0.43 7.47 -51.93 -0.39 0.05 16 49 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 50 H 0.06 0.72 8.10 -51.93 -0.42 0.30 16 LS Contribution 378.08 15.07 5.70 5.70 Total: -1.00 -31.82 378.08 -9.18 -41.01 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -7.70 Total: 1.22 kcal Atomic # 6 Polarization: 7.51 SS G_CDS: -2.72 Total: 4.79 kcal Atomic # 7 Polarization: -61.98 SS G_CDS: -0.39 Total: -62.38 kcal Atomic # 8 Polarization: -8.33 SS G_CDS: 0.08 Total: -8.25 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.14 Total: 17.91 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -31.82 -9.18 -41.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086957830.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.364 kcal (2) G-P(sol) polarization free energy of solvation -31.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds