Wall clock time and date at job start Wed Apr 1 2020 03:17:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.31916 * 119.04162 * 2 1 4 4 C 1.32180 * 121.03304 * 180.02562 * 3 2 1 5 5 C 1.38804 * 119.14615 * 0.02562 * 4 3 2 6 6 C 1.39490 * 118.26263 * 359.97438 * 5 4 3 7 7 C 1.48462 * 120.54686 * 180.02562 * 6 5 4 8 8 O 1.21477 * 119.99871 * 0.02562 * 7 6 5 9 9 N 1.34770 * 120.00145 * 179.97438 * 7 6 5 10 10 C 1.46496 * 120.00203 * 180.02562 * 9 7 6 11 11 H 1.09001 * 112.86849 * 26.76654 * 10 9 7 12 12 C 1.54155 * 113.63967 * 255.49825 * 10 9 7 13 13 H 1.09004 * 114.24600 * 26.68334 * 12 10 9 14 14 C 1.53066 * 111.68913 * 157.46336 * 12 10 9 15 15 C 1.51283 * 110.33902 * 145.16272 * 14 12 10 16 16 C 1.52938 * 109.36138 * 296.35778 * 15 14 12 17 17 N 1.45893 * 109.88827 * 56.84702 * 16 15 14 18 18 C 1.36943 * 118.48213 * 140.64133 * 17 16 15 19 19 H 1.07998 * 119.99439 * 206.36318 * 18 17 16 20 20 C 1.38810 * 119.99795 * 26.35513 * 18 17 16 21 21 N 1.31612 * 120.00475 * 14.01051 * 20 18 17 22 22 Si 1.86801 * 119.99595 * 194.00830 * 20 18 17 23 23 H 1.48498 * 109.47395 * 90.00085 * 22 20 18 24 24 H 1.48501 * 109.47103 * 210.00091 * 22 20 18 25 25 H 1.48504 * 109.47175 * 330.00128 * 22 20 18 26 26 C 1.45083 * 123.03368 * 320.65626 * 17 16 15 27 27 H 1.09001 * 112.25915 * 157.09871 * 26 17 16 28 28 C 1.53393 * 113.74538 * 286.73579 * 26 17 16 29 29 C 1.52995 * 113.68519 * 28.73476 * 28 26 17 30 30 C 1.52997 * 113.68621 * 257.59371 * 28 26 17 31 31 N 1.31558 * 119.04385 * 180.30575 * 2 1 3 32 32 H 1.08998 * 109.47519 * 90.00103 * 1 2 3 33 33 H 1.08997 * 109.47042 * 209.99742 * 1 2 3 34 34 H 1.09002 * 109.47362 * 329.99777 * 1 2 3 35 35 H 1.07999 * 120.42210 * 179.97438 * 4 3 2 36 36 H 1.08003 * 120.86442 * 180.02562 * 5 4 3 37 37 H 0.97009 * 120.00122 * 0.02562 * 9 7 6 38 38 H 1.08993 * 109.47951 * 266.38343 * 14 12 10 39 39 H 1.09005 * 109.47720 * 26.42325 * 14 12 10 40 40 H 1.08999 * 109.75078 * 176.13883 * 15 14 12 41 41 H 1.09001 * 109.02515 * 56.13024 * 15 14 12 42 42 H 1.09000 * 109.40072 * 296.72242 * 16 15 14 43 43 H 1.08994 * 109.40078 * 176.97501 * 16 15 14 44 44 H 0.97003 * 120.00201 * 180.02562 * 21 20 18 45 45 H 1.08995 * 109.47078 * 145.78638 * 29 28 26 46 46 H 1.09004 * 109.46535 * 265.77820 * 29 28 26 47 47 H 1.08999 * 109.47527 * 25.77772 * 29 28 26 48 48 H 1.09001 * 109.47719 * 303.46650 * 30 28 26 49 49 H 1.09005 * 109.47155 * 63.47174 * 30 28 26 50 50 H 1.08999 * 109.47258 * 183.46488 * 30 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1473 1.1533 0.0000 4 6 3.4683 1.1992 -0.0005 5 6 4.1861 0.0112 -0.0016 6 6 3.4760 -1.1895 -0.0015 7 6 4.1924 -2.4898 -0.0021 8 8 5.4070 -2.5141 -0.0021 9 7 3.4954 -3.6432 -0.0015 10 6 4.2023 -4.9263 -0.0015 11 1 5.1923 -4.8645 0.4504 12 6 4.1903 -5.6387 -1.3685 13 1 4.0944 -4.9677 -2.2222 14 6 5.3446 -6.6358 -1.4970 15 6 4.9123 -7.8394 -2.3051 16 6 3.7966 -8.5752 -1.5615 17 7 2.6857 -7.6645 -1.3064 18 6 1.4082 -8.1402 -1.4368 19 1 0.6021 -7.4633 -1.6784 20 6 1.1495 -9.4923 -1.2587 21 7 2.0553 -10.2679 -0.7019 22 14 -0.4844 -10.2110 -1.8095 23 1 -0.3734 -10.6717 -3.2168 24 1 -0.8381 -11.3608 -0.9387 25 1 -1.5407 -9.1719 -1.7107 26 6 2.8719 -6.2782 -0.9212 27 1 2.0026 -5.6640 -1.1564 28 6 3.3543 -6.0981 0.5237 29 6 4.1847 -7.2724 1.0454 30 6 2.2492 -5.6713 1.4920 31 7 2.1456 -1.1501 -0.0061 32 1 -0.3634 0.0000 -1.0276 33 1 -0.3633 -0.8900 0.5138 34 1 -0.3634 0.8900 0.5139 35 1 3.9825 2.1490 -0.0009 36 1 5.2661 0.0163 -0.0016 37 1 2.5255 -3.6239 -0.0011 38 1 6.1934 -6.1492 -1.9774 39 1 5.6372 -6.9827 -0.5059 40 1 5.7593 -8.5102 -2.4487 41 1 4.5446 -7.5031 -3.2745 42 1 4.1807 -8.9522 -0.6136 43 1 3.4477 -9.4112 -2.1675 44 1 1.8746 -11.2129 -0.5778 45 1 4.9529 -6.9012 1.7237 46 1 3.5358 -7.9682 1.5773 47 1 4.6569 -7.7844 0.2069 48 1 1.7889 -4.7500 1.1349 49 1 1.4945 -6.4557 1.5505 50 1 2.6768 -5.5043 2.4806 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087317029.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:17:44 Heat of formation + Delta-G solvation = 76.946328 kcal Electronic energy + Delta-G solvation = -31529.496497 eV Core-core repulsion = 27559.016500 eV Total energy + Delta-G solvation = -3970.479996 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.55427 -40.85218 -38.88906 -35.42261 -34.28375 -33.50935 -33.17203 -32.57568 -30.36154 -29.88077 -28.79531 -26.87863 -26.30275 -25.32961 -24.39054 -23.18516 -22.45007 -21.31458 -20.71795 -19.33489 -18.46080 -17.92359 -17.21016 -16.80905 -15.87660 -15.78930 -15.73617 -15.25837 -14.85420 -14.67295 -14.46235 -13.99079 -13.80303 -13.71152 -13.62470 -13.10000 -12.89927 -12.69032 -12.65862 -12.50887 -12.16108 -12.09555 -11.62872 -11.33415 -11.27877 -11.19777 -11.09386 -11.01376 -10.84255 -10.77210 -10.53079 -10.44791 -10.18995 -9.99812 -9.82473 -9.75494 -9.58652 -9.50862 -9.35838 -9.08431 -8.65920 -8.33106 -6.63699 -5.77053 -3.21219 0.23743 0.59665 2.62080 2.91090 3.36803 3.44455 3.44595 3.53405 3.53898 3.71517 4.33562 4.48983 4.57439 4.67938 4.95379 5.05420 5.09420 5.13482 5.27122 5.31636 5.37061 5.46787 5.49620 5.60487 5.62970 5.71639 5.83952 5.93700 5.97905 6.01706 6.12793 6.20051 6.26137 6.30764 6.44294 6.46421 6.50948 6.58016 6.60597 6.62977 6.75820 6.81080 6.83699 6.97852 7.11830 7.21117 7.46100 7.50439 7.70668 7.75551 7.85092 8.11618 8.46395 9.25939 9.90944 10.34437 11.28857 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.014028 B = 0.003221 C = 0.002821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1995.479011 B = 8689.583738 C = 9921.555885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.317 3.683 3 N -0.509 5.509 4 C 0.152 3.848 5 C -0.180 4.180 6 C 0.141 3.859 7 C 0.566 3.434 8 O -0.528 6.528 9 N -0.678 5.678 10 C 0.119 3.881 11 H 0.096 0.904 12 C -0.126 4.126 13 H 0.069 0.931 14 C -0.106 4.106 15 C -0.145 4.145 16 C 0.177 3.823 17 N -0.570 5.570 18 C -0.260 4.260 19 H 0.065 0.935 20 C 0.007 3.993 21 N -0.902 5.902 22 Si 0.900 3.100 23 H -0.289 1.289 24 H -0.292 1.292 25 H -0.280 1.280 26 C 0.187 3.813 27 H 0.071 0.929 28 C -0.110 4.110 29 C -0.135 4.135 30 C -0.127 4.127 31 N -0.494 5.494 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.177 0.823 36 H 0.161 0.839 37 H 0.412 0.588 38 H 0.048 0.952 39 H 0.077 0.923 40 H 0.054 0.946 41 H 0.051 0.949 42 H 0.041 0.959 43 H 0.071 0.929 44 H 0.253 0.747 45 H 0.032 0.968 46 H 0.062 0.938 47 H 0.097 0.903 48 H 0.042 0.958 49 H 0.066 0.934 50 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.816 18.177 2.280 18.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.050 3.950 3 N -0.224 5.224 4 C -0.015 4.015 5 C -0.203 4.203 6 C -0.007 4.007 7 C 0.349 3.651 8 O -0.404 6.404 9 N -0.328 5.328 10 C 0.014 3.986 11 H 0.114 0.886 12 C -0.148 4.148 13 H 0.087 0.913 14 C -0.144 4.144 15 C -0.184 4.184 16 C 0.052 3.948 17 N -0.288 5.288 18 C -0.390 4.390 19 H 0.082 0.918 20 C -0.191 4.191 21 N -0.547 5.547 22 Si 0.731 3.269 23 H -0.216 1.216 24 H -0.218 1.218 25 H -0.206 1.206 26 C 0.077 3.923 27 H 0.089 0.911 28 C -0.115 4.115 29 C -0.191 4.191 30 C -0.184 4.184 31 N -0.211 5.211 32 H 0.107 0.893 33 H 0.108 0.892 34 H 0.106 0.894 35 H 0.194 0.806 36 H 0.178 0.822 37 H 0.251 0.749 38 H 0.066 0.934 39 H 0.095 0.905 40 H 0.072 0.928 41 H 0.069 0.931 42 H 0.059 0.941 43 H 0.089 0.911 44 H 0.063 0.937 45 H 0.051 0.949 46 H 0.081 0.919 47 H 0.115 0.885 48 H 0.061 0.939 49 H 0.085 0.915 50 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 2.679 17.872 2.300 18.217 hybrid contribution -0.370 -0.247 -0.242 0.507 sum 2.309 17.625 2.058 17.894 Atomic orbital electron populations 1.20624 0.85090 1.04536 1.04284 1.23298 0.98390 0.82910 0.90401 1.68226 1.10456 1.30439 1.13247 1.23356 0.89442 0.98641 0.90053 1.22967 1.03934 0.92979 1.00411 1.21757 0.89833 0.94966 0.94168 1.17779 0.86620 0.82957 0.77695 1.90786 1.12630 1.86824 1.50144 1.45686 1.11187 1.04697 1.71199 1.22478 0.96500 0.81161 0.98472 0.88558 1.23197 0.98475 0.97173 0.95918 0.91276 1.21208 0.95811 0.95654 1.01691 1.21765 0.99962 0.96972 0.99671 1.20703 0.85345 0.91333 0.97428 1.43241 1.03143 1.05236 1.77148 1.19243 0.85772 0.92342 1.41610 0.91766 1.24973 0.97425 0.97583 0.99140 1.70041 1.34385 1.05198 1.45039 0.86327 0.83797 0.78692 0.78129 1.21582 1.21840 1.20555 1.21284 0.93473 0.87315 0.90266 0.91087 1.23006 0.95640 0.93363 0.99448 1.22051 0.98563 0.96755 1.01778 1.21586 0.98564 1.00395 0.97862 1.68224 1.08752 1.31185 1.12985 0.89277 0.89157 0.89434 0.80620 0.82159 0.74950 0.93368 0.90496 0.92773 0.93058 0.94124 0.91057 0.93719 0.94890 0.91915 0.88498 0.93859 0.91543 0.93950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.67 10.31 36.00 0.37 -0.30 16 2 C 0.32 3.46 7.64 -157.29 -1.20 2.26 16 3 N -0.51 -5.31 10.32 -10.73 -0.11 -5.42 16 4 C 0.15 1.32 11.31 -17.19 -0.19 1.12 16 5 C -0.18 -1.84 9.72 -38.91 -0.38 -2.22 16 6 C 0.14 1.81 6.79 -82.64 -0.56 1.24 16 7 C 0.57 8.47 7.83 -12.05 -0.09 8.38 16 8 O -0.53 -9.07 16.06 5.39 0.09 -8.98 16 9 N -0.68 -10.08 4.76 -53.53 -0.26 -10.33 16 10 C 0.12 1.95 3.30 -66.88 -0.22 1.72 16 11 H 0.10 1.65 7.42 -51.93 -0.39 1.26 16 12 C -0.13 -2.22 4.15 -89.87 -0.37 -2.59 16 13 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 14 C -0.11 -1.81 5.12 -27.56 -0.14 -1.95 16 15 C -0.14 -2.70 5.96 -27.63 -0.16 -2.86 16 16 C 0.18 3.99 3.98 -4.40 -0.02 3.97 16 17 N -0.57 -13.22 2.64 -166.87 -0.44 -13.66 16 18 C -0.26 -6.74 9.48 -15.06 -0.14 -6.88 16 19 H 0.06 1.66 7.83 -52.49 -0.41 1.25 16 20 C 0.01 0.20 4.91 -17.43 -0.09 0.11 16 21 N -0.90 -24.76 10.91 55.49 0.61 -24.16 16 22 Si 0.90 21.15 29.58 -169.99 -5.03 16.12 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 26 C 0.19 3.68 3.43 -68.39 -0.23 3.45 16 27 H 0.07 1.42 7.95 -51.93 -0.41 1.00 16 28 C -0.11 -1.95 1.33 -153.85 -0.20 -2.16 16 29 C -0.13 -2.50 7.28 37.16 0.27 -2.23 16 30 C -0.13 -2.10 8.91 37.16 0.33 -1.76 16 31 N -0.49 -6.13 9.60 -7.32 -0.07 -6.20 16 32 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.18 0.82 8.06 -52.49 -0.42 0.40 16 36 H 0.16 1.43 7.74 -52.48 -0.41 1.03 16 37 H 0.41 5.85 6.17 -40.82 -0.25 5.60 16 38 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.08 1.31 4.69 -51.93 -0.24 1.06 16 40 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.04 0.97 5.53 -51.93 -0.29 0.69 16 43 H 0.07 1.83 6.47 -51.93 -0.34 1.49 16 44 H 0.25 6.81 8.31 -40.82 -0.34 6.47 16 45 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 46 H 0.06 1.30 8.05 -51.93 -0.42 0.88 16 47 H 0.10 1.89 1.86 -51.93 -0.10 1.79 16 48 H 0.04 0.64 5.96 -51.93 -0.31 0.33 16 49 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 50 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 384.08 15.07 5.79 5.79 Total: -1.00 -29.68 384.08 -9.81 -39.49 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: -7.34 Total: 8.05 kcal Atomic # 6 Polarization: 2.33 SS G_CDS: -3.04 Total: -0.71 kcal Atomic # 7 Polarization: -59.50 SS G_CDS: -0.27 Total: -59.77 kcal Atomic # 8 Polarization: -9.07 SS G_CDS: 0.09 Total: -8.98 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.03 Total: 16.12 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -29.68 -9.81 -39.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087317029.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.440 kcal (2) G-P(sol) polarization free energy of solvation -29.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds