Wall clock time and date at job start Wed Apr 1 2020 02:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.35028 * 126.38766 * 2 1 4 4 H 0.97003 * 124.88575 * 0.02562 * 3 2 1 5 5 N 1.28469 * 110.23274 * 179.72277 * 3 2 1 6 6 C 1.31811 * 110.07011 * 0.45282 * 5 3 2 7 7 C 1.47710 * 126.51885 * 179.81633 * 6 5 3 8 8 O 1.21573 * 120.00016 * 179.69204 * 7 6 5 9 9 N 1.34777 * 119.99649 * 359.96784 * 7 6 5 10 10 C 1.48172 * 127.83286 * 179.72081 * 9 7 6 11 11 C 1.54374 * 104.55484 * 140.30675 * 10 9 7 12 12 H 1.08999 * 110.79875 * 263.94658 * 11 10 9 13 13 C 1.54164 * 104.99851 * 24.13412 * 11 10 9 14 14 H 1.08994 * 111.00769 * 238.98199 * 13 11 10 15 15 C 1.48140 * 127.84091 * 359.40766 * 9 7 6 16 16 C 1.53266 * 109.36032 * 116.23775 * 13 11 10 17 17 H 1.09002 * 110.97311 * 182.40165 * 16 13 11 18 18 C 1.53342 * 108.64216 * 60.70539 * 16 13 11 19 19 C 1.52919 * 109.60178 * 299.39254 * 18 16 13 20 20 C 1.52970 * 109.12213 * 141.77768 * 11 10 9 21 21 H 1.09002 * 109.64608 * 65.64655 * 20 11 10 22 22 C 1.53616 * 109.09018 * 305.56012 * 20 11 10 23 23 N 1.47579 * 106.70612 * 300.29738 * 22 20 11 24 24 C 1.36928 * 122.01209 * 179.97438 * 23 22 20 25 25 H 1.08008 * 119.99976 * 180.02562 * 24 23 22 26 26 C 1.38820 * 120.00323 * 0.02562 * 24 23 22 27 27 N 1.31616 * 119.99717 * 0.02562 * 26 24 23 28 28 Si 1.86801 * 119.99857 * 179.97438 * 26 24 23 29 29 H 1.48499 * 109.47574 * 0.02562 * 28 26 24 30 30 H 1.48506 * 109.46935 * 120.00333 * 28 26 24 31 31 H 1.48498 * 109.46826 * 239.99692 * 28 26 24 32 32 C 1.35365 * 126.38257 * 179.97438 * 2 1 3 33 33 C 1.50702 * 127.25030 * 0.02562 * 32 2 1 34 34 H 1.08997 * 109.47296 * 270.00257 * 1 2 3 35 35 H 1.09006 * 109.46489 * 30.00027 * 1 2 3 36 36 H 1.08999 * 109.46978 * 149.99777 * 1 2 3 37 37 H 1.09001 * 110.41677 * 259.07342 * 10 9 7 38 38 H 1.08997 * 110.41737 * 21.53336 * 10 9 7 39 39 H 1.08998 * 110.39908 * 338.27035 * 15 9 7 40 40 H 1.08995 * 110.40382 * 100.69219 * 15 9 7 41 41 H 1.08996 * 109.44829 * 59.42703 * 18 16 13 42 42 H 1.08995 * 109.45049 * 179.35105 * 18 16 13 43 43 H 1.09000 * 109.37771 * 240.36592 * 19 18 16 44 44 H 1.09000 * 109.38079 * 120.70790 * 19 18 16 45 45 H 1.08996 * 110.00642 * 59.59985 * 22 20 11 46 46 H 1.09009 * 109.99966 * 181.00738 * 22 20 11 47 47 H 0.96993 * 119.99871 * 179.97438 * 27 26 24 48 48 H 1.09002 * 109.46671 * 269.99967 * 33 32 2 49 49 H 1.09002 * 109.47088 * 29.99186 * 33 32 2 50 50 H 1.08994 * 109.46990 * 149.99781 * 33 32 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3081 1.0870 0.0000 4 1 1.9967 2.0057 0.0004 5 7 3.5420 0.7296 0.0058 6 6 3.6321 -0.5854 0.0002 7 6 4.8764 -1.3813 0.0002 8 8 4.8212 -2.5958 0.0002 9 7 6.0730 -0.7611 0.0058 10 6 7.4184 -1.3818 0.0125 11 6 8.2569 -0.5006 -0.9380 12 1 8.2855 -0.9299 -1.9395 13 6 7.5511 0.8700 -0.9381 14 1 7.2372 1.1478 -1.9442 15 6 6.3415 0.6958 0.0003 16 6 8.4913 1.9258 -0.3463 17 1 8.0024 2.8986 -0.2947 18 6 9.7514 2.0030 -1.2166 19 6 10.4549 0.6453 -1.2224 20 6 9.6701 -0.3555 -0.3707 21 1 10.1682 -1.3250 -0.3754 22 6 9.5816 0.1727 1.0691 23 7 8.8958 1.4777 1.0009 24 6 8.6501 2.2279 2.1197 25 1 8.1451 3.1786 2.0322 26 6 9.0502 1.7667 3.3664 27 7 9.6660 0.6084 3.4730 28 14 8.7156 2.7906 4.8925 29 1 8.0158 4.0419 4.5056 30 1 7.8630 2.0170 5.8306 31 1 10.0016 3.1265 5.5548 32 6 2.3100 -1.0898 0.0005 33 6 1.8853 -2.5357 0.0006 34 1 -0.3634 0.0000 1.0276 35 1 -0.3632 0.8901 -0.5139 36 1 -0.3633 -0.8900 -0.5139 37 1 7.8399 -1.3649 1.0175 38 1 7.3674 -2.4040 -0.3624 39 1 5.4798 1.2394 -0.3871 40 1 6.5893 1.0403 1.0042 41 1 9.4728 2.2717 -2.2356 42 1 10.4251 2.7591 -0.8136 43 1 11.4598 0.7569 -0.8152 44 1 10.5202 0.2761 -2.2459 45 1 9.0071 -0.5188 1.6853 46 1 10.5825 0.2988 1.4821 47 1 9.9459 0.2863 4.3440 48 1 1.7826 -2.8841 1.0283 49 1 0.9291 -2.6336 -0.5134 50 1 2.6370 -3.1352 -0.5129 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087345388.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:49:50 Heat of formation + Delta-G solvation = 77.789237 kcal Electronic energy + Delta-G solvation = -32205.975362 eV Core-core repulsion = 28235.531917 eV Total energy + Delta-G solvation = -3970.443445 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.68650 -40.42406 -38.39490 -35.45503 -33.56625 -33.30972 -32.49971 -31.56100 -30.24504 -29.70266 -28.41768 -26.89754 -26.14679 -25.28126 -24.79442 -22.54013 -21.86187 -20.97420 -20.47919 -19.92675 -18.76161 -17.61610 -17.34953 -16.29584 -16.06597 -15.81059 -15.53687 -15.19970 -14.89459 -14.25424 -14.13208 -14.09043 -13.91672 -13.28286 -13.19379 -12.87069 -12.82121 -12.68656 -12.39809 -12.28367 -12.15128 -12.05991 -11.82947 -11.72235 -11.40667 -11.19733 -11.05752 -10.91696 -10.65999 -10.55273 -10.45939 -10.27666 -10.09192 -9.78848 -9.68115 -9.55262 -9.26314 -9.18760 -9.12239 -8.68983 -8.46109 -8.04355 -6.80834 -5.63763 -3.00305 1.72441 2.08331 2.81881 3.40378 3.44204 3.46263 3.48765 3.72181 4.50047 4.51708 4.57066 4.80191 5.06729 5.16615 5.19770 5.22452 5.24312 5.38045 5.53145 5.54368 5.55256 5.68949 5.76846 5.78979 5.84721 5.84999 5.89602 5.97523 6.03827 6.11610 6.14688 6.19913 6.22116 6.39670 6.46778 6.48642 6.51048 6.56492 6.68864 6.71381 6.78325 6.85317 6.90416 7.03406 7.07890 7.13009 7.68079 7.74397 7.88027 7.95652 8.08600 8.35076 8.58225 9.28704 9.89779 10.43805 11.41117 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.011167 B = 0.004052 C = 0.003487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2506.709016 B = 6908.137321 C = 8027.927615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.002 3.998 3 N -0.385 5.385 4 H 0.443 0.557 5 N -0.247 5.247 6 C 0.002 3.998 7 C 0.615 3.385 8 O -0.548 6.548 9 N -0.600 5.600 10 C 0.105 3.895 11 C -0.081 4.081 12 H 0.065 0.935 13 C -0.110 4.110 14 H 0.066 0.934 15 C 0.103 3.897 16 C 0.179 3.821 17 H 0.068 0.932 18 C -0.128 4.128 19 C -0.098 4.098 20 C -0.113 4.113 21 H 0.065 0.935 22 C 0.198 3.802 23 N -0.597 5.597 24 C -0.233 4.233 25 H 0.074 0.926 26 C -0.006 4.006 27 N -0.920 5.920 28 Si 0.904 3.096 29 H -0.282 1.282 30 H -0.293 1.293 31 H -0.292 1.292 32 C -0.148 4.148 33 C -0.076 4.076 34 H 0.077 0.923 35 H 0.068 0.932 36 H 0.084 0.916 37 H 0.095 0.905 38 H 0.069 0.931 39 H 0.086 0.914 40 H 0.101 0.899 41 H 0.046 0.954 42 H 0.059 0.941 43 H 0.055 0.945 44 H 0.044 0.956 45 H 0.057 0.943 46 H 0.050 0.950 47 H 0.250 0.750 48 H 0.066 0.934 49 H 0.058 0.942 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.639 -0.242 -10.596 17.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.123 4.123 3 N -0.098 5.098 4 H 0.287 0.713 5 N -0.082 5.082 6 C -0.159 4.159 7 C 0.402 3.598 8 O -0.425 6.425 9 N -0.331 5.331 10 C -0.017 4.017 11 C -0.100 4.100 12 H 0.084 0.916 13 C -0.131 4.131 14 H 0.085 0.915 15 C -0.020 4.020 16 C 0.070 3.930 17 H 0.086 0.914 18 C -0.168 4.168 19 C -0.136 4.136 20 C -0.133 4.133 21 H 0.083 0.917 22 C 0.074 3.926 23 N -0.321 5.321 24 C -0.362 4.362 25 H 0.092 0.908 26 C -0.202 4.202 27 N -0.568 5.568 28 Si 0.736 3.264 29 H -0.207 1.207 30 H -0.220 1.220 31 H -0.219 1.219 32 C -0.158 4.158 33 C -0.134 4.134 34 H 0.096 0.904 35 H 0.087 0.913 36 H 0.103 0.897 37 H 0.113 0.887 38 H 0.088 0.912 39 H 0.104 0.896 40 H 0.119 0.881 41 H 0.065 0.935 42 H 0.077 0.923 43 H 0.074 0.926 44 H 0.063 0.937 45 H 0.075 0.925 46 H 0.068 0.932 47 H 0.060 0.940 48 H 0.084 0.916 49 H 0.077 0.923 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -13.031 -0.065 -10.370 16.654 hybrid contribution -0.655 0.527 0.886 1.222 sum -13.686 0.462 -9.484 16.657 Atomic orbital electron populations 1.20309 0.86807 1.03634 1.03178 1.21155 0.95064 0.87070 1.09049 1.43303 1.03201 1.09317 1.54025 0.71314 1.73709 1.00783 1.14985 1.18752 1.21844 0.94698 0.89568 1.09824 1.16403 0.80519 0.85826 0.77041 1.90726 1.86249 1.12708 1.52836 1.48762 1.04761 1.09543 1.70007 1.22723 0.80604 0.96454 1.01875 1.21900 0.95320 0.95126 0.97655 0.91639 1.22603 0.95977 0.96644 0.97920 0.91538 1.22811 0.97161 0.79404 1.02583 1.20538 0.91786 0.94653 0.85989 0.91399 1.22029 0.99041 0.97159 0.98544 1.21307 0.98779 0.95493 0.98034 1.21811 0.93668 0.98322 0.99470 0.91669 1.21267 0.97490 0.85956 0.87863 1.44580 1.67240 1.19831 1.00423 1.19278 1.31655 1.00504 0.84722 0.90765 1.24743 1.00814 0.97212 0.97382 1.70018 1.44964 1.19467 1.22400 0.86160 0.77316 0.79236 0.83729 1.20693 1.21995 1.21924 1.20080 0.90666 0.96576 1.08447 1.20162 1.01021 0.89927 1.02259 0.90445 0.91304 0.89710 0.88674 0.91237 0.89635 0.88050 0.93520 0.92260 0.92612 0.93745 0.92510 0.93206 0.93950 0.91568 0.92297 0.89913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.52 10.26 36.01 0.37 -0.15 16 2 C 0.00 0.02 7.23 -82.21 -0.59 -0.57 16 3 N -0.38 -4.35 6.83 33.50 0.23 -4.12 16 4 H 0.44 3.27 8.96 -190.44 -1.71 1.56 16 5 N -0.25 -3.82 9.31 33.42 0.31 -3.50 16 6 C 0.00 0.03 7.01 -82.76 -0.58 -0.55 16 7 C 0.62 12.06 7.92 -12.39 -0.10 11.96 16 8 O -0.55 -11.59 15.38 5.30 0.08 -11.51 16 9 N -0.60 -11.61 3.32 -170.65 -0.57 -12.18 16 10 C 0.11 2.00 6.36 -2.40 -0.02 1.98 16 11 C -0.08 -1.40 3.12 -89.31 -0.28 -1.68 16 12 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 13 C -0.11 -1.92 3.15 -89.31 -0.28 -2.20 16 14 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 15 C 0.10 1.93 6.03 -2.58 -0.02 1.92 16 16 C 0.18 3.41 3.02 -67.00 -0.20 3.21 16 17 H 0.07 1.28 7.99 -51.93 -0.41 0.87 16 18 C -0.13 -2.19 5.85 -26.60 -0.16 -2.34 16 19 C -0.10 -1.65 5.65 -26.74 -0.15 -1.80 16 20 C -0.11 -2.07 2.88 -90.28 -0.26 -2.33 16 21 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 22 C 0.20 4.53 4.01 -3.13 -0.01 4.51 16 23 N -0.60 -13.77 1.97 -163.22 -0.32 -14.10 16 24 C -0.23 -6.04 9.24 -15.06 -0.14 -6.17 16 25 H 0.07 1.89 7.79 -52.48 -0.41 1.48 16 26 C -0.01 -0.15 5.47 -17.43 -0.10 -0.25 16 27 N -0.92 -25.96 9.76 55.49 0.54 -25.41 16 28 Si 0.90 21.81 29.55 -169.99 -5.02 16.79 16 29 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 30 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 31 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 32 C -0.15 -2.09 6.25 -104.40 -0.65 -2.74 16 33 C -0.08 -0.94 9.74 36.01 0.35 -0.59 16 34 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 36 H 0.08 0.48 7.31 -51.93 -0.38 0.10 16 37 H 0.10 2.05 5.28 -51.93 -0.27 1.78 16 38 H 0.07 1.27 7.88 -51.93 -0.41 0.87 16 39 H 0.09 1.51 5.56 -51.93 -0.29 1.22 16 40 H 0.10 2.27 6.31 -51.93 -0.33 1.94 16 41 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.06 1.45 4.86 -51.93 -0.25 1.20 16 46 H 0.05 1.30 7.23 -51.92 -0.38 0.92 16 47 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 48 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 49 H 0.06 0.54 7.31 -51.93 -0.38 0.16 16 50 H 0.08 1.19 6.72 -51.93 -0.35 0.84 16 LS Contribution 373.56 15.07 5.63 5.63 Total: -1.00 -31.66 373.56 -10.86 -42.52 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: -8.93 Total: 3.69 kcal Atomic # 6 Polarization: 5.01 SS G_CDS: -2.81 Total: 2.20 kcal Atomic # 7 Polarization: -59.51 SS G_CDS: 0.19 Total: -59.32 kcal Atomic # 8 Polarization: -11.59 SS G_CDS: 0.08 Total: -11.51 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.66 -10.86 -42.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087345388.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.306 kcal (2) G-P(sol) polarization free energy of solvation -31.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.517 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds