Wall clock time and date at job start Wed Apr 1 2020 03:17:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31914 * 119.04573 * 2 1 4 4 C 1.32176 * 121.03668 * 180.02562 * 3 2 1 5 5 C 1.38800 * 119.14664 * 0.02562 * 4 3 2 6 6 C 1.39490 * 118.26325 * 359.97438 * 5 4 3 7 7 C 1.48460 * 120.55111 * 179.97438 * 6 5 4 8 8 O 1.21481 * 119.99581 * 0.02562 * 7 6 5 9 9 N 1.34773 * 120.00251 * 180.02562 * 7 6 5 10 10 C 1.46498 * 119.99844 * 180.02562 * 9 7 6 11 11 H 1.08992 * 112.87080 * 26.75825 * 10 9 7 12 12 C 1.54153 * 113.63560 * 255.49117 * 10 9 7 13 13 H 1.09007 * 114.24860 * 104.29172 * 12 10 9 14 14 C 1.53067 * 112.18169 * 333.57051 * 12 10 9 15 15 C 1.53023 * 109.41020 * 213.35902 * 14 12 10 16 16 C 1.53191 * 108.46892 * 65.21807 * 15 14 12 17 17 N 1.45900 * 109.70025 * 301.90090 * 16 15 14 18 18 C 1.36937 * 118.48521 * 220.07011 * 17 16 15 19 19 H 1.08001 * 119.99635 * 153.04857 * 18 17 16 20 20 C 1.38812 * 119.99812 * 333.05587 * 18 17 16 21 21 N 1.31619 * 120.00114 * 334.67091 * 20 18 17 22 22 Si 1.86804 * 119.99881 * 154.67404 * 20 18 17 23 23 H 1.48497 * 109.47080 * 179.97438 * 22 20 18 24 24 H 1.48501 * 109.46927 * 59.99628 * 22 20 18 25 25 H 1.48500 * 109.47079 * 299.99842 * 22 20 18 26 26 C 1.45087 * 123.02805 * 39.79472 * 17 16 15 27 27 H 1.09002 * 112.25633 * 203.16146 * 26 17 16 28 28 C 1.53387 * 114.62990 * 74.01599 * 26 17 16 29 29 C 1.53001 * 113.68632 * 331.10860 * 28 26 17 30 30 C 1.53005 * 113.68563 * 102.24185 * 28 26 17 31 31 N 1.31557 * 119.04321 * 180.28108 * 2 1 3 32 32 H 1.09003 * 109.47290 * 89.99463 * 1 2 3 33 33 H 1.08997 * 109.46905 * 209.99884 * 1 2 3 34 34 H 1.09003 * 109.46597 * 329.99120 * 1 2 3 35 35 H 1.08002 * 120.42213 * 180.02562 * 4 3 2 36 36 H 1.08003 * 120.86628 * 179.97438 * 5 4 3 37 37 H 0.96993 * 119.99858 * 359.97438 * 9 7 6 38 38 H 1.09002 * 109.47744 * 333.33906 * 14 12 10 39 39 H 1.08991 * 109.48266 * 93.37690 * 14 12 10 40 40 H 1.08995 * 109.55862 * 184.47431 * 15 14 12 41 41 H 1.08998 * 109.56018 * 304.69802 * 15 14 12 42 42 H 1.09004 * 108.91931 * 182.19107 * 16 15 14 43 43 H 1.08999 * 110.07504 * 62.33383 * 16 15 14 44 44 H 0.96997 * 119.99849 * 354.09180 * 21 20 18 45 45 H 1.09002 * 109.46726 * 91.10711 * 29 28 26 46 46 H 1.08998 * 109.47277 * 211.10207 * 29 28 26 47 47 H 1.09000 * 109.46881 * 331.10846 * 29 28 26 48 48 H 1.09000 * 109.47104 * 60.00117 * 30 28 26 49 49 H 1.09007 * 109.46683 * 180.02562 * 30 28 26 50 50 H 1.08997 * 109.46985 * 300.00213 * 30 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1474 1.1532 0.0000 4 6 3.4684 1.1992 -0.0005 5 6 4.1861 0.0111 -0.0016 6 6 3.4761 -1.1895 -0.0015 7 6 4.1924 -2.4899 -0.0032 8 8 5.4070 -2.5142 -0.0042 9 7 3.4953 -3.6433 -0.0037 10 6 4.2023 -4.9264 -0.0048 11 1 5.1922 -4.8650 0.4470 12 6 4.1901 -5.6376 -1.3725 13 1 5.1332 -5.5790 -1.9159 14 6 2.9777 -5.2418 -2.2188 15 6 2.5387 -6.4365 -3.0683 16 6 2.0448 -7.5430 -2.1310 17 7 3.1078 -7.9117 -1.2023 18 6 3.2792 -9.2358 -0.8981 19 1 4.2511 -9.5999 -0.5994 20 6 2.2036 -10.1101 -0.9738 21 7 0.9756 -9.6559 -0.8402 22 14 2.4992 -11.9315 -1.2653 23 1 1.1971 -12.6443 -1.3040 24 1 3.3310 -12.4803 -0.1643 25 1 3.2047 -12.1177 -2.5587 26 6 3.9956 -6.9407 -0.5906 27 1 4.9374 -7.3865 -0.2705 28 6 3.3543 -6.0985 0.5194 29 6 1.8482 -5.8944 0.3438 30 6 3.7351 -6.5496 1.9310 31 7 2.1456 -1.1501 -0.0056 32 1 -0.3634 0.0001 -1.0277 33 1 -0.3633 -0.8900 0.5138 34 1 -0.3632 0.8900 0.5140 35 1 3.9826 2.1489 -0.0001 36 1 5.2661 0.0162 -0.0024 37 1 2.5256 -3.6239 -0.0026 38 1 2.1598 -4.9412 -1.5640 39 1 3.2454 -4.4108 -2.8712 40 1 1.7264 -6.1351 -3.7297 41 1 3.3809 -6.7909 -3.6625 42 1 1.7666 -8.4126 -2.7266 43 1 1.1768 -7.1978 -1.5693 44 1 0.8250 -8.7272 -0.6040 45 1 1.3110 -6.6884 0.8626 46 1 1.5613 -4.9290 0.7608 47 1 1.5993 -5.9204 -0.7171 48 1 4.8159 -6.4813 2.0551 49 1 3.2438 -5.9078 2.6624 50 1 3.4167 -7.5811 2.0811 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087317030.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:17:49 Heat of formation + Delta-G solvation = 71.623334 kcal Electronic energy + Delta-G solvation = -31764.871329 eV Core-core repulsion = 27794.160510 eV Total energy + Delta-G solvation = -3970.710819 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.60081 -40.96895 -38.90581 -35.53951 -34.34768 -33.54167 -33.07540 -32.99544 -30.12254 -30.08653 -28.82967 -27.07285 -26.39455 -25.49431 -24.22773 -23.20728 -22.57237 -21.43166 -20.32198 -19.57024 -18.51390 -17.98265 -17.50927 -17.29365 -15.91659 -15.82854 -15.72788 -15.30321 -15.08523 -14.81532 -14.30558 -13.98505 -13.85847 -13.71016 -13.63485 -13.40370 -12.92103 -12.82891 -12.72149 -12.67399 -12.48529 -11.90735 -11.75450 -11.58201 -11.44021 -11.31295 -11.28135 -11.13123 -10.72119 -10.70402 -10.53835 -10.25725 -10.12878 -10.01644 -9.87849 -9.85688 -9.72151 -9.60352 -9.53147 -9.10527 -8.70509 -8.30225 -6.85421 -6.04336 -3.23780 0.20798 0.56494 2.59339 2.91644 3.49512 3.50598 3.50839 3.53044 3.68687 3.70497 4.31332 4.54243 4.60520 4.64972 4.84817 4.92815 5.05998 5.09764 5.16476 5.23113 5.24751 5.29608 5.43486 5.52682 5.56770 5.58664 5.71944 5.81594 5.87385 5.96316 5.97530 6.02855 6.09096 6.16947 6.24163 6.33052 6.42984 6.43731 6.44473 6.48696 6.55475 6.61393 6.70846 6.81358 6.91354 7.01300 7.07516 7.26073 7.47066 7.67381 8.04638 8.08046 8.60553 9.17685 9.86697 10.22092 11.21797 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.020103 B = 0.002935 C = 0.002817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.526039 B = 9537.528810 C = 9936.237237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.317 3.683 3 N -0.509 5.509 4 C 0.153 3.847 5 C -0.180 4.180 6 C 0.140 3.860 7 C 0.564 3.436 8 O -0.530 6.530 9 N -0.682 5.682 10 C 0.123 3.877 11 H 0.110 0.890 12 C -0.131 4.131 13 H 0.073 0.927 14 C -0.104 4.104 15 C -0.137 4.137 16 C 0.155 3.845 17 N -0.572 5.572 18 C -0.358 4.358 19 H 0.056 0.944 20 C -0.018 4.018 21 N -0.915 5.915 22 Si 1.060 2.940 23 H -0.286 1.286 24 H -0.294 1.294 25 H -0.294 1.294 26 C 0.192 3.808 27 H 0.077 0.923 28 C -0.113 4.113 29 C -0.141 4.141 30 C -0.126 4.126 31 N -0.495 5.495 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.177 0.823 36 H 0.161 0.839 37 H 0.412 0.588 38 H 0.075 0.925 39 H 0.045 0.955 40 H 0.054 0.946 41 H 0.059 0.941 42 H 0.065 0.935 43 H 0.030 0.970 44 H 0.271 0.729 45 H 0.062 0.938 46 H 0.036 0.964 47 H 0.090 0.910 48 H 0.047 0.953 49 H 0.041 0.959 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.442 19.460 1.457 19.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.050 3.950 3 N -0.224 5.224 4 C -0.015 4.015 5 C -0.203 4.203 6 C -0.008 4.008 7 C 0.347 3.653 8 O -0.406 6.406 9 N -0.332 5.332 10 C 0.018 3.982 11 H 0.128 0.872 12 C -0.152 4.152 13 H 0.092 0.908 14 C -0.141 4.141 15 C -0.176 4.176 16 C 0.030 3.970 17 N -0.291 5.291 18 C -0.487 4.487 19 H 0.074 0.926 20 C -0.221 4.221 21 N -0.556 5.556 22 Si 0.890 3.110 23 H -0.212 1.212 24 H -0.221 1.221 25 H -0.222 1.222 26 C 0.081 3.919 27 H 0.095 0.905 28 C -0.117 4.117 29 C -0.198 4.198 30 C -0.184 4.184 31 N -0.212 5.212 32 H 0.107 0.893 33 H 0.108 0.892 34 H 0.106 0.894 35 H 0.194 0.806 36 H 0.178 0.822 37 H 0.250 0.750 38 H 0.093 0.907 39 H 0.063 0.937 40 H 0.072 0.928 41 H 0.077 0.923 42 H 0.083 0.917 43 H 0.048 0.952 44 H 0.082 0.918 45 H 0.081 0.919 46 H 0.054 0.946 47 H 0.108 0.892 48 H 0.066 0.934 49 H 0.060 0.940 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.540 17.864 1.177 17.910 hybrid contribution 1.471 1.627 0.383 2.226 sum 2.011 19.491 1.560 19.656 Atomic orbital electron populations 1.20624 0.85105 1.04529 1.04267 1.23295 0.98380 0.82928 0.90435 1.68221 1.10457 1.30434 1.13244 1.23357 0.89440 0.98653 0.90027 1.22971 1.03937 0.93000 1.00396 1.21798 0.89835 0.95065 0.94121 1.17846 0.86673 0.83086 0.77681 1.90782 1.12655 1.86879 1.50319 1.45976 1.11305 1.04929 1.71023 1.22966 0.97014 0.79997 0.98187 0.87198 1.23255 0.98724 0.98052 0.95143 0.90823 1.21499 0.97281 0.97367 0.97961 1.21984 1.00395 0.96936 0.98293 1.20891 0.90230 0.95628 0.90245 1.43215 1.35686 1.03002 1.47152 1.20014 0.95866 0.84375 1.48473 0.92640 1.25722 0.92679 1.04790 0.98871 1.70796 1.21008 1.18396 1.45357 0.83597 0.75259 0.75863 0.76278 1.21203 1.22081 1.22152 1.21027 0.93845 0.87147 0.89875 0.90491 1.23038 0.95824 0.95384 0.97493 1.22033 0.94002 0.99605 1.04148 1.21618 0.99982 1.01630 0.95123 1.68217 1.08774 1.31186 1.13045 0.89280 0.89211 0.89406 0.80610 0.82174 0.74956 0.90694 0.93658 0.92779 0.92254 0.91658 0.95233 0.91755 0.91851 0.94565 0.89169 0.93367 0.94030 0.91646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.65 10.31 36.00 0.37 -0.28 16 2 C 0.32 3.39 7.64 -157.30 -1.20 2.19 16 3 N -0.51 -5.24 10.32 -10.73 -0.11 -5.35 16 4 C 0.15 1.30 11.31 -17.20 -0.19 1.11 16 5 C -0.18 -1.83 9.72 -38.91 -0.38 -2.21 16 6 C 0.14 1.78 6.79 -82.64 -0.56 1.21 16 7 C 0.56 8.33 7.83 -12.05 -0.09 8.24 16 8 O -0.53 -9.00 16.06 5.38 0.09 -8.92 16 9 N -0.68 -9.91 4.34 -53.54 -0.23 -10.14 16 10 C 0.12 1.96 3.58 -66.88 -0.24 1.72 16 11 H 0.11 1.81 7.37 -51.93 -0.38 1.42 16 12 C -0.13 -2.24 4.26 -89.87 -0.38 -2.63 16 13 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 14 C -0.10 -1.70 4.67 -26.68 -0.12 -1.83 16 15 C -0.14 -2.49 6.07 -26.62 -0.16 -2.65 16 16 C 0.16 3.41 3.87 -4.27 -0.02 3.39 16 17 N -0.57 -13.21 2.53 -166.71 -0.42 -13.63 16 18 C -0.36 -9.45 9.35 -15.06 -0.14 -9.59 16 19 H 0.06 1.49 7.91 -52.49 -0.42 1.08 16 20 C -0.02 -0.49 4.59 -17.43 -0.08 -0.57 16 21 N -0.92 -26.05 12.59 55.49 0.70 -25.35 16 22 Si 1.06 24.64 29.99 -169.99 -5.10 19.54 16 23 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 24 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 25 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 26 C 0.19 3.79 3.54 -68.39 -0.24 3.55 16 27 H 0.08 1.57 7.92 -51.93 -0.41 1.16 16 28 C -0.11 -1.96 1.35 -153.85 -0.21 -2.16 16 29 C -0.14 -2.45 6.84 37.16 0.25 -2.20 16 30 C -0.13 -2.11 9.14 37.16 0.34 -1.77 16 31 N -0.49 -6.04 9.60 -7.32 -0.07 -6.11 16 32 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.18 0.81 8.06 -52.49 -0.42 0.39 16 36 H 0.16 1.43 7.74 -52.48 -0.41 1.02 16 37 H 0.41 5.75 5.11 -40.82 -0.21 5.54 16 38 H 0.07 1.20 3.75 -51.93 -0.19 1.01 16 39 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.07 1.64 6.83 -51.93 -0.35 1.28 16 43 H 0.03 0.68 4.75 -51.93 -0.25 0.43 16 44 H 0.27 7.62 6.22 -40.82 -0.25 7.37 16 45 H 0.06 1.25 8.08 -51.93 -0.42 0.83 16 46 H 0.04 0.54 6.52 -51.93 -0.34 0.20 16 47 H 0.09 1.63 2.00 -51.93 -0.10 1.52 16 48 H 0.05 0.74 7.95 -51.93 -0.41 0.33 16 49 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 50 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 LS Contribution 381.09 15.07 5.74 5.74 Total: -1.00 -30.55 381.09 -9.64 -40.19 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: -7.17 Total: 8.49 kcal Atomic # 6 Polarization: -1.41 SS G_CDS: -3.06 Total: -4.47 kcal Atomic # 7 Polarization: -60.44 SS G_CDS: -0.14 Total: -60.57 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: 0.09 Total: -8.92 kcal Atomic # 14 Polarization: 24.64 SS G_CDS: -5.10 Total: 19.54 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -30.55 -9.64 -40.19 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087317030.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.813 kcal (2) G-P(sol) polarization free energy of solvation -30.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.189 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds