Wall clock time and date at job start Wed Apr 1 2020 03:17:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.31916 * 119.04162 * 2 1 4 4 C 1.32180 * 121.03304 * 180.02562 * 3 2 1 5 5 C 1.38804 * 119.14615 * 0.02562 * 4 3 2 6 6 C 1.39490 * 118.26263 * 359.97438 * 5 4 3 7 7 C 1.48462 * 120.54686 * 180.02562 * 6 5 4 8 8 O 1.21477 * 119.99871 * 0.02562 * 7 6 5 9 9 N 1.34770 * 120.00145 * 179.97438 * 7 6 5 10 10 C 1.46496 * 120.00203 * 180.02562 * 9 7 6 11 11 H 1.09001 * 112.86849 * 26.76654 * 10 9 7 12 12 C 1.54155 * 113.63967 * 255.49825 * 10 9 7 13 13 H 1.09004 * 114.24600 * 26.68334 * 12 10 9 14 14 C 1.53066 * 111.68913 * 157.46336 * 12 10 9 15 15 C 1.51283 * 110.33902 * 145.16272 * 14 12 10 16 16 C 1.52938 * 109.36138 * 296.35778 * 15 14 12 17 17 N 1.45893 * 109.88827 * 56.84702 * 16 15 14 18 18 C 1.36943 * 118.48213 * 140.64133 * 17 16 15 19 19 H 1.07998 * 119.99439 * 206.36318 * 18 17 16 20 20 C 1.38810 * 119.99795 * 26.35513 * 18 17 16 21 21 N 1.31612 * 120.00475 * 14.01051 * 20 18 17 22 22 Si 1.86801 * 119.99595 * 194.00830 * 20 18 17 23 23 H 1.48498 * 109.47395 * 90.00085 * 22 20 18 24 24 H 1.48501 * 109.47103 * 210.00091 * 22 20 18 25 25 H 1.48504 * 109.47175 * 330.00128 * 22 20 18 26 26 C 1.45083 * 123.03368 * 320.65626 * 17 16 15 27 27 H 1.09001 * 112.25915 * 157.09871 * 26 17 16 28 28 C 1.53393 * 113.74538 * 286.73579 * 26 17 16 29 29 C 1.52995 * 113.68519 * 28.73476 * 28 26 17 30 30 C 1.52997 * 113.68621 * 257.59371 * 28 26 17 31 31 N 1.31558 * 119.04385 * 180.30575 * 2 1 3 32 32 H 1.08998 * 109.47519 * 90.00103 * 1 2 3 33 33 H 1.08997 * 109.47042 * 209.99742 * 1 2 3 34 34 H 1.09002 * 109.47362 * 329.99777 * 1 2 3 35 35 H 1.07999 * 120.42210 * 179.97438 * 4 3 2 36 36 H 1.08003 * 120.86442 * 180.02562 * 5 4 3 37 37 H 0.97009 * 120.00122 * 0.02562 * 9 7 6 38 38 H 1.08993 * 109.47951 * 266.38343 * 14 12 10 39 39 H 1.09005 * 109.47720 * 26.42325 * 14 12 10 40 40 H 1.08999 * 109.75078 * 176.13883 * 15 14 12 41 41 H 1.09001 * 109.02515 * 56.13024 * 15 14 12 42 42 H 1.09000 * 109.40072 * 296.72242 * 16 15 14 43 43 H 1.08994 * 109.40078 * 176.97501 * 16 15 14 44 44 H 0.97003 * 120.00201 * 180.02562 * 21 20 18 45 45 H 1.08995 * 109.47078 * 145.78638 * 29 28 26 46 46 H 1.09004 * 109.46535 * 265.77820 * 29 28 26 47 47 H 1.08999 * 109.47527 * 25.77772 * 29 28 26 48 48 H 1.09001 * 109.47719 * 303.46650 * 30 28 26 49 49 H 1.09005 * 109.47155 * 63.47174 * 30 28 26 50 50 H 1.08999 * 109.47258 * 183.46488 * 30 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1473 1.1533 0.0000 4 6 3.4683 1.1992 -0.0005 5 6 4.1861 0.0112 -0.0016 6 6 3.4760 -1.1895 -0.0015 7 6 4.1924 -2.4898 -0.0021 8 8 5.4070 -2.5141 -0.0021 9 7 3.4954 -3.6432 -0.0015 10 6 4.2023 -4.9263 -0.0015 11 1 5.1923 -4.8645 0.4504 12 6 4.1903 -5.6387 -1.3685 13 1 4.0944 -4.9677 -2.2222 14 6 5.3446 -6.6358 -1.4970 15 6 4.9123 -7.8394 -2.3051 16 6 3.7966 -8.5752 -1.5615 17 7 2.6857 -7.6645 -1.3064 18 6 1.4082 -8.1402 -1.4368 19 1 0.6021 -7.4633 -1.6784 20 6 1.1495 -9.4923 -1.2587 21 7 2.0553 -10.2679 -0.7019 22 14 -0.4844 -10.2110 -1.8095 23 1 -0.3734 -10.6717 -3.2168 24 1 -0.8381 -11.3608 -0.9387 25 1 -1.5407 -9.1719 -1.7107 26 6 2.8719 -6.2782 -0.9212 27 1 2.0026 -5.6640 -1.1564 28 6 3.3543 -6.0981 0.5237 29 6 4.1847 -7.2724 1.0454 30 6 2.2492 -5.6713 1.4920 31 7 2.1456 -1.1501 -0.0061 32 1 -0.3634 0.0000 -1.0276 33 1 -0.3633 -0.8900 0.5138 34 1 -0.3634 0.8900 0.5139 35 1 3.9825 2.1490 -0.0009 36 1 5.2661 0.0163 -0.0016 37 1 2.5255 -3.6239 -0.0011 38 1 6.1934 -6.1492 -1.9774 39 1 5.6372 -6.9827 -0.5059 40 1 5.7593 -8.5102 -2.4487 41 1 4.5446 -7.5031 -3.2745 42 1 4.1807 -8.9522 -0.6136 43 1 3.4477 -9.4112 -2.1675 44 1 1.8746 -11.2129 -0.5778 45 1 4.9529 -6.9012 1.7237 46 1 3.5358 -7.9682 1.5773 47 1 4.6569 -7.7844 0.2069 48 1 1.7889 -4.7500 1.1349 49 1 1.4945 -6.4557 1.5505 50 1 2.6768 -5.5043 2.4806 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087317029.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:17:43 Heat of formation + Delta-G solvation = 59.920380 kcal Electronic energy + Delta-G solvation = -31530.234797 eV Core-core repulsion = 27559.016500 eV Total energy + Delta-G solvation = -3971.218297 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.58655 -42.09031 -40.10626 -37.02662 -35.26758 -34.73494 -34.25877 -33.90247 -32.23660 -31.38755 -29.47638 -28.32619 -27.46187 -27.08588 -25.67679 -24.13876 -24.00993 -22.78113 -21.89325 -20.81351 -19.60856 -19.06570 -18.68216 -18.32461 -17.21721 -16.73329 -16.64784 -16.57736 -16.22905 -15.97438 -15.84773 -15.38153 -15.32394 -15.02708 -14.64514 -14.38866 -14.18782 -14.10933 -13.75845 -13.59430 -13.49683 -13.23387 -13.18078 -12.91762 -12.85380 -12.73061 -12.57651 -12.45359 -12.06657 -12.05055 -12.02560 -11.95520 -11.68065 -11.59645 -11.32360 -11.15551 -10.96957 -10.66934 -10.59403 -10.43031 -10.30577 -9.95811 -8.53120 -7.77815 -5.23335 -0.64387 -0.13692 1.47106 1.49472 1.56360 1.57402 1.80881 2.54555 2.68612 2.69883 3.01198 3.34119 3.46813 3.50547 3.66250 3.72260 3.76104 3.95501 3.98956 4.04235 4.27143 4.38871 4.39475 4.46144 4.46881 4.58502 4.67167 4.72358 4.72614 4.79531 4.83258 4.87626 4.96456 5.01025 5.01490 5.09160 5.13992 5.17009 5.23768 5.30774 5.33561 5.37743 5.48241 5.59183 5.63619 5.66956 5.74007 5.76213 6.01847 6.34854 6.46123 6.85952 6.97548 7.26737 8.03652 8.39446 9.24842 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.014028 B = 0.003221 C = 0.002821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1995.479011 B = 8689.583738 C = 9921.555885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.306 3.694 3 N -0.516 5.516 4 C 0.164 3.836 5 C -0.177 4.177 6 C 0.117 3.883 7 C 0.569 3.431 8 O -0.552 6.552 9 N -0.677 5.677 10 C 0.139 3.861 11 H 0.098 0.902 12 C -0.121 4.121 13 H 0.070 0.930 14 C -0.102 4.102 15 C -0.134 4.134 16 C 0.186 3.814 17 N -0.582 5.582 18 C -0.264 4.264 19 H 0.061 0.939 20 C -0.040 4.040 21 N -0.927 5.927 22 Si 0.956 3.044 23 H -0.290 1.290 24 H -0.297 1.297 25 H -0.272 1.272 26 C 0.173 3.827 27 H 0.065 0.935 28 C -0.107 4.107 29 C -0.129 4.129 30 C -0.121 4.121 31 N -0.512 5.512 32 H 0.098 0.902 33 H 0.091 0.909 34 H 0.101 0.899 35 H 0.219 0.781 36 H 0.173 0.827 37 H 0.415 0.585 38 H 0.071 0.929 39 H 0.080 0.920 40 H 0.074 0.926 41 H 0.046 0.954 42 H 0.025 0.975 43 H 0.033 0.967 44 H 0.247 0.753 45 H 0.056 0.944 46 H 0.032 0.968 47 H 0.088 0.912 48 H 0.059 0.941 49 H 0.040 0.960 50 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.326 21.099 2.289 21.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.039 3.961 3 N -0.231 5.231 4 C -0.004 4.004 5 C -0.199 4.199 6 C -0.030 4.030 7 C 0.354 3.646 8 O -0.429 6.429 9 N -0.327 5.327 10 C 0.033 3.967 11 H 0.116 0.884 12 C -0.142 4.142 13 H 0.088 0.912 14 C -0.140 4.140 15 C -0.173 4.173 16 C 0.061 3.939 17 N -0.300 5.300 18 C -0.395 4.395 19 H 0.079 0.921 20 C -0.236 4.236 21 N -0.572 5.572 22 Si 0.785 3.215 23 H -0.217 1.217 24 H -0.224 1.224 25 H -0.197 1.197 26 C 0.064 3.936 27 H 0.083 0.917 28 C -0.111 4.111 29 C -0.186 4.186 30 C -0.178 4.178 31 N -0.230 5.230 32 H 0.116 0.884 33 H 0.110 0.890 34 H 0.120 0.880 35 H 0.236 0.764 36 H 0.190 0.810 37 H 0.254 0.746 38 H 0.090 0.910 39 H 0.098 0.902 40 H 0.092 0.908 41 H 0.064 0.936 42 H 0.042 0.958 43 H 0.052 0.948 44 H 0.056 0.944 45 H 0.075 0.925 46 H 0.051 0.949 47 H 0.107 0.893 48 H 0.078 0.922 49 H 0.059 0.941 50 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.175 20.827 2.309 21.194 hybrid contribution -0.534 -1.047 -0.250 1.202 sum 2.641 19.780 2.059 20.061 Atomic orbital electron populations 1.20726 0.83322 1.05278 1.05056 1.23844 0.99597 0.82693 0.89990 1.68338 1.11349 1.30096 1.13344 1.24059 0.88870 0.99707 0.87761 1.23188 1.04599 0.92594 0.99562 1.21550 0.90388 0.94568 0.96479 1.18077 0.86404 0.83543 0.76603 1.90763 1.13644 1.87325 1.51215 1.45618 1.11270 1.04342 1.71423 1.22145 0.96166 0.81296 0.97050 0.88427 1.23153 0.97225 0.97127 0.96683 0.91179 1.21187 0.96205 0.94807 1.01761 1.21626 0.99065 0.97676 0.98924 1.20462 0.86203 0.90837 0.96404 1.43374 1.02396 1.06487 1.77786 1.19486 0.86973 0.92492 1.40536 0.92138 1.25576 1.00115 0.98044 0.99896 1.70185 1.35774 1.04860 1.46432 0.85442 0.80984 0.77797 0.77234 1.21743 1.22413 1.19718 1.21487 0.94606 0.85472 0.92008 0.91655 1.22857 0.96051 0.93900 0.98297 1.21958 0.98582 0.96431 1.01617 1.21516 0.97632 1.00188 0.98475 1.68185 1.08690 1.32161 1.13916 0.88382 0.89044 0.88043 0.76416 0.80965 0.74588 0.91033 0.90228 0.90758 0.93565 0.95775 0.94823 0.94413 0.92500 0.94905 0.89339 0.92201 0.94081 0.92588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.16 10.31 71.23 0.73 -0.43 16 2 C 0.31 6.09 7.64 138.78 1.06 7.15 16 3 N -0.52 -9.39 10.32 -187.87 -1.94 -11.33 16 4 C 0.16 2.29 11.31 84.78 0.96 3.25 16 5 C -0.18 -3.18 9.72 22.71 0.22 -2.96 16 6 C 0.12 2.81 6.79 41.98 0.29 3.10 16 7 C 0.57 16.22 7.83 86.97 0.68 16.90 16 8 O -0.55 -18.07 16.06 -3.64 -0.06 -18.13 16 9 N -0.68 -19.25 4.76 -441.59 -2.10 -21.35 16 10 C 0.14 4.35 3.30 45.68 0.15 4.50 16 11 H 0.10 3.13 7.42 -2.39 -0.02 3.11 16 12 C -0.12 -4.09 4.15 -10.31 -0.04 -4.14 16 13 H 0.07 2.38 8.14 -2.38 -0.02 2.36 16 14 C -0.10 -3.32 5.12 30.06 0.15 -3.16 16 15 C -0.13 -4.92 5.96 30.01 0.18 -4.74 16 16 C 0.19 8.60 3.98 86.47 0.34 8.95 16 17 N -0.58 -27.58 2.64 -681.85 -1.80 -29.38 16 18 C -0.26 -14.04 9.48 84.03 0.80 -13.25 16 19 H 0.06 3.19 7.83 -2.91 -0.02 3.17 16 20 C -0.04 -2.20 4.91 84.86 0.42 -1.78 16 21 N -0.93 -52.71 10.91 21.65 0.24 -52.48 16 22 Si 0.96 44.47 29.58 68.60 2.03 46.50 16 23 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 24 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 25 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 26 C 0.17 6.82 3.43 45.45 0.16 6.98 16 27 H 0.07 2.62 7.95 -2.39 -0.02 2.60 16 28 C -0.11 -3.74 1.33 -51.75 -0.07 -3.81 16 29 C -0.13 -4.79 7.28 71.98 0.52 -4.26 16 30 C -0.12 -3.95 8.91 71.98 0.64 -3.31 16 31 N -0.51 -11.98 9.60 -177.09 -1.70 -13.68 16 32 H 0.10 1.14 8.14 -2.39 -0.02 1.13 16 33 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.22 1.03 8.06 -2.91 -0.02 1.01 16 36 H 0.17 2.63 7.74 -2.91 -0.02 2.61 16 37 H 0.42 11.36 6.17 -92.70 -0.57 10.79 16 38 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 39 H 0.08 2.58 4.69 -2.38 -0.01 2.57 16 40 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 41 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.02 1.21 5.53 -2.39 -0.01 1.19 16 43 H 0.03 1.79 6.47 -2.39 -0.02 1.77 16 44 H 0.25 13.79 8.31 -92.71 -0.77 13.02 16 45 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 46 H 0.03 1.38 8.05 -2.38 -0.02 1.36 16 47 H 0.09 3.45 1.86 -2.39 0.00 3.45 16 48 H 0.06 1.73 5.96 -2.39 -0.01 1.71 16 49 H 0.04 1.54 8.14 -2.38 -0.02 1.52 16 50 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -65.49 384.08 2.25 -63.23 By element: Atomic # 1 Polarization: 27.23 SS G_CDS: 0.40 Total: 27.63 kcal Atomic # 6 Polarization: 1.79 SS G_CDS: 7.19 Total: 8.99 kcal Atomic # 7 Polarization: -120.91 SS G_CDS: -7.31 Total: -128.22 kcal Atomic # 8 Polarization: -18.07 SS G_CDS: -0.06 Total: -18.13 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -65.49 2.25 -63.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087317029.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.152 kcal (2) G-P(sol) polarization free energy of solvation -65.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds