Wall clock time and date at job start Wed Apr 1 2020 03:17:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31914 * 119.04573 * 2 1 4 4 C 1.32176 * 121.03668 * 180.02562 * 3 2 1 5 5 C 1.38800 * 119.14664 * 0.02562 * 4 3 2 6 6 C 1.39490 * 118.26325 * 359.97438 * 5 4 3 7 7 C 1.48460 * 120.55111 * 179.97438 * 6 5 4 8 8 O 1.21481 * 119.99581 * 0.02562 * 7 6 5 9 9 N 1.34773 * 120.00251 * 180.02562 * 7 6 5 10 10 C 1.46498 * 119.99844 * 180.02562 * 9 7 6 11 11 H 1.08992 * 112.87080 * 26.75825 * 10 9 7 12 12 C 1.54153 * 113.63560 * 255.49117 * 10 9 7 13 13 H 1.09007 * 114.24860 * 104.29172 * 12 10 9 14 14 C 1.53067 * 112.18169 * 333.57051 * 12 10 9 15 15 C 1.53023 * 109.41020 * 213.35902 * 14 12 10 16 16 C 1.53191 * 108.46892 * 65.21807 * 15 14 12 17 17 N 1.45900 * 109.70025 * 301.90090 * 16 15 14 18 18 C 1.36937 * 118.48521 * 220.07011 * 17 16 15 19 19 H 1.08001 * 119.99635 * 153.04857 * 18 17 16 20 20 C 1.38812 * 119.99812 * 333.05587 * 18 17 16 21 21 N 1.31619 * 120.00114 * 334.67091 * 20 18 17 22 22 Si 1.86804 * 119.99881 * 154.67404 * 20 18 17 23 23 H 1.48497 * 109.47080 * 179.97438 * 22 20 18 24 24 H 1.48501 * 109.46927 * 59.99628 * 22 20 18 25 25 H 1.48500 * 109.47079 * 299.99842 * 22 20 18 26 26 C 1.45087 * 123.02805 * 39.79472 * 17 16 15 27 27 H 1.09002 * 112.25633 * 203.16146 * 26 17 16 28 28 C 1.53387 * 114.62990 * 74.01599 * 26 17 16 29 29 C 1.53001 * 113.68632 * 331.10860 * 28 26 17 30 30 C 1.53005 * 113.68563 * 102.24185 * 28 26 17 31 31 N 1.31557 * 119.04321 * 180.28108 * 2 1 3 32 32 H 1.09003 * 109.47290 * 89.99463 * 1 2 3 33 33 H 1.08997 * 109.46905 * 209.99884 * 1 2 3 34 34 H 1.09003 * 109.46597 * 329.99120 * 1 2 3 35 35 H 1.08002 * 120.42213 * 180.02562 * 4 3 2 36 36 H 1.08003 * 120.86628 * 179.97438 * 5 4 3 37 37 H 0.96993 * 119.99858 * 359.97438 * 9 7 6 38 38 H 1.09002 * 109.47744 * 333.33906 * 14 12 10 39 39 H 1.08991 * 109.48266 * 93.37690 * 14 12 10 40 40 H 1.08995 * 109.55862 * 184.47431 * 15 14 12 41 41 H 1.08998 * 109.56018 * 304.69802 * 15 14 12 42 42 H 1.09004 * 108.91931 * 182.19107 * 16 15 14 43 43 H 1.08999 * 110.07504 * 62.33383 * 16 15 14 44 44 H 0.96997 * 119.99849 * 354.09180 * 21 20 18 45 45 H 1.09002 * 109.46726 * 91.10711 * 29 28 26 46 46 H 1.08998 * 109.47277 * 211.10207 * 29 28 26 47 47 H 1.09000 * 109.46881 * 331.10846 * 29 28 26 48 48 H 1.09000 * 109.47104 * 60.00117 * 30 28 26 49 49 H 1.09007 * 109.46683 * 180.02562 * 30 28 26 50 50 H 1.08997 * 109.46985 * 300.00213 * 30 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1474 1.1532 0.0000 4 6 3.4684 1.1992 -0.0005 5 6 4.1861 0.0111 -0.0016 6 6 3.4761 -1.1895 -0.0015 7 6 4.1924 -2.4899 -0.0032 8 8 5.4070 -2.5142 -0.0042 9 7 3.4953 -3.6433 -0.0037 10 6 4.2023 -4.9264 -0.0048 11 1 5.1922 -4.8650 0.4470 12 6 4.1901 -5.6376 -1.3725 13 1 5.1332 -5.5790 -1.9159 14 6 2.9777 -5.2418 -2.2188 15 6 2.5387 -6.4365 -3.0683 16 6 2.0448 -7.5430 -2.1310 17 7 3.1078 -7.9117 -1.2023 18 6 3.2792 -9.2358 -0.8981 19 1 4.2511 -9.5999 -0.5994 20 6 2.2036 -10.1101 -0.9738 21 7 0.9756 -9.6559 -0.8402 22 14 2.4992 -11.9315 -1.2653 23 1 1.1971 -12.6443 -1.3040 24 1 3.3310 -12.4803 -0.1643 25 1 3.2047 -12.1177 -2.5587 26 6 3.9956 -6.9407 -0.5906 27 1 4.9374 -7.3865 -0.2705 28 6 3.3543 -6.0985 0.5194 29 6 1.8482 -5.8944 0.3438 30 6 3.7351 -6.5496 1.9310 31 7 2.1456 -1.1501 -0.0056 32 1 -0.3634 0.0001 -1.0277 33 1 -0.3633 -0.8900 0.5138 34 1 -0.3632 0.8900 0.5140 35 1 3.9826 2.1489 -0.0001 36 1 5.2661 0.0162 -0.0024 37 1 2.5256 -3.6239 -0.0026 38 1 2.1598 -4.9412 -1.5640 39 1 3.2454 -4.4108 -2.8712 40 1 1.7264 -6.1351 -3.7297 41 1 3.3809 -6.7909 -3.6625 42 1 1.7666 -8.4126 -2.7266 43 1 1.1768 -7.1978 -1.5693 44 1 0.8250 -8.7272 -0.6040 45 1 1.3110 -6.6884 0.8626 46 1 1.5613 -4.9290 0.7608 47 1 1.5993 -5.9204 -0.7171 48 1 4.8159 -6.4813 2.0551 49 1 3.2438 -5.9078 2.6624 50 1 3.4167 -7.5811 2.0811 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087317030.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:17:48 Heat of formation + Delta-G solvation = 54.031667 kcal Electronic energy + Delta-G solvation = -31765.634161 eV Core-core repulsion = 27794.160510 eV Total energy + Delta-G solvation = -3971.473650 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.67306 -42.13428 -40.10745 -37.21916 -35.28195 -34.65704 -34.29366 -34.24430 -31.94979 -31.60088 -29.48408 -28.50912 -27.55985 -27.09448 -25.59254 -24.34205 -23.96162 -22.77100 -21.60976 -21.01086 -19.71892 -19.45197 -19.01445 -18.40159 -17.16309 -16.76941 -16.69998 -16.57984 -16.21511 -16.06015 -15.68610 -15.46189 -15.36947 -15.27602 -14.91200 -14.38877 -14.32028 -14.21719 -13.97224 -13.52040 -13.42831 -13.25148 -13.23989 -13.16978 -13.01837 -12.84919 -12.48403 -12.22468 -12.06475 -11.97453 -11.94959 -11.83019 -11.77271 -11.60415 -11.43352 -11.37540 -11.02861 -10.84445 -10.60738 -10.43505 -10.29738 -10.00572 -8.78321 -8.12771 -5.31277 -0.65474 -0.14970 1.56499 1.59561 1.65529 1.82903 1.84522 2.66589 2.67658 2.71448 3.00310 3.26792 3.39947 3.45236 3.53192 3.64415 3.70956 3.77572 3.90640 3.97770 4.11957 4.27506 4.34800 4.37929 4.39593 4.45112 4.52501 4.57808 4.69219 4.71372 4.72032 4.78152 4.82361 4.90246 4.90879 4.98263 5.00117 5.01138 5.13637 5.18407 5.24966 5.28823 5.32514 5.33608 5.45744 5.50110 5.65909 5.72761 5.93563 6.34006 6.52411 6.84752 6.96271 7.21515 7.90761 8.24476 9.09858 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.020103 B = 0.002935 C = 0.002817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.526039 B = 9537.528810 C = 9936.237237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.306 3.694 3 N -0.517 5.517 4 C 0.164 3.836 5 C -0.178 4.178 6 C 0.116 3.884 7 C 0.567 3.433 8 O -0.555 6.555 9 N -0.678 5.678 10 C 0.143 3.857 11 H 0.110 0.890 12 C -0.125 4.125 13 H 0.075 0.925 14 C -0.096 4.096 15 C -0.128 4.128 16 C 0.164 3.836 17 N -0.584 5.584 18 C -0.359 4.359 19 H 0.044 0.956 20 C -0.065 4.065 21 N -0.942 5.942 22 Si 1.104 2.896 23 H -0.293 1.293 24 H -0.281 1.281 25 H -0.285 1.285 26 C 0.173 3.827 27 H 0.064 0.936 28 C -0.108 4.108 29 C -0.133 4.133 30 C -0.122 4.122 31 N -0.510 5.510 32 H 0.099 0.901 33 H 0.091 0.909 34 H 0.100 0.900 35 H 0.218 0.782 36 H 0.171 0.829 37 H 0.415 0.585 38 H 0.081 0.919 39 H 0.064 0.936 40 H 0.076 0.924 41 H 0.053 0.947 42 H 0.026 0.974 43 H 0.021 0.979 44 H 0.262 0.738 45 H 0.033 0.967 46 H 0.063 0.937 47 H 0.085 0.915 48 H 0.060 0.940 49 H 0.057 0.943 50 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.850 22.332 1.327 22.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.039 3.961 3 N -0.232 5.232 4 C -0.004 4.004 5 C -0.201 4.201 6 C -0.030 4.030 7 C 0.352 3.648 8 O -0.433 6.433 9 N -0.329 5.329 10 C 0.038 3.962 11 H 0.128 0.872 12 C -0.146 4.146 13 H 0.094 0.906 14 C -0.133 4.133 15 C -0.167 4.167 16 C 0.039 3.961 17 N -0.303 5.303 18 C -0.490 4.490 19 H 0.062 0.938 20 C -0.263 4.263 21 N -0.584 5.584 22 Si 0.931 3.069 23 H -0.219 1.219 24 H -0.207 1.207 25 H -0.211 1.211 26 C 0.064 3.936 27 H 0.082 0.918 28 C -0.112 4.112 29 C -0.189 4.189 30 C -0.179 4.179 31 N -0.228 5.228 32 H 0.117 0.883 33 H 0.110 0.890 34 H 0.119 0.881 35 H 0.235 0.765 36 H 0.189 0.811 37 H 0.255 0.745 38 H 0.099 0.901 39 H 0.083 0.917 40 H 0.095 0.905 41 H 0.071 0.929 42 H 0.045 0.955 43 H 0.039 0.961 44 H 0.073 0.927 45 H 0.052 0.948 46 H 0.081 0.919 47 H 0.103 0.897 48 H 0.079 0.921 49 H 0.076 0.924 50 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 0.960 20.765 1.054 20.814 hybrid contribution 1.390 0.831 0.443 1.679 sum 2.350 21.596 1.497 21.775 Atomic orbital electron populations 1.20732 0.83271 1.05270 1.05117 1.23855 0.99605 0.82690 0.89952 1.68335 1.11306 1.30161 1.13348 1.24043 0.88897 0.99683 0.87780 1.23180 1.04552 0.92678 0.99651 1.21576 0.90430 0.94606 0.96423 1.18131 0.86426 0.83698 0.76590 1.90765 1.13764 1.87384 1.51385 1.45843 1.11360 1.04445 1.71246 1.22589 0.96601 0.80280 0.96734 0.87222 1.23206 0.99254 0.96286 0.95834 0.90617 1.21443 0.96979 0.96962 0.97907 1.21874 1.00835 0.96123 0.97841 1.20715 0.89937 0.95325 0.90109 1.43316 1.36281 1.02677 1.48075 1.20186 0.95160 0.86249 1.47364 0.93781 1.26817 0.92431 1.07968 0.99079 1.70877 1.21780 1.18029 1.47690 0.82978 0.74958 0.72107 0.76877 1.21944 1.20703 1.21124 1.21215 0.92968 0.87656 0.91765 0.91767 1.22887 0.95933 0.95456 0.96936 1.21929 0.93580 0.99912 1.03529 1.21567 1.00969 1.00137 0.95254 1.68183 1.08595 1.32103 1.13912 0.88265 0.89010 0.88116 0.76507 0.81115 0.74493 0.90097 0.91737 0.90532 0.92860 0.95500 0.96117 0.92747 0.94819 0.91859 0.89729 0.92082 0.92357 0.94504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.08 10.31 71.23 0.73 -0.35 16 2 C 0.31 5.84 7.64 138.78 1.06 6.90 16 3 N -0.52 -9.11 10.32 -187.87 -1.94 -11.05 16 4 C 0.16 2.23 11.31 84.78 0.96 3.19 16 5 C -0.18 -3.14 9.72 22.71 0.22 -2.92 16 6 C 0.12 2.72 6.79 41.98 0.29 3.01 16 7 C 0.57 15.76 7.83 86.97 0.68 16.44 16 8 O -0.56 -17.98 16.06 -3.66 -0.06 -18.04 16 9 N -0.68 -18.51 4.34 -441.61 -1.91 -20.43 16 10 C 0.14 4.39 3.58 45.67 0.16 4.55 16 11 H 0.11 3.45 7.37 -2.39 -0.02 3.44 16 12 C -0.12 -4.17 4.26 -10.31 -0.04 -4.21 16 13 H 0.08 2.52 8.14 -2.38 -0.02 2.50 16 14 C -0.10 -2.99 4.67 30.62 0.14 -2.84 16 15 C -0.13 -4.54 6.07 30.67 0.19 -4.36 16 16 C 0.16 7.40 3.87 86.56 0.33 7.73 16 17 N -0.58 -27.72 2.53 -681.34 -1.72 -29.44 16 18 C -0.36 -19.59 9.35 84.03 0.79 -18.80 16 19 H 0.04 2.45 7.91 -2.91 -0.02 2.43 16 20 C -0.07 -3.63 4.59 84.86 0.39 -3.24 16 21 N -0.94 -55.46 12.59 21.65 0.27 -55.18 16 22 Si 1.10 50.90 29.99 68.60 2.06 52.95 16 23 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 24 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 25 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 26 C 0.17 6.92 3.54 45.45 0.16 7.08 16 27 H 0.06 2.69 7.92 -2.39 -0.02 2.67 16 28 C -0.11 -3.72 1.35 -51.75 -0.07 -3.79 16 29 C -0.13 -4.59 6.84 71.98 0.49 -4.10 16 30 C -0.12 -4.07 9.14 71.98 0.66 -3.42 16 31 N -0.51 -11.42 9.60 -177.09 -1.70 -13.12 16 32 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.22 0.99 8.06 -2.91 -0.02 0.96 16 36 H 0.17 2.59 7.74 -2.91 -0.02 2.57 16 37 H 0.42 10.78 5.11 -92.71 -0.47 10.31 16 38 H 0.08 2.45 3.75 -2.39 -0.01 2.45 16 39 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 41 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 42 H 0.03 1.39 6.83 -2.38 -0.02 1.38 16 43 H 0.02 0.99 4.75 -2.39 -0.01 0.98 16 44 H 0.26 15.39 6.22 -92.71 -0.58 14.81 16 45 H 0.03 1.35 8.08 -2.39 -0.02 1.33 16 46 H 0.06 1.81 6.52 -2.39 -0.02 1.79 16 47 H 0.08 3.03 2.00 -2.39 0.00 3.03 16 48 H 0.06 1.85 7.95 -2.39 -0.02 1.83 16 49 H 0.06 1.73 8.14 -2.38 -0.02 1.72 16 50 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -67.94 381.09 2.83 -65.11 By element: Atomic # 1 Polarization: 27.65 SS G_CDS: 0.69 Total: 28.34 kcal Atomic # 6 Polarization: -6.27 SS G_CDS: 7.14 Total: 0.87 kcal Atomic # 7 Polarization: -122.23 SS G_CDS: -7.00 Total: -129.23 kcal Atomic # 8 Polarization: -17.98 SS G_CDS: -0.06 Total: -18.04 kcal Atomic # 14 Polarization: 50.90 SS G_CDS: 2.06 Total: 52.95 kcal Total: -67.94 2.83 -65.11 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087317030.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.137 kcal (2) G-P(sol) polarization free energy of solvation -67.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds