Wall clock time and date at job start Wed Apr 1 2020 03:43:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50706 * 109.47190 * 2 1 4 4 C 1.35370 * 126.38232 * 84.99963 * 3 2 1 5 5 C 1.41498 * 105.50219 * 180.02562 * 4 3 2 6 6 C 1.47707 * 126.51764 * 179.97438 * 5 4 3 7 7 O 1.21568 * 120.00160 * 359.97438 * 6 5 4 8 8 N 1.34773 * 119.99963 * 179.97438 * 6 5 4 9 9 C 1.49502 * 125.94559 * 179.97438 * 8 6 5 10 10 C 1.52701 * 103.10233 * 154.38987 * 9 8 6 11 11 H 1.08997 * 111.04648 * 286.17251 * 10 9 8 12 12 C 1.56354 * 97.92287 * 42.80492 * 10 9 8 13 13 H 1.08997 * 101.93746 * 62.06169 * 12 10 9 14 14 C 1.48435 * 103.54243 * 313.65962 * 12 10 9 15 15 C 1.49280 * 107.36689 * 171.86915 * 12 10 9 16 16 H 1.09009 * 114.27042 * 153.36394 * 15 12 10 17 17 C 1.55159 * 108.25500 * 24.22106 * 15 12 10 18 18 C 1.53864 * 108.67915 * 288.55198 * 17 15 12 19 19 C 1.52639 * 119.08444 * 153.35405 * 10 9 8 20 20 H 1.08999 * 114.18280 * 45.48813 * 19 10 9 21 21 C 1.55088 * 109.35492 * 277.47222 * 19 10 9 22 22 N 1.48673 * 106.90437 * 289.23852 * 21 19 10 23 23 C 1.36938 * 123.98072 * 216.37397 * 22 21 19 24 24 H 1.08004 * 119.99799 * 160.22918 * 23 22 21 25 25 C 1.38813 * 120.00033 * 340.23015 * 23 22 21 26 26 N 1.31616 * 120.00163 * 349.78225 * 25 23 22 27 27 Si 1.86805 * 119.99885 * 169.77908 * 25 23 22 28 28 H 1.48495 * 109.46862 * 90.00124 * 27 25 23 29 29 H 1.48499 * 109.46994 * 210.00384 * 27 25 23 30 30 H 1.48501 * 109.46948 * 330.00149 * 27 25 23 31 31 N 1.31816 * 106.96443 * 0.23751 * 5 4 3 32 32 N 1.28469 * 110.06810 * 359.59727 * 31 5 4 33 33 H 0.97002 * 124.87866 * 180.12409 * 32 31 5 34 34 H 1.09001 * 109.46729 * 59.99477 * 1 2 3 35 35 H 1.08997 * 109.47215 * 179.97438 * 1 2 3 36 36 H 1.08996 * 109.46805 * 300.00039 * 1 2 3 37 37 H 1.09002 * 109.47029 * 240.00622 * 2 1 3 38 38 H 1.09000 * 109.47160 * 120.00205 * 2 1 3 39 39 H 1.07997 * 127.24500 * 359.97438 * 4 3 2 40 40 H 1.09003 * 110.72115 * 272.84038 * 9 8 6 41 41 H 1.08998 * 110.72154 * 35.94069 * 9 8 6 42 42 H 1.09000 * 110.44750 * 272.95666 * 14 12 10 43 43 H 1.09001 * 110.44385 * 150.42832 * 14 12 10 44 44 H 1.08998 * 109.60689 * 48.31278 * 17 15 12 45 45 H 1.09004 * 109.60196 * 168.79615 * 17 15 12 46 46 H 1.09003 * 109.85581 * 275.98534 * 18 17 15 47 47 H 1.09003 * 109.90835 * 155.01798 * 18 17 15 48 48 H 1.08997 * 109.96360 * 169.88681 * 21 19 10 49 49 H 1.09004 * 110.04160 * 48.62943 * 21 19 10 50 50 H 0.96999 * 119.99815 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.2105 2.2096 1.0857 5 6 2.6921 3.4416 0.5832 6 6 3.0407 4.6381 1.3760 7 8 2.9220 4.6216 2.5857 8 7 3.4906 5.7482 0.7582 9 6 3.8796 7.0278 1.4262 10 6 4.8734 7.6431 0.4436 11 1 5.8285 7.1187 0.4728 12 6 4.0925 7.3332 -0.8751 13 1 3.1724 7.8992 -0.7305 14 6 3.6878 5.9142 -0.7140 15 6 4.7997 8.0346 -1.9870 16 1 4.6694 7.5700 -2.9645 17 6 6.2767 8.2509 -1.5638 18 6 6.3225 9.3312 -0.4692 19 6 5.0454 9.1595 0.4139 20 1 5.1326 9.6183 1.3988 21 6 3.9251 9.7869 -0.4559 22 7 4.2200 9.4250 -1.8675 23 6 3.9929 10.2539 -2.9336 24 1 4.5039 10.0822 -3.8695 25 6 3.1060 11.3147 -2.8114 26 7 2.3352 11.4091 -1.7487 27 14 3.0066 12.6085 -4.1552 28 1 1.9929 12.2008 -5.1608 29 1 2.6168 13.9118 -3.5596 30 1 4.3312 12.7415 -4.8133 31 7 2.7649 3.3203 -0.7273 32 7 2.3882 2.1447 -1.0829 33 1 2.3593 1.8246 -1.9981 34 1 -0.3633 0.5139 -0.8900 35 1 -0.3633 -1.0276 -0.0005 36 1 -0.3633 0.5138 0.8900 37 1 1.8933 -0.5137 -0.8901 38 1 1.8934 -0.5139 0.8900 39 1 2.0235 1.9528 2.1179 40 1 3.0123 7.6755 1.5538 41 1 4.3575 6.8320 2.3861 42 1 4.4759 5.2507 -1.0698 43 1 2.7568 5.7210 -1.2470 44 1 6.6860 7.3186 -1.1748 45 1 6.8597 8.5778 -2.4248 46 1 6.3266 10.3210 -0.9257 47 1 7.2155 9.2023 0.1425 48 1 3.9279 10.8708 -0.3412 49 1 2.9553 9.3845 -0.1633 50 1 1.7158 12.1506 -1.6632 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087337672.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:43:37 Heat of formation + Delta-G solvation = 92.992928 kcal Electronic energy + Delta-G solvation = -31267.287940 eV Core-core repulsion = 27297.503777 eV Total energy + Delta-G solvation = -3969.784163 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -43.70725 -42.48904 -40.07795 -37.34516 -35.23108 -34.91694 -33.08769 -32.59451 -31.58176 -31.37001 -30.25055 -29.10892 -27.42485 -25.90007 -24.64340 -23.81017 -23.44573 -22.38368 -22.03921 -21.80389 -20.12000 -19.01236 -18.62250 -18.35338 -17.81740 -17.23515 -16.94270 -16.74582 -16.21984 -15.96382 -15.84908 -15.68671 -15.26117 -14.78842 -14.71102 -14.33745 -14.31321 -14.12483 -13.69294 -13.64317 -13.30011 -13.14590 -12.94215 -12.84718 -12.61853 -12.57672 -12.49235 -12.44248 -12.12023 -12.08430 -12.06073 -11.84804 -11.77298 -11.64875 -11.29825 -11.07736 -10.83662 -10.64438 -10.46577 -10.33848 -9.95726 -9.73147 -8.66399 -7.80232 -5.17882 0.49570 1.10941 1.46613 1.47608 1.56366 1.67042 2.08940 2.31199 2.51372 3.13717 3.31795 3.39879 3.45773 3.68420 3.74692 3.90910 3.97362 4.16285 4.23832 4.32131 4.33731 4.43130 4.45401 4.47683 4.52553 4.53760 4.63602 4.70866 4.75743 4.81908 4.86045 4.88334 4.93349 4.98577 5.06896 5.08587 5.09964 5.22059 5.28756 5.32614 5.35517 5.41438 5.45763 5.53316 5.57710 5.72140 5.76028 5.84590 6.11969 6.29891 6.38748 6.78790 7.06053 7.13501 7.80288 8.48531 9.28107 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.015697 B = 0.002816 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1783.352293 B = 9941.970940 C =10699.191102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.049 4.049 3 C 0.037 3.963 4 C -0.199 4.199 5 C -0.034 4.034 6 C 0.610 3.390 7 O -0.576 6.576 8 N -0.612 5.612 9 C 0.118 3.882 10 C -0.084 4.084 11 H 0.105 0.895 12 C -0.143 4.143 13 H 0.052 0.948 14 C 0.160 3.840 15 C 0.179 3.821 16 H 0.083 0.917 17 C -0.113 4.113 18 C -0.089 4.089 19 C -0.100 4.100 20 H 0.096 0.904 21 C 0.194 3.806 22 N -0.615 5.615 23 C -0.232 4.232 24 H 0.074 0.926 25 C -0.062 4.062 26 N -0.947 5.947 27 Si 0.966 3.034 28 H -0.289 1.289 29 H -0.299 1.299 30 H -0.270 1.270 31 N -0.262 5.262 32 N -0.364 5.364 33 H 0.460 0.540 34 H 0.050 0.950 35 H 0.083 0.917 36 H 0.048 0.952 37 H 0.103 0.897 38 H 0.103 0.897 39 H 0.162 0.838 40 H 0.055 0.945 41 H 0.086 0.914 42 H 0.085 0.915 43 H 0.066 0.934 44 H 0.077 0.923 45 H 0.054 0.946 46 H 0.038 0.962 47 H 0.072 0.928 48 H 0.039 0.961 49 H -0.009 1.009 50 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.272 -23.800 1.918 24.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.088 4.088 3 C -0.089 4.089 4 C -0.227 4.227 5 C -0.193 4.193 6 C 0.398 3.602 7 O -0.455 6.455 8 N -0.344 5.344 9 C -0.003 4.003 10 C -0.103 4.103 11 H 0.123 0.877 12 C -0.163 4.163 13 H 0.070 0.930 14 C 0.038 3.962 15 C 0.074 3.926 16 H 0.101 0.899 17 C -0.152 4.152 18 C -0.127 4.127 19 C -0.120 4.120 20 H 0.114 0.886 21 C 0.070 3.930 22 N -0.341 5.341 23 C -0.362 4.362 24 H 0.092 0.908 25 C -0.256 4.256 26 N -0.595 5.595 27 Si 0.795 3.205 28 H -0.217 1.217 29 H -0.226 1.226 30 H -0.195 1.195 31 N -0.100 5.100 32 N -0.081 5.081 33 H 0.309 0.691 34 H 0.070 0.930 35 H 0.102 0.898 36 H 0.067 0.933 37 H 0.121 0.879 38 H 0.122 0.878 39 H 0.179 0.821 40 H 0.073 0.927 41 H 0.104 0.896 42 H 0.103 0.897 43 H 0.085 0.915 44 H 0.095 0.905 45 H 0.072 0.928 46 H 0.057 0.943 47 H 0.090 0.910 48 H 0.058 0.942 49 H 0.009 0.991 50 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 3.353 -23.067 1.631 23.366 hybrid contribution -1.112 0.975 -0.337 1.516 sum 2.241 -22.092 1.294 22.243 Atomic orbital electron populations 1.21789 0.93874 1.03215 1.01904 1.20292 0.96329 0.86264 1.05935 1.21893 1.03063 0.97894 0.86084 1.21652 1.08079 0.92098 1.00902 1.21667 1.10406 0.96624 0.90623 1.16896 0.76469 0.81071 0.85768 1.90735 1.56698 1.83600 1.14473 1.49627 1.63401 1.12349 1.09046 1.22056 0.97822 0.83578 0.96846 1.22460 0.98206 0.95822 0.93789 0.87678 1.21706 1.01297 0.95578 0.97731 0.93005 1.20657 1.01231 0.95427 0.78886 1.21059 0.92175 0.84002 0.95326 0.89938 1.22495 0.96097 0.98499 0.98094 1.22038 0.95842 0.98639 0.96153 1.22557 0.97521 0.93368 0.98544 0.88568 1.21096 0.92175 0.96875 0.82881 1.46270 1.74815 1.11134 1.01884 1.19435 1.17348 1.06442 0.92959 0.90840 1.25658 0.97227 1.02811 0.99920 1.70144 1.26321 1.32363 1.30684 0.85275 0.77826 0.78581 0.78799 1.21672 1.22592 1.19464 1.73664 1.18440 1.03545 1.14316 1.43487 1.46052 1.07602 1.10972 0.69138 0.93041 0.89849 0.93252 0.87897 0.87821 0.82069 0.92694 0.89593 0.89666 0.91520 0.90490 0.92761 0.94277 0.90952 0.94221 0.99097 0.94680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.90 71.98 0.71 -0.47 16 2 C -0.05 -0.35 6.49 29.85 0.19 -0.16 16 3 C 0.04 0.58 6.48 41.41 0.27 0.85 16 4 C -0.20 -4.64 10.73 22.41 0.24 -4.40 16 5 C -0.03 -0.99 6.99 42.45 0.30 -0.70 16 6 C 0.61 21.33 7.88 86.75 0.68 22.01 16 7 O -0.58 -23.08 17.23 -3.93 -0.07 -23.14 16 8 N -0.61 -20.44 3.43 -818.56 -2.81 -23.24 16 9 C 0.12 3.90 6.48 85.70 0.56 4.46 16 10 C -0.08 -2.64 2.48 -9.85 -0.02 -2.66 16 11 H 0.11 2.90 6.50 -2.39 -0.02 2.89 16 12 C -0.14 -5.03 2.38 -12.25 -0.03 -5.06 16 13 H 0.05 2.31 4.60 -2.39 -0.01 2.30 16 14 C 0.16 4.99 5.43 84.36 0.46 5.45 16 15 C 0.18 6.73 4.69 43.64 0.20 6.93 16 16 H 0.08 3.02 8.14 -2.38 -0.02 3.00 16 17 C -0.11 -3.56 5.58 31.63 0.18 -3.38 16 18 C -0.09 -2.96 5.49 32.00 0.18 -2.78 16 19 C -0.10 -3.54 4.21 -9.08 -0.04 -3.58 16 20 H 0.10 3.10 8.14 -2.39 -0.02 3.08 16 21 C 0.19 9.24 4.01 86.68 0.35 9.59 16 22 N -0.62 -29.61 2.14 -659.38 -1.41 -31.02 16 23 C -0.23 -12.49 10.12 84.03 0.85 -11.64 16 24 H 0.07 3.82 7.85 -2.91 -0.02 3.80 16 25 C -0.06 -3.51 5.27 84.86 0.45 -3.06 16 26 N -0.95 -56.81 10.85 21.65 0.24 -56.57 16 27 Si 0.97 45.59 29.57 68.60 2.03 47.62 16 28 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 29 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 30 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 31 N -0.26 -6.53 9.86 -48.18 -0.47 -7.01 16 32 N -0.36 -5.92 6.83 -47.92 -0.33 -6.25 16 33 H 0.46 3.81 8.96 -219.99 -1.97 1.84 16 34 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 35 H 0.08 0.37 8.14 -2.39 -0.02 0.35 16 36 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 37 H 0.10 0.24 8.14 -2.39 -0.02 0.22 16 38 H 0.10 0.57 8.14 -2.39 -0.02 0.56 16 39 H 0.16 3.57 8.06 -2.91 -0.02 3.54 16 40 H 0.05 2.02 8.11 -2.39 -0.02 2.00 16 41 H 0.09 2.67 8.07 -2.39 -0.02 2.65 16 42 H 0.09 2.35 8.00 -2.39 -0.02 2.33 16 43 H 0.07 2.21 7.57 -2.39 -0.02 2.19 16 44 H 0.08 1.99 6.86 -2.39 -0.02 1.97 16 45 H 0.05 1.72 8.14 -2.38 -0.02 1.70 16 46 H 0.04 1.55 7.71 -2.39 -0.02 1.53 16 47 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 48 H 0.04 2.18 6.68 -2.39 -0.02 2.16 16 49 H -0.01 -0.47 6.61 -2.38 -0.02 -0.48 16 50 H 0.24 14.41 8.31 -92.71 -0.77 13.64 16 Total: -1.00 -73.62 382.99 1.68 -71.94 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: -1.01 Total: 16.29 kcal Atomic # 6 Polarization: 5.87 SS G_CDS: 5.52 Total: 11.39 kcal Atomic # 7 Polarization: -119.30 SS G_CDS: -4.79 Total: -124.09 kcal Atomic # 8 Polarization: -23.08 SS G_CDS: -0.07 Total: -23.14 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.62 kcal Total: -73.62 1.68 -71.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087337672.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.928 kcal (2) G-P(sol) polarization free energy of solvation -73.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds