Wall clock time and date at job start Wed Apr 1 2020 02:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.35030 * 126.38416 * 2 1 4 4 H 0.96999 * 124.88635 * 359.93902 * 3 2 1 5 5 N 1.28470 * 110.23055 * 179.97438 * 3 2 1 6 6 C 1.31809 * 110.07331 * 359.97438 * 5 3 2 7 7 C 1.47705 * 126.51742 * 179.97438 * 6 5 3 8 8 O 1.21575 * 120.00293 * 180.02562 * 7 6 5 9 9 N 1.34777 * 120.00287 * 0.02562 * 7 6 5 10 10 C 1.49496 * 125.95001 * 179.71738 * 9 7 6 11 11 C 1.52930 * 102.83468 * 154.45764 * 10 9 7 12 12 H 1.08999 * 111.79615 * 286.13515 * 11 10 9 13 13 C 1.55890 * 98.00794 * 43.09542 * 11 10 9 14 14 H 1.08997 * 101.96571 * 61.84577 * 13 11 10 15 15 C 1.48440 * 103.49510 * 313.45446 * 13 11 10 16 16 C 1.49277 * 107.39653 * 171.68057 * 13 11 10 17 17 H 1.09008 * 114.27301 * 153.32402 * 16 13 11 18 18 C 1.55163 * 108.25997 * 24.17345 * 16 13 11 19 19 C 1.53867 * 108.67713 * 288.56072 * 18 16 13 20 20 C 1.52872 * 118.82710 * 153.73396 * 11 10 9 21 21 H 1.09000 * 114.32650 * 45.38990 * 20 11 10 22 22 C 1.55088 * 109.21807 * 277.37979 * 20 11 10 23 23 N 1.48672 * 106.90511 * 289.31557 * 22 20 11 24 24 C 1.36941 * 123.98158 * 216.39990 * 23 22 20 25 25 H 1.08003 * 120.00082 * 160.18269 * 24 23 22 26 26 C 1.38811 * 119.99821 * 340.17386 * 24 23 22 27 27 N 1.31618 * 120.00114 * 349.79813 * 26 24 23 28 28 Si 1.86797 * 119.99946 * 169.79844 * 26 24 23 29 29 H 1.48505 * 109.47359 * 59.99870 * 28 26 24 30 30 H 1.48505 * 109.47217 * 180.02562 * 28 26 24 31 31 H 1.48505 * 109.47138 * 300.00189 * 28 26 24 32 32 C 1.35364 * 126.38412 * 179.68146 * 2 1 3 33 33 C 1.50699 * 127.25166 * 0.03058 * 32 2 1 34 34 H 1.08995 * 109.46999 * 90.02979 * 1 2 3 35 35 H 1.08995 * 109.47313 * 330.02754 * 1 2 3 36 36 H 1.09004 * 109.47184 * 210.02723 * 1 2 3 37 37 H 1.09002 * 110.71658 * 272.90634 * 10 9 7 38 38 H 1.09005 * 110.71939 * 36.17297 * 10 9 7 39 39 H 1.08999 * 110.43955 * 272.97144 * 15 13 11 40 40 H 1.08996 * 110.44436 * 150.44028 * 15 13 11 41 41 H 1.08999 * 109.60314 * 48.31273 * 18 16 13 42 42 H 1.08998 * 109.60692 * 168.80244 * 18 16 13 43 43 H 1.08997 * 109.85241 * 275.97787 * 19 18 16 44 44 H 1.09005 * 109.90738 * 155.01773 * 19 18 16 45 45 H 1.08996 * 109.96723 * 169.96303 * 22 20 11 46 46 H 1.08997 * 110.03608 * 48.69866 * 22 20 11 47 47 H 0.96995 * 120.00120 * 180.02562 * 27 26 24 48 48 H 1.08993 * 109.47603 * 90.02130 * 33 32 2 49 49 H 1.09005 * 109.46927 * 210.02275 * 33 32 2 50 50 H 1.09003 * 109.46588 * 330.01713 * 33 32 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3080 1.0871 0.0000 4 1 1.9966 2.0057 -0.0008 5 7 3.5420 0.7296 0.0005 6 6 3.6321 -0.5854 0.0015 7 6 4.8765 -1.3811 0.0018 8 8 4.8214 -2.5956 0.0022 9 7 6.0731 -0.7609 0.0016 10 6 7.4092 -1.4314 0.0079 11 6 8.3178 -0.3844 -0.6379 12 1 8.1524 -0.3129 -1.7129 13 6 7.7679 0.8696 0.1072 14 1 7.9945 0.6323 1.1466 15 6 6.2951 0.7171 0.0017 16 6 8.6648 2.0155 -0.2256 17 1 8.1833 2.9919 -0.1712 18 6 9.3616 1.7107 -1.5781 19 6 10.3953 0.5923 -1.3588 20 6 9.8074 -0.3887 -0.2946 21 1 10.2692 -1.3759 -0.3111 22 6 10.0252 0.3660 1.0427 23 7 9.7822 1.8072 0.7703 24 6 10.4881 2.8259 1.3528 25 1 10.4971 3.8055 0.8982 26 6 11.1920 2.5993 2.5276 27 7 11.0235 1.4741 3.1892 28 14 12.3785 3.8915 3.1694 29 1 11.6416 5.1541 3.4305 30 1 12.9997 3.4107 4.4297 31 1 13.4378 4.1368 2.1580 32 6 2.3100 -1.0897 0.0061 33 6 1.8854 -2.5357 0.0135 34 1 -0.3633 -0.0005 -1.0276 35 1 -0.3634 0.8902 0.5134 36 1 -0.3634 -0.8898 0.5143 37 1 7.7283 -1.6458 1.0278 38 1 7.3861 -2.3428 -0.5897 39 1 5.9325 1.1567 -0.9275 40 1 5.8024 1.1761 0.8588 41 1 8.6192 1.3847 -2.3065 42 1 9.8642 2.6073 -1.9408 43 1 11.3297 1.0184 -0.9934 44 1 10.5717 0.0613 -2.2943 45 1 11.0480 0.2201 1.3901 46 1 9.3223 0.0055 1.7937 47 1 11.5150 1.3160 4.0103 48 1 1.7838 -2.8898 -1.0123 49 1 2.6366 -3.1323 0.5311 50 1 0.9287 -2.6307 0.5271 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087345386.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:49:41 Heat of formation + Delta-G solvation = 93.418119 kcal Electronic energy + Delta-G solvation = -31568.385226 eV Core-core repulsion = 27598.619500 eV Total energy + Delta-G solvation = -3969.765726 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.71723 -42.50181 -40.05638 -37.35460 -34.97727 -34.43138 -33.54753 -32.61146 -31.60901 -31.37593 -29.50385 -28.86967 -27.43612 -26.98807 -25.83107 -23.85888 -23.45587 -22.40487 -21.84592 -20.94097 -20.17522 -18.98683 -18.51927 -18.35144 -17.78760 -17.22178 -17.02294 -16.79952 -16.21330 -15.93966 -15.89019 -15.67036 -14.78605 -14.67732 -14.34414 -14.19392 -13.97386 -13.87229 -13.69614 -13.65833 -13.54017 -13.16683 -13.01868 -12.94629 -12.86655 -12.78302 -12.62637 -12.58450 -12.44603 -12.14107 -12.08899 -11.88984 -11.77237 -11.68803 -11.17128 -11.04270 -10.83157 -10.65427 -10.38151 -10.31850 -9.76536 -9.58630 -8.66946 -7.80466 -5.18398 0.50686 1.09944 1.46615 1.48482 1.54686 1.69030 2.10689 2.31258 2.51164 3.15924 3.31635 3.40947 3.45745 3.73037 3.77616 3.92065 4.01396 4.16145 4.24306 4.30192 4.33208 4.36093 4.45061 4.47422 4.52210 4.63844 4.74775 4.77252 4.85666 4.86238 4.88307 4.91809 4.92945 4.98714 5.03632 5.08998 5.10071 5.16027 5.25147 5.28504 5.34727 5.45059 5.52716 5.55474 5.57157 5.71407 5.75402 5.84113 6.15582 6.29561 6.40468 6.81282 7.08711 7.13072 7.79820 8.48159 9.27700 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.016913 B = 0.002918 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.151513 B = 9593.149693 C =10175.433322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.026 3.974 3 N -0.366 5.366 4 H 0.461 0.539 5 N -0.265 5.265 6 C -0.038 4.038 7 C 0.609 3.391 8 O -0.568 6.568 9 N -0.613 5.613 10 C 0.120 3.880 11 C -0.084 4.084 12 H 0.105 0.895 13 C -0.143 4.143 14 H 0.051 0.949 15 C 0.161 3.839 16 C 0.179 3.821 17 H 0.082 0.918 18 C -0.113 4.113 19 C -0.089 4.089 20 C -0.101 4.101 21 H 0.097 0.903 22 C 0.195 3.805 23 N -0.616 5.616 24 C -0.234 4.234 25 H 0.074 0.926 26 C -0.062 4.062 27 N -0.946 5.946 28 Si 0.967 3.033 29 H -0.278 1.278 30 H -0.300 1.300 31 H -0.279 1.279 32 C -0.174 4.174 33 C -0.072 4.072 34 H 0.095 0.905 35 H 0.092 0.908 36 H 0.095 0.905 37 H 0.055 0.945 38 H 0.086 0.914 39 H 0.083 0.917 40 H 0.065 0.935 41 H 0.076 0.924 42 H 0.054 0.946 43 H 0.038 0.962 44 H 0.072 0.928 45 H 0.039 0.961 46 H -0.009 1.009 47 H 0.244 0.756 48 H 0.069 0.931 49 H 0.053 0.947 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.092 -2.059 -11.315 24.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.100 4.100 3 N -0.083 5.083 4 H 0.309 0.691 5 N -0.102 5.102 6 C -0.197 4.197 7 C 0.397 3.603 8 O -0.446 6.446 9 N -0.346 5.346 10 C -0.001 4.001 11 C -0.103 4.103 12 H 0.123 0.877 13 C -0.162 4.162 14 H 0.070 0.930 15 C 0.039 3.961 16 C 0.074 3.926 17 H 0.100 0.900 18 C -0.152 4.152 19 C -0.127 4.127 20 C -0.121 4.121 21 H 0.115 0.885 22 C 0.070 3.930 23 N -0.341 5.341 24 C -0.364 4.364 25 H 0.091 0.909 26 C -0.255 4.255 27 N -0.595 5.595 28 Si 0.796 3.204 29 H -0.204 1.204 30 H -0.227 1.227 31 H -0.206 1.206 32 C -0.185 4.185 33 C -0.129 4.129 34 H 0.113 0.887 35 H 0.111 0.889 36 H 0.113 0.887 37 H 0.073 0.927 38 H 0.105 0.895 39 H 0.101 0.899 40 H 0.083 0.917 41 H 0.095 0.905 42 H 0.072 0.928 43 H 0.057 0.943 44 H 0.091 0.909 45 H 0.058 0.942 46 H 0.009 0.991 47 H 0.053 0.947 48 H 0.088 0.912 49 H 0.072 0.928 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -20.389 -1.787 -11.115 23.290 hybrid contribution 0.655 0.430 1.319 1.534 sum -19.734 -1.357 -9.796 22.073 Atomic orbital electron populations 1.20533 0.83142 1.05452 1.04786 1.21741 0.96901 0.85651 1.05701 1.43388 1.02222 1.10607 1.52067 0.69091 1.73637 1.02950 1.14293 1.19316 1.21649 0.94618 0.90433 1.12974 1.16885 0.81398 0.85939 0.76063 1.90716 1.86764 1.13828 1.53333 1.49637 1.05135 1.08475 1.71377 1.22091 0.81009 0.96520 1.00504 1.22478 0.93852 0.93739 1.00219 0.87688 1.21614 0.93988 0.98071 1.02565 0.93034 1.20631 0.94240 0.78925 1.02341 1.21056 0.86587 0.95114 0.89810 0.90018 1.22498 0.97961 0.98177 0.96575 1.22037 0.97867 0.95643 0.97119 1.22622 0.93857 0.98635 0.96955 0.88522 1.21095 0.97509 0.82839 0.91565 1.46265 1.36263 1.01352 1.50245 1.19410 1.22472 0.92220 1.02316 0.90863 1.25662 1.03666 0.99451 0.96762 1.70137 1.45136 1.26805 1.17411 0.85336 0.79264 0.78883 0.76932 1.20387 1.22677 1.20571 1.20413 0.90147 0.98142 1.09764 1.20132 1.01626 0.88749 1.02438 0.88659 0.88897 0.88674 0.92685 0.89544 0.89850 0.91711 0.90516 0.92753 0.94309 0.90944 0.94225 0.99121 0.94653 0.91210 0.92834 0.89246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.50 10.26 71.24 0.73 0.23 16 2 C 0.03 0.43 7.23 41.40 0.30 0.73 16 3 N -0.37 -6.21 6.83 -47.93 -0.33 -6.53 16 4 H 0.46 4.03 8.96 -219.99 -1.97 2.06 16 5 N -0.26 -6.83 9.86 -48.18 -0.47 -7.30 16 6 C -0.04 -1.12 6.99 42.46 0.30 -0.83 16 7 C 0.61 21.38 7.88 86.75 0.68 22.06 16 8 O -0.57 -22.23 15.43 -3.95 -0.06 -22.29 16 9 N -0.61 -20.69 3.43 -818.13 -2.80 -23.49 16 10 C 0.12 3.98 6.49 85.77 0.56 4.54 16 11 C -0.08 -2.66 2.51 -9.86 -0.02 -2.69 16 12 H 0.11 2.94 6.44 -2.39 -0.02 2.92 16 13 C -0.14 -5.07 2.38 -12.42 -0.03 -5.10 16 14 H 0.05 2.32 4.59 -2.39 -0.01 2.31 16 15 C 0.16 5.11 5.42 84.36 0.46 5.56 16 16 C 0.18 6.80 4.69 43.64 0.20 7.00 16 17 H 0.08 3.03 8.14 -2.38 -0.02 3.01 16 18 C -0.11 -3.61 5.58 31.63 0.18 -3.43 16 19 C -0.09 -2.98 5.48 32.01 0.18 -2.80 16 20 C -0.10 -3.59 4.22 -9.00 -0.04 -3.63 16 21 H 0.10 3.12 8.14 -2.39 -0.02 3.11 16 22 C 0.19 9.29 4.01 86.68 0.35 9.64 16 23 N -0.62 -29.82 2.14 -659.37 -1.41 -31.23 16 24 C -0.23 -12.69 10.12 84.03 0.85 -11.84 16 25 H 0.07 3.82 7.85 -2.91 -0.02 3.80 16 26 C -0.06 -3.47 5.27 84.86 0.45 -3.03 16 27 N -0.95 -56.94 10.86 21.65 0.24 -56.71 16 28 Si 0.97 45.70 29.57 68.60 2.03 47.72 16 29 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 30 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 31 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 32 C -0.17 -4.16 6.25 -19.72 -0.12 -4.28 16 33 C -0.07 -1.50 9.73 71.24 0.69 -0.81 16 34 H 0.09 0.35 8.14 -2.39 -0.02 0.33 16 35 H 0.09 0.20 8.14 -2.39 -0.02 0.19 16 36 H 0.09 0.48 7.30 -2.39 -0.02 0.46 16 37 H 0.05 2.03 8.11 -2.39 -0.02 2.01 16 38 H 0.09 2.69 8.07 -2.38 -0.02 2.67 16 39 H 0.08 2.37 7.99 -2.39 -0.02 2.35 16 40 H 0.06 2.19 7.57 -2.39 -0.02 2.17 16 41 H 0.08 2.01 6.84 -2.39 -0.02 2.00 16 42 H 0.05 1.73 8.14 -2.39 -0.02 1.72 16 43 H 0.04 1.55 7.71 -2.39 -0.02 1.53 16 44 H 0.07 1.98 8.14 -2.38 -0.02 1.96 16 45 H 0.04 2.18 6.68 -2.39 -0.02 2.16 16 46 H -0.01 -0.48 6.61 -2.39 -0.02 -0.50 16 47 H 0.24 14.49 8.31 -92.71 -0.77 13.72 16 48 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 49 H 0.05 1.43 6.73 -2.38 -0.02 1.42 16 50 H 0.09 1.26 7.31 -2.39 -0.02 1.24 16 Total: -1.00 -74.24 378.02 1.89 -72.35 By element: Atomic # 1 Polarization: 17.14 SS G_CDS: -1.00 Total: 16.14 kcal Atomic # 6 Polarization: 5.63 SS G_CDS: 5.70 Total: 11.34 kcal Atomic # 7 Polarization: -120.48 SS G_CDS: -4.78 Total: -125.26 kcal Atomic # 8 Polarization: -22.23 SS G_CDS: -0.06 Total: -22.29 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.72 kcal Total: -74.24 1.89 -72.35 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087345386.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.764 kcal (2) G-P(sol) polarization free energy of solvation -74.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds