Wall clock time and date at job start Wed Apr 1 2020 03:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50706 * 109.47190 * 2 1 4 4 C 1.35370 * 126.38232 * 84.99963 * 3 2 1 5 5 C 1.41498 * 105.50219 * 180.02562 * 4 3 2 6 6 C 1.47707 * 126.51764 * 179.97438 * 5 4 3 7 7 O 1.21568 * 120.00160 * 359.97438 * 6 5 4 8 8 N 1.34773 * 119.99963 * 179.97438 * 6 5 4 9 9 C 1.49502 * 125.94559 * 179.97438 * 8 6 5 10 10 C 1.52701 * 103.10233 * 154.38987 * 9 8 6 11 11 H 1.08997 * 111.04648 * 286.17251 * 10 9 8 12 12 C 1.56354 * 97.92287 * 42.80492 * 10 9 8 13 13 H 1.08997 * 101.93746 * 62.06169 * 12 10 9 14 14 C 1.48435 * 103.54243 * 313.65962 * 12 10 9 15 15 C 1.49280 * 107.36689 * 171.86915 * 12 10 9 16 16 H 1.09009 * 114.27042 * 153.36394 * 15 12 10 17 17 C 1.55159 * 108.25500 * 24.22106 * 15 12 10 18 18 C 1.53864 * 108.67915 * 288.55198 * 17 15 12 19 19 C 1.52639 * 119.08444 * 153.35405 * 10 9 8 20 20 H 1.08999 * 114.18280 * 45.48813 * 19 10 9 21 21 C 1.55088 * 109.35492 * 277.47222 * 19 10 9 22 22 N 1.48673 * 106.90437 * 289.23852 * 21 19 10 23 23 C 1.36938 * 123.98072 * 216.37397 * 22 21 19 24 24 H 1.08004 * 119.99799 * 160.22918 * 23 22 21 25 25 C 1.38813 * 120.00033 * 340.23015 * 23 22 21 26 26 N 1.31616 * 120.00163 * 349.78225 * 25 23 22 27 27 Si 1.86805 * 119.99885 * 169.77908 * 25 23 22 28 28 H 1.48495 * 109.46862 * 90.00124 * 27 25 23 29 29 H 1.48499 * 109.46994 * 210.00384 * 27 25 23 30 30 H 1.48501 * 109.46948 * 330.00149 * 27 25 23 31 31 N 1.31816 * 106.96443 * 0.23751 * 5 4 3 32 32 N 1.28469 * 110.06810 * 359.59727 * 31 5 4 33 33 H 0.97002 * 124.87866 * 180.12409 * 32 31 5 34 34 H 1.09001 * 109.46729 * 59.99477 * 1 2 3 35 35 H 1.08997 * 109.47215 * 179.97438 * 1 2 3 36 36 H 1.08996 * 109.46805 * 300.00039 * 1 2 3 37 37 H 1.09002 * 109.47029 * 240.00622 * 2 1 3 38 38 H 1.09000 * 109.47160 * 120.00205 * 2 1 3 39 39 H 1.07997 * 127.24500 * 359.97438 * 4 3 2 40 40 H 1.09003 * 110.72115 * 272.84038 * 9 8 6 41 41 H 1.08998 * 110.72154 * 35.94069 * 9 8 6 42 42 H 1.09000 * 110.44750 * 272.95666 * 14 12 10 43 43 H 1.09001 * 110.44385 * 150.42832 * 14 12 10 44 44 H 1.08998 * 109.60689 * 48.31278 * 17 15 12 45 45 H 1.09004 * 109.60196 * 168.79615 * 17 15 12 46 46 H 1.09003 * 109.85581 * 275.98534 * 18 17 15 47 47 H 1.09003 * 109.90835 * 155.01798 * 18 17 15 48 48 H 1.08997 * 109.96360 * 169.88681 * 21 19 10 49 49 H 1.09004 * 110.04160 * 48.62943 * 21 19 10 50 50 H 0.96999 * 119.99815 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.2105 2.2096 1.0857 5 6 2.6921 3.4416 0.5832 6 6 3.0407 4.6381 1.3760 7 8 2.9220 4.6216 2.5857 8 7 3.4906 5.7482 0.7582 9 6 3.8796 7.0278 1.4262 10 6 4.8734 7.6431 0.4436 11 1 5.8285 7.1187 0.4728 12 6 4.0925 7.3332 -0.8751 13 1 3.1724 7.8992 -0.7305 14 6 3.6878 5.9142 -0.7140 15 6 4.7997 8.0346 -1.9870 16 1 4.6694 7.5700 -2.9645 17 6 6.2767 8.2509 -1.5638 18 6 6.3225 9.3312 -0.4692 19 6 5.0454 9.1595 0.4139 20 1 5.1326 9.6183 1.3988 21 6 3.9251 9.7869 -0.4559 22 7 4.2200 9.4250 -1.8675 23 6 3.9929 10.2539 -2.9336 24 1 4.5039 10.0822 -3.8695 25 6 3.1060 11.3147 -2.8114 26 7 2.3352 11.4091 -1.7487 27 14 3.0066 12.6085 -4.1552 28 1 1.9929 12.2008 -5.1608 29 1 2.6168 13.9118 -3.5596 30 1 4.3312 12.7415 -4.8133 31 7 2.7649 3.3203 -0.7273 32 7 2.3882 2.1447 -1.0829 33 1 2.3593 1.8246 -1.9981 34 1 -0.3633 0.5139 -0.8900 35 1 -0.3633 -1.0276 -0.0005 36 1 -0.3633 0.5138 0.8900 37 1 1.8933 -0.5137 -0.8901 38 1 1.8934 -0.5139 0.8900 39 1 2.0235 1.9528 2.1179 40 1 3.0123 7.6755 1.5538 41 1 4.3575 6.8320 2.3861 42 1 4.4759 5.2507 -1.0698 43 1 2.7568 5.7210 -1.2470 44 1 6.6860 7.3186 -1.1748 45 1 6.8597 8.5778 -2.4248 46 1 6.3266 10.3210 -0.9257 47 1 7.2155 9.2023 0.1425 48 1 3.9279 10.8708 -0.3412 49 1 2.9553 9.3845 -0.1633 50 1 1.7158 12.1506 -1.6632 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087337672.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:43:38 Heat of formation + Delta-G solvation = 111.928839 kcal Electronic energy + Delta-G solvation = -31266.466818 eV Core-core repulsion = 27297.503777 eV Total energy + Delta-G solvation = -3968.963041 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.80887 -40.99433 -38.68913 -35.85651 -34.62531 -33.07289 -32.04861 -31.01716 -30.29976 -29.59665 -29.39606 -27.64330 -25.70441 -24.49857 -24.08239 -22.47080 -21.68273 -21.22856 -20.91056 -20.34047 -18.88460 -17.87568 -17.16011 -16.81290 -16.55568 -15.88091 -15.78162 -15.06836 -14.81223 -14.76068 -14.56189 -14.26956 -14.03137 -13.98629 -13.58834 -13.21301 -12.91704 -12.76951 -12.50424 -12.18051 -12.02347 -11.95827 -11.67325 -11.55185 -11.28423 -11.16392 -11.05804 -10.91030 -10.79121 -10.77640 -10.51992 -10.27773 -10.11681 -10.06583 -9.80686 -9.50222 -9.44181 -9.21130 -9.13040 -9.10280 -8.42495 -8.36736 -6.71160 -5.74183 -3.10777 1.56712 1.96946 2.66133 3.11790 3.38650 3.45347 3.46512 3.53666 4.21226 4.36959 4.45358 4.51728 4.72758 4.84651 5.03344 5.07027 5.15567 5.22097 5.33107 5.42470 5.45641 5.50434 5.51210 5.63046 5.72766 5.75937 5.79660 5.81051 5.88623 5.89736 5.99126 6.01657 6.20084 6.20778 6.26297 6.36869 6.38666 6.43024 6.49864 6.53946 6.76559 6.83246 6.83974 6.97422 7.12869 7.19565 7.39536 7.64183 7.67331 7.76903 7.80130 8.28585 8.33834 9.17374 9.78102 10.47400 11.36239 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.015697 B = 0.002816 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1783.352293 B = 9941.970940 C =10699.191102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.053 4.053 3 C 0.012 3.988 4 C -0.177 4.177 5 C -0.003 4.003 6 C 0.614 3.386 7 O -0.544 6.544 8 N -0.609 5.609 9 C 0.118 3.882 10 C -0.101 4.101 11 H 0.080 0.920 12 C -0.158 4.158 13 H 0.094 0.906 14 C 0.146 3.854 15 C 0.184 3.816 16 H 0.079 0.921 17 C -0.122 4.122 18 C -0.093 4.093 19 C -0.110 4.110 20 H 0.079 0.921 21 C 0.183 3.817 22 N -0.599 5.599 23 C -0.231 4.231 24 H 0.070 0.930 25 C -0.004 4.004 26 N -0.914 5.914 27 Si 0.905 3.095 28 H -0.289 1.289 29 H -0.291 1.291 30 H -0.281 1.281 31 N -0.248 5.248 32 N -0.382 5.382 33 H 0.443 0.557 34 H 0.055 0.945 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.075 0.925 38 H 0.091 0.909 39 H 0.160 0.840 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.064 0.936 43 H 0.075 0.925 44 H 0.044 0.956 45 H 0.052 0.948 46 H 0.070 0.930 47 H 0.037 0.963 48 H 0.080 0.920 49 H 0.025 0.975 50 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.497 -20.628 2.862 20.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.092 4.092 3 C -0.114 4.114 4 C -0.205 4.205 5 C -0.164 4.164 6 C 0.400 3.600 7 O -0.421 6.421 8 N -0.342 5.342 9 C -0.003 4.003 10 C -0.120 4.120 11 H 0.098 0.902 12 C -0.178 4.178 13 H 0.112 0.888 14 C 0.023 3.977 15 C 0.078 3.922 16 H 0.097 0.903 17 C -0.161 4.161 18 C -0.131 4.131 19 C -0.130 4.130 20 H 0.097 0.903 21 C 0.058 3.942 22 N -0.325 5.325 23 C -0.360 4.360 24 H 0.088 0.912 25 C -0.202 4.202 26 N -0.560 5.560 27 Si 0.735 3.265 28 H -0.217 1.217 29 H -0.217 1.217 30 H -0.207 1.207 31 N -0.084 5.084 32 N -0.096 5.096 33 H 0.287 0.713 34 H 0.074 0.926 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.093 0.907 38 H 0.109 0.891 39 H 0.178 0.822 40 H 0.092 0.908 41 H 0.094 0.906 42 H 0.083 0.917 43 H 0.093 0.907 44 H 0.063 0.937 45 H 0.070 0.930 46 H 0.089 0.911 47 H 0.056 0.944 48 H 0.098 0.902 49 H 0.043 0.957 50 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 1.545 -19.866 2.614 20.097 hybrid contribution -0.499 0.103 -0.586 0.777 sum 1.046 -19.763 2.028 19.894 Atomic orbital electron populations 1.21790 0.94016 1.02203 1.02793 1.20105 0.96444 0.88735 1.03894 1.21428 1.05652 0.96881 0.87420 1.21471 1.06942 0.92341 0.99724 1.21897 1.07976 0.96655 0.89849 1.16489 0.77218 0.80424 0.85826 1.90771 1.55360 1.82875 1.13078 1.49589 1.63365 1.12403 1.08851 1.22110 0.98401 0.83639 0.96184 1.22566 0.97459 0.97038 0.94963 0.90185 1.21919 1.03291 0.95082 0.97471 0.88772 1.20813 1.01032 0.96540 0.79267 1.20823 0.90752 0.86143 0.94518 0.90316 1.22598 0.98215 0.97242 0.98048 1.22081 0.95040 1.00073 0.95879 1.22680 0.99359 0.92438 0.98513 0.90265 1.21408 0.91658 0.99197 0.81914 1.46032 1.74993 1.09218 1.02226 1.19083 1.18413 1.06274 0.92221 0.91247 1.24943 0.96765 1.00597 0.97847 1.69943 1.25265 1.32016 1.28786 0.86244 0.77642 0.81332 0.81244 1.21661 1.21737 1.20688 1.73772 1.17653 1.01843 1.15090 1.43389 1.47781 1.08653 1.09813 0.71259 0.92634 0.91777 0.91820 0.90687 0.89097 0.82208 0.90758 0.90644 0.91729 0.90708 0.93719 0.92964 0.91145 0.94388 0.90221 0.95737 0.93736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 9.90 37.16 0.37 -0.43 16 2 C -0.05 -0.28 6.49 -27.88 -0.18 -0.46 16 3 C 0.01 0.11 6.48 -82.21 -0.53 -0.43 16 4 C -0.18 -2.15 10.73 -39.36 -0.42 -2.57 16 5 C 0.00 -0.04 6.99 -82.76 -0.58 -0.62 16 6 C 0.61 10.70 7.88 -12.39 -0.10 10.60 16 7 O -0.54 -10.72 17.23 5.31 0.09 -10.63 16 8 N -0.61 -10.25 3.43 -172.70 -0.59 -10.84 16 9 C 0.12 1.95 6.48 -2.53 -0.02 1.93 16 10 C -0.10 -1.67 2.48 -89.16 -0.22 -1.89 16 11 H 0.08 1.27 6.50 -51.93 -0.34 0.93 16 12 C -0.16 -2.81 2.38 -92.88 -0.22 -3.03 16 13 H 0.09 2.02 4.60 -51.93 -0.24 1.78 16 14 C 0.15 2.34 5.43 -4.62 -0.03 2.31 16 15 C 0.18 3.54 4.69 -66.02 -0.31 3.23 16 16 H 0.08 1.49 8.14 -51.92 -0.42 1.07 16 17 C -0.12 -2.09 5.58 -25.14 -0.14 -2.23 16 18 C -0.09 -1.64 5.49 -24.55 -0.13 -1.77 16 19 C -0.11 -1.97 4.21 -87.97 -0.37 -2.34 16 20 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 21 C 0.18 4.14 4.01 -1.74 -0.01 4.13 16 22 N -0.60 -14.09 2.14 -159.77 -0.34 -14.43 16 23 C -0.23 -6.09 10.12 -15.06 -0.15 -6.24 16 24 H 0.07 1.80 7.85 -52.48 -0.41 1.39 16 25 C 0.00 -0.12 5.27 -17.43 -0.09 -0.21 16 26 N -0.91 -26.04 10.85 55.49 0.60 -25.43 16 27 Si 0.90 21.58 29.57 -169.99 -5.03 16.56 16 28 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 29 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 30 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 31 N -0.25 -3.27 9.86 33.42 0.33 -2.94 16 32 N -0.38 -3.59 6.83 33.50 0.23 -3.36 16 33 H 0.44 2.54 8.96 -190.44 -1.71 0.83 16 34 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 36 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 38 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.16 1.79 8.06 -52.49 -0.42 1.37 16 40 H 0.07 1.30 8.11 -51.93 -0.42 0.88 16 41 H 0.08 1.20 8.07 -51.93 -0.42 0.78 16 42 H 0.06 0.97 8.00 -51.93 -0.42 0.56 16 43 H 0.07 1.24 7.57 -51.93 -0.39 0.85 16 44 H 0.04 0.69 6.86 -51.93 -0.36 0.33 16 45 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 46 H 0.07 1.42 7.71 -51.93 -0.40 1.02 16 47 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 48 H 0.08 2.05 6.68 -51.93 -0.35 1.71 16 49 H 0.02 0.61 6.61 -51.93 -0.34 0.27 16 50 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 382.99 15.07 5.77 5.77 Total: -1.00 -31.90 382.99 -11.22 -43.12 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -9.15 Total: 2.19 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: -3.13 Total: -0.02 kcal Atomic # 7 Polarization: -57.22 SS G_CDS: 0.23 Total: -57.00 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: 0.09 Total: -10.63 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.03 Total: 16.56 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -31.90 -11.22 -43.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087337672.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.053 kcal (2) G-P(sol) polarization free energy of solvation -31.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.124 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds