Wall clock time and date at job start Wed Apr 1 2020 02:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.35030 * 126.38416 * 2 1 4 4 H 0.96999 * 124.88635 * 359.93902 * 3 2 1 5 5 N 1.28470 * 110.23055 * 179.97438 * 3 2 1 6 6 C 1.31809 * 110.07331 * 359.97438 * 5 3 2 7 7 C 1.47705 * 126.51742 * 179.97438 * 6 5 3 8 8 O 1.21575 * 120.00293 * 180.02562 * 7 6 5 9 9 N 1.34777 * 120.00287 * 0.02562 * 7 6 5 10 10 C 1.49496 * 125.95001 * 179.71738 * 9 7 6 11 11 C 1.52930 * 102.83468 * 154.45764 * 10 9 7 12 12 H 1.08999 * 111.79615 * 286.13515 * 11 10 9 13 13 C 1.55890 * 98.00794 * 43.09542 * 11 10 9 14 14 H 1.08997 * 101.96571 * 61.84577 * 13 11 10 15 15 C 1.48440 * 103.49510 * 313.45446 * 13 11 10 16 16 C 1.49277 * 107.39653 * 171.68057 * 13 11 10 17 17 H 1.09008 * 114.27301 * 153.32402 * 16 13 11 18 18 C 1.55163 * 108.25997 * 24.17345 * 16 13 11 19 19 C 1.53867 * 108.67713 * 288.56072 * 18 16 13 20 20 C 1.52872 * 118.82710 * 153.73396 * 11 10 9 21 21 H 1.09000 * 114.32650 * 45.38990 * 20 11 10 22 22 C 1.55088 * 109.21807 * 277.37979 * 20 11 10 23 23 N 1.48672 * 106.90511 * 289.31557 * 22 20 11 24 24 C 1.36941 * 123.98158 * 216.39990 * 23 22 20 25 25 H 1.08003 * 120.00082 * 160.18269 * 24 23 22 26 26 C 1.38811 * 119.99821 * 340.17386 * 24 23 22 27 27 N 1.31618 * 120.00114 * 349.79813 * 26 24 23 28 28 Si 1.86797 * 119.99946 * 169.79844 * 26 24 23 29 29 H 1.48505 * 109.47359 * 59.99870 * 28 26 24 30 30 H 1.48505 * 109.47217 * 180.02562 * 28 26 24 31 31 H 1.48505 * 109.47138 * 300.00189 * 28 26 24 32 32 C 1.35364 * 126.38412 * 179.68146 * 2 1 3 33 33 C 1.50699 * 127.25166 * 0.03058 * 32 2 1 34 34 H 1.08995 * 109.46999 * 90.02979 * 1 2 3 35 35 H 1.08995 * 109.47313 * 330.02754 * 1 2 3 36 36 H 1.09004 * 109.47184 * 210.02723 * 1 2 3 37 37 H 1.09002 * 110.71658 * 272.90634 * 10 9 7 38 38 H 1.09005 * 110.71939 * 36.17297 * 10 9 7 39 39 H 1.08999 * 110.43955 * 272.97144 * 15 13 11 40 40 H 1.08996 * 110.44436 * 150.44028 * 15 13 11 41 41 H 1.08999 * 109.60314 * 48.31273 * 18 16 13 42 42 H 1.08998 * 109.60692 * 168.80244 * 18 16 13 43 43 H 1.08997 * 109.85241 * 275.97787 * 19 18 16 44 44 H 1.09005 * 109.90738 * 155.01773 * 19 18 16 45 45 H 1.08996 * 109.96723 * 169.96303 * 22 20 11 46 46 H 1.08997 * 110.03608 * 48.69866 * 22 20 11 47 47 H 0.96995 * 120.00120 * 180.02562 * 27 26 24 48 48 H 1.08993 * 109.47603 * 90.02130 * 33 32 2 49 49 H 1.09005 * 109.46927 * 210.02275 * 33 32 2 50 50 H 1.09003 * 109.46588 * 330.01713 * 33 32 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3080 1.0871 0.0000 4 1 1.9966 2.0057 -0.0008 5 7 3.5420 0.7296 0.0005 6 6 3.6321 -0.5854 0.0015 7 6 4.8765 -1.3811 0.0018 8 8 4.8214 -2.5956 0.0022 9 7 6.0731 -0.7609 0.0016 10 6 7.4092 -1.4314 0.0079 11 6 8.3178 -0.3844 -0.6379 12 1 8.1524 -0.3129 -1.7129 13 6 7.7679 0.8696 0.1072 14 1 7.9945 0.6323 1.1466 15 6 6.2951 0.7171 0.0017 16 6 8.6648 2.0155 -0.2256 17 1 8.1833 2.9919 -0.1712 18 6 9.3616 1.7107 -1.5781 19 6 10.3953 0.5923 -1.3588 20 6 9.8074 -0.3887 -0.2946 21 1 10.2692 -1.3759 -0.3111 22 6 10.0252 0.3660 1.0427 23 7 9.7822 1.8072 0.7703 24 6 10.4881 2.8259 1.3528 25 1 10.4971 3.8055 0.8982 26 6 11.1920 2.5993 2.5276 27 7 11.0235 1.4741 3.1892 28 14 12.3785 3.8915 3.1694 29 1 11.6416 5.1541 3.4305 30 1 12.9997 3.4107 4.4297 31 1 13.4378 4.1368 2.1580 32 6 2.3100 -1.0897 0.0061 33 6 1.8854 -2.5357 0.0135 34 1 -0.3633 -0.0005 -1.0276 35 1 -0.3634 0.8902 0.5134 36 1 -0.3634 -0.8898 0.5143 37 1 7.7283 -1.6458 1.0278 38 1 7.3861 -2.3428 -0.5897 39 1 5.9325 1.1567 -0.9275 40 1 5.8024 1.1761 0.8588 41 1 8.6192 1.3847 -2.3065 42 1 9.8642 2.6073 -1.9408 43 1 11.3297 1.0184 -0.9934 44 1 10.5717 0.0613 -2.2943 45 1 11.0480 0.2201 1.3901 46 1 9.3223 0.0055 1.7937 47 1 11.5150 1.3160 4.0103 48 1 1.7838 -2.8898 -1.0123 49 1 2.6366 -3.1323 0.5311 50 1 0.9287 -2.6307 0.5271 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087345386.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:49:42 Heat of formation + Delta-G solvation = 112.588728 kcal Electronic energy + Delta-G solvation = -31567.553926 eV Core-core repulsion = 27598.619500 eV Total energy + Delta-G solvation = -3968.934426 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.81682 -41.00119 -38.68541 -35.87845 -33.67541 -33.08028 -32.58481 -31.00658 -30.28226 -29.59717 -28.53805 -27.55426 -26.26626 -25.66914 -24.45438 -22.51730 -21.67975 -20.94293 -20.38087 -20.04996 -18.93459 -17.73658 -17.14529 -16.79505 -16.51117 -16.05545 -15.74713 -15.06477 -14.72645 -14.58443 -14.29585 -14.07863 -14.00553 -13.35551 -13.23779 -13.09647 -13.01360 -12.78737 -12.56147 -12.40499 -12.15925 -12.14198 -11.96467 -11.60741 -11.27722 -11.16542 -11.04179 -10.89609 -10.78178 -10.75221 -10.51302 -10.29335 -10.10766 -10.02487 -9.74505 -9.45590 -9.38755 -9.20335 -9.11035 -8.81727 -8.41871 -8.34728 -6.71067 -5.73819 -3.10614 1.58050 1.94813 2.68358 3.12849 3.39579 3.45225 3.45615 3.53441 4.29900 4.45211 4.46239 4.65067 4.77672 5.05089 5.08457 5.12044 5.14032 5.24577 5.42784 5.45574 5.50681 5.57001 5.62639 5.72266 5.74004 5.79759 5.84628 5.89056 5.90439 5.99349 6.02988 6.08313 6.21052 6.25779 6.35895 6.37199 6.40853 6.45276 6.50583 6.54351 6.76672 6.84462 6.86834 6.97662 7.12987 7.19936 7.39698 7.64264 7.68693 7.78870 7.80209 8.28987 8.35572 9.17636 9.78289 10.47657 11.36562 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.016913 B = 0.002918 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.151513 B = 9593.149693 C =10175.433322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.003 3.997 3 N -0.383 5.383 4 H 0.444 0.556 5 N -0.247 5.247 6 C -0.003 4.003 7 C 0.614 3.386 8 O -0.542 6.542 9 N -0.609 5.609 10 C 0.119 3.881 11 C -0.101 4.101 12 H 0.080 0.920 13 C -0.158 4.158 14 H 0.094 0.906 15 C 0.146 3.854 16 C 0.184 3.816 17 H 0.079 0.921 18 C -0.122 4.122 19 C -0.093 4.093 20 C -0.111 4.111 21 H 0.079 0.921 22 C 0.183 3.817 23 N -0.599 5.599 24 C -0.232 4.232 25 H 0.069 0.931 26 C -0.004 4.004 27 N -0.914 5.914 28 Si 0.906 3.094 29 H -0.285 1.285 30 H -0.292 1.292 31 H -0.286 1.286 32 C -0.147 4.147 33 C -0.077 4.077 34 H 0.077 0.923 35 H 0.069 0.931 36 H 0.085 0.915 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.064 0.936 40 H 0.074 0.926 41 H 0.044 0.956 42 H 0.052 0.948 43 H 0.070 0.930 44 H 0.037 0.963 45 H 0.079 0.921 46 H 0.025 0.975 47 H 0.253 0.747 48 H 0.065 0.935 49 H 0.082 0.918 50 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.476 -3.095 -8.820 20.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.122 4.122 3 N -0.097 5.097 4 H 0.288 0.712 5 N -0.083 5.083 6 C -0.164 4.164 7 C 0.401 3.599 8 O -0.418 6.418 9 N -0.343 5.343 10 C -0.002 4.002 11 C -0.121 4.121 12 H 0.099 0.901 13 C -0.177 4.177 14 H 0.112 0.888 15 C 0.024 3.976 16 C 0.078 3.922 17 H 0.097 0.903 18 C -0.161 4.161 19 C -0.131 4.131 20 C -0.131 4.131 21 H 0.098 0.902 22 C 0.058 3.942 23 N -0.325 5.325 24 C -0.361 4.361 25 H 0.087 0.913 26 C -0.201 4.201 27 N -0.560 5.560 28 Si 0.736 3.264 29 H -0.212 1.212 30 H -0.218 1.218 31 H -0.212 1.212 32 C -0.157 4.157 33 C -0.134 4.134 34 H 0.096 0.904 35 H 0.088 0.912 36 H 0.104 0.896 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.082 0.918 40 H 0.092 0.908 41 H 0.063 0.937 42 H 0.070 0.930 43 H 0.088 0.912 44 H 0.056 0.944 45 H 0.098 0.902 46 H 0.042 0.958 47 H 0.063 0.937 48 H 0.084 0.916 49 H 0.101 0.899 50 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -17.755 -2.860 -8.583 19.927 hybrid contribution -0.033 0.706 0.529 0.883 sum -17.788 -2.154 -8.054 19.645 Atomic orbital electron populations 1.20319 0.86716 1.03802 1.03175 1.21177 0.95139 0.87014 1.08910 1.43265 1.03120 1.09389 1.53939 0.71191 1.73748 1.01030 1.14961 1.18514 1.21805 0.94680 0.89646 1.10319 1.16474 0.80693 0.85911 0.76816 1.90746 1.86268 1.12668 1.52137 1.49597 1.05085 1.08348 1.71255 1.22156 0.80792 0.95935 1.01341 1.22584 0.95344 0.94836 0.99287 0.90137 1.21831 0.92786 0.98017 1.05089 0.88787 1.20808 0.95887 0.79121 1.01821 1.20823 0.87276 0.94413 0.89717 0.90328 1.22601 0.97653 0.98120 0.97751 1.22083 0.99258 0.95567 0.96171 1.22742 0.92253 0.98208 0.99884 0.90249 1.21407 1.00904 0.82242 0.89626 1.46028 1.34866 1.01605 1.49974 1.19052 1.22942 0.91484 1.02624 0.91276 1.24943 1.01559 0.97584 0.96022 1.69932 1.43944 1.24943 1.17211 0.86311 0.81126 0.80959 0.77980 1.21156 1.21753 1.21225 1.20092 0.90642 0.96614 1.08319 1.20169 1.01193 0.89860 1.02215 0.90431 0.91209 0.89632 0.90731 0.90627 0.91753 0.90772 0.93715 0.92960 0.91159 0.94393 0.90239 0.95750 0.93680 0.91586 0.89890 0.92179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.43 10.26 36.01 0.37 -0.06 16 2 C 0.00 0.03 7.23 -82.21 -0.59 -0.57 16 3 N -0.38 -3.74 6.83 33.50 0.23 -3.51 16 4 H 0.44 2.64 8.96 -190.44 -1.71 0.93 16 5 N -0.25 -3.35 9.86 33.42 0.33 -3.02 16 6 C 0.00 -0.05 6.99 -82.77 -0.58 -0.63 16 7 C 0.61 10.68 7.88 -12.39 -0.10 10.58 16 8 O -0.54 -10.35 15.43 5.30 0.08 -10.27 16 9 N -0.61 -10.28 3.43 -172.56 -0.59 -10.87 16 10 C 0.12 1.96 6.49 -2.41 -0.02 1.95 16 11 C -0.10 -1.67 2.51 -89.18 -0.22 -1.90 16 12 H 0.08 1.28 6.44 -51.93 -0.33 0.95 16 13 C -0.16 -2.81 2.38 -93.13 -0.22 -3.03 16 14 H 0.09 2.02 4.59 -51.93 -0.24 1.78 16 15 C 0.15 2.36 5.42 -4.62 -0.03 2.34 16 16 C 0.18 3.55 4.69 -66.01 -0.31 3.24 16 17 H 0.08 1.50 8.14 -51.92 -0.42 1.07 16 18 C -0.12 -2.10 5.58 -25.14 -0.14 -2.24 16 19 C -0.09 -1.65 5.48 -24.55 -0.13 -1.78 16 20 C -0.11 -1.99 4.22 -87.85 -0.37 -2.36 16 21 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 22 C 0.18 4.14 4.01 -1.74 -0.01 4.14 16 23 N -0.60 -14.13 2.14 -159.76 -0.34 -14.48 16 24 C -0.23 -6.14 10.12 -15.06 -0.15 -6.29 16 25 H 0.07 1.79 7.85 -52.48 -0.41 1.38 16 26 C 0.00 -0.10 5.27 -17.43 -0.09 -0.19 16 27 N -0.91 -26.08 10.86 55.49 0.60 -25.48 16 28 Si 0.91 21.63 29.57 -169.99 -5.03 16.60 16 29 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 30 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 31 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 32 C -0.15 -1.85 6.25 -104.40 -0.65 -2.50 16 33 C -0.08 -0.84 9.73 36.01 0.35 -0.49 16 34 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 36 H 0.08 0.40 7.30 -51.93 -0.38 0.02 16 37 H 0.07 1.30 8.11 -51.93 -0.42 0.88 16 38 H 0.08 1.20 8.07 -51.93 -0.42 0.78 16 39 H 0.06 0.98 7.99 -51.93 -0.42 0.57 16 40 H 0.07 1.24 7.57 -51.93 -0.39 0.85 16 41 H 0.04 0.69 6.84 -51.93 -0.36 0.34 16 42 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 43 H 0.07 1.42 7.71 -51.93 -0.40 1.02 16 44 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.08 2.05 6.68 -51.93 -0.35 1.70 16 46 H 0.02 0.61 6.61 -51.93 -0.34 0.27 16 47 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 48 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 49 H 0.08 1.09 6.73 -51.93 -0.35 0.74 16 50 H 0.06 0.49 7.31 -51.93 -0.38 0.11 16 LS Contribution 378.02 15.07 5.70 5.70 Total: -1.00 -31.90 378.02 -10.90 -42.80 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -8.99 Total: 2.31 kcal Atomic # 6 Polarization: 3.10 SS G_CDS: -2.89 Total: 0.20 kcal Atomic # 7 Polarization: -57.58 SS G_CDS: 0.23 Total: -57.35 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: 0.08 Total: -10.27 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.03 Total: 16.60 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -31.90 -10.90 -42.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087345386.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.394 kcal (2) G-P(sol) polarization free energy of solvation -31.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds