Wall clock time and date at job start Wed Apr 1 2020 02:49:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.35028 * 126.38766 * 2 1 4 4 H 0.97003 * 124.88575 * 0.02562 * 3 2 1 5 5 N 1.28469 * 110.23274 * 179.72277 * 3 2 1 6 6 C 1.31811 * 110.07011 * 0.45282 * 5 3 2 7 7 C 1.47710 * 126.51885 * 179.81633 * 6 5 3 8 8 O 1.21573 * 120.00016 * 179.69204 * 7 6 5 9 9 N 1.34777 * 119.99649 * 359.96784 * 7 6 5 10 10 C 1.48172 * 127.83286 * 179.72081 * 9 7 6 11 11 C 1.54374 * 104.55484 * 140.30675 * 10 9 7 12 12 H 1.08999 * 110.79875 * 263.94658 * 11 10 9 13 13 C 1.54164 * 104.99851 * 24.13412 * 11 10 9 14 14 H 1.08994 * 111.00769 * 238.98199 * 13 11 10 15 15 C 1.48140 * 127.84091 * 359.40766 * 9 7 6 16 16 C 1.53266 * 109.36032 * 116.23775 * 13 11 10 17 17 H 1.09002 * 110.97311 * 182.40165 * 16 13 11 18 18 C 1.53342 * 108.64216 * 60.70539 * 16 13 11 19 19 C 1.52919 * 109.60178 * 299.39254 * 18 16 13 20 20 C 1.52970 * 109.12213 * 141.77768 * 11 10 9 21 21 H 1.09002 * 109.64608 * 65.64655 * 20 11 10 22 22 C 1.53616 * 109.09018 * 305.56012 * 20 11 10 23 23 N 1.47579 * 106.70612 * 300.29738 * 22 20 11 24 24 C 1.36928 * 122.01209 * 179.97438 * 23 22 20 25 25 H 1.08008 * 119.99976 * 180.02562 * 24 23 22 26 26 C 1.38820 * 120.00323 * 0.02562 * 24 23 22 27 27 N 1.31616 * 119.99717 * 0.02562 * 26 24 23 28 28 Si 1.86801 * 119.99857 * 179.97438 * 26 24 23 29 29 H 1.48499 * 109.47574 * 0.02562 * 28 26 24 30 30 H 1.48506 * 109.46935 * 120.00333 * 28 26 24 31 31 H 1.48498 * 109.46826 * 239.99692 * 28 26 24 32 32 C 1.35365 * 126.38257 * 179.97438 * 2 1 3 33 33 C 1.50702 * 127.25030 * 0.02562 * 32 2 1 34 34 H 1.08997 * 109.47296 * 270.00257 * 1 2 3 35 35 H 1.09006 * 109.46489 * 30.00027 * 1 2 3 36 36 H 1.08999 * 109.46978 * 149.99777 * 1 2 3 37 37 H 1.09001 * 110.41677 * 259.07342 * 10 9 7 38 38 H 1.08997 * 110.41737 * 21.53336 * 10 9 7 39 39 H 1.08998 * 110.39908 * 338.27035 * 15 9 7 40 40 H 1.08995 * 110.40382 * 100.69219 * 15 9 7 41 41 H 1.08996 * 109.44829 * 59.42703 * 18 16 13 42 42 H 1.08995 * 109.45049 * 179.35105 * 18 16 13 43 43 H 1.09000 * 109.37771 * 240.36592 * 19 18 16 44 44 H 1.09000 * 109.38079 * 120.70790 * 19 18 16 45 45 H 1.08996 * 110.00642 * 59.59985 * 22 20 11 46 46 H 1.09009 * 109.99966 * 181.00738 * 22 20 11 47 47 H 0.96993 * 119.99871 * 179.97438 * 27 26 24 48 48 H 1.09002 * 109.46671 * 269.99967 * 33 32 2 49 49 H 1.09002 * 109.47088 * 29.99186 * 33 32 2 50 50 H 1.08994 * 109.46990 * 149.99781 * 33 32 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3081 1.0870 0.0000 4 1 1.9967 2.0057 0.0004 5 7 3.5420 0.7296 0.0058 6 6 3.6321 -0.5854 0.0002 7 6 4.8764 -1.3813 0.0002 8 8 4.8212 -2.5958 0.0002 9 7 6.0730 -0.7611 0.0058 10 6 7.4184 -1.3818 0.0125 11 6 8.2569 -0.5006 -0.9380 12 1 8.2855 -0.9299 -1.9395 13 6 7.5511 0.8700 -0.9381 14 1 7.2372 1.1478 -1.9442 15 6 6.3415 0.6958 0.0003 16 6 8.4913 1.9258 -0.3463 17 1 8.0024 2.8986 -0.2947 18 6 9.7514 2.0030 -1.2166 19 6 10.4549 0.6453 -1.2224 20 6 9.6701 -0.3555 -0.3707 21 1 10.1682 -1.3250 -0.3754 22 6 9.5816 0.1727 1.0691 23 7 8.8958 1.4777 1.0009 24 6 8.6501 2.2279 2.1197 25 1 8.1451 3.1786 2.0322 26 6 9.0502 1.7667 3.3664 27 7 9.6660 0.6084 3.4730 28 14 8.7156 2.7906 4.8925 29 1 8.0158 4.0419 4.5056 30 1 7.8630 2.0170 5.8306 31 1 10.0016 3.1265 5.5548 32 6 2.3100 -1.0898 0.0005 33 6 1.8853 -2.5357 0.0006 34 1 -0.3634 0.0000 1.0276 35 1 -0.3632 0.8901 -0.5139 36 1 -0.3633 -0.8900 -0.5139 37 1 7.8399 -1.3649 1.0175 38 1 7.3674 -2.4040 -0.3624 39 1 5.4798 1.2394 -0.3871 40 1 6.5893 1.0403 1.0042 41 1 9.4728 2.2717 -2.2356 42 1 10.4251 2.7591 -0.8136 43 1 11.4598 0.7569 -0.8152 44 1 10.5202 0.2761 -2.2459 45 1 9.0071 -0.5188 1.6853 46 1 10.5825 0.2988 1.4821 47 1 9.9459 0.2863 4.3440 48 1 1.7826 -2.8841 1.0283 49 1 0.9291 -2.6336 -0.5134 50 1 2.6370 -3.1352 -0.5129 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087345388.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:49:49 Heat of formation + Delta-G solvation = 58.656954 kcal Electronic energy + Delta-G solvation = -32206.805000 eV Core-core repulsion = 28235.531917 eV Total energy + Delta-G solvation = -3971.273083 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.72810 -41.95518 -39.91341 -37.02401 -35.20054 -34.44741 -33.61158 -33.11341 -31.65063 -31.52047 -29.34829 -28.41104 -27.16352 -27.00423 -26.21569 -23.90543 -23.63256 -22.52681 -21.89516 -20.95007 -20.16952 -19.16208 -18.63887 -17.68414 -17.44810 -17.26769 -16.91893 -16.83818 -16.45837 -15.91660 -15.80391 -15.50413 -14.78311 -14.59157 -14.45268 -14.00329 -13.91301 -13.88372 -13.85138 -13.57659 -13.46741 -13.27632 -13.12226 -13.01374 -12.94480 -12.86013 -12.61195 -12.53126 -12.38776 -12.20565 -12.05023 -11.80415 -11.67443 -11.59997 -11.21474 -11.01976 -10.73302 -10.64948 -10.47001 -10.36782 -9.69402 -9.56434 -8.74940 -7.69733 -5.05887 0.49953 1.09335 1.43808 1.45159 1.53497 1.79038 2.17845 2.32599 2.53203 3.30299 3.42450 3.61644 3.67565 3.75301 3.80247 3.91691 4.03682 4.24978 4.31350 4.34280 4.37438 4.42960 4.45940 4.54739 4.62563 4.64324 4.69751 4.76029 4.87537 4.90314 4.91034 4.99355 5.01402 5.02148 5.08027 5.09164 5.23108 5.25912 5.26576 5.32277 5.34789 5.43592 5.55952 5.57538 5.61837 5.71275 5.87467 6.00903 6.17185 6.35271 6.56278 6.82083 7.12543 7.24501 7.96498 8.46171 9.32641 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.011167 B = 0.004052 C = 0.003487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2506.709016 B = 6908.137321 C = 8027.927615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.029 3.971 3 N -0.366 5.366 4 H 0.461 0.539 5 N -0.268 5.268 6 C -0.035 4.035 7 C 0.607 3.393 8 O -0.574 6.574 9 N -0.605 5.605 10 C 0.105 3.895 11 C -0.070 4.070 12 H 0.097 0.903 13 C -0.101 4.101 14 H 0.101 0.899 15 C 0.114 3.886 16 C 0.172 3.828 17 H 0.070 0.930 18 C -0.122 4.122 19 C -0.095 4.095 20 C -0.106 4.106 21 H 0.075 0.925 22 C 0.211 3.789 23 N -0.608 5.608 24 C -0.225 4.225 25 H 0.079 0.921 26 C -0.065 4.065 27 N -0.948 5.948 28 Si 0.958 3.042 29 H -0.266 1.266 30 H -0.304 1.304 31 H -0.297 1.297 32 C -0.176 4.176 33 C -0.071 4.071 34 H 0.091 0.909 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.059 0.941 38 H 0.073 0.927 39 H 0.100 0.900 40 H 0.058 0.942 41 H 0.085 0.915 42 H 0.044 0.956 43 H 0.045 0.955 44 H 0.080 0.920 45 H 0.020 0.980 46 H 0.008 0.992 47 H 0.239 0.761 48 H 0.063 0.937 49 H 0.094 0.906 50 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.240 1.323 -13.546 21.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.098 4.098 3 N -0.083 5.083 4 H 0.309 0.691 5 N -0.105 5.105 6 C -0.194 4.194 7 C 0.396 3.604 8 O -0.454 6.454 9 N -0.336 5.336 10 C -0.017 4.017 11 C -0.089 4.089 12 H 0.115 0.885 13 C -0.122 4.122 14 H 0.119 0.881 15 C -0.009 4.009 16 C 0.065 3.935 17 H 0.088 0.912 18 C -0.161 4.161 19 C -0.132 4.132 20 C -0.126 4.126 21 H 0.093 0.907 22 C 0.087 3.913 23 N -0.331 5.331 24 C -0.356 4.356 25 H 0.097 0.903 26 C -0.257 4.257 27 N -0.599 5.599 28 Si 0.789 3.211 29 H -0.190 1.190 30 H -0.233 1.233 31 H -0.225 1.225 32 C -0.186 4.186 33 C -0.129 4.129 34 H 0.109 0.891 35 H 0.114 0.886 36 H 0.116 0.884 37 H 0.077 0.923 38 H 0.091 0.909 39 H 0.118 0.882 40 H 0.076 0.924 41 H 0.103 0.897 42 H 0.063 0.937 43 H 0.064 0.936 44 H 0.099 0.901 45 H 0.038 0.962 46 H 0.026 0.974 47 H 0.048 0.952 48 H 0.081 0.919 49 H 0.112 0.888 50 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -15.642 1.554 -13.362 20.631 hybrid contribution 0.014 0.082 1.820 1.822 sum -15.628 1.636 -11.542 19.496 Atomic orbital electron populations 1.20541 0.82922 1.05696 1.04658 1.21762 0.96947 0.85551 1.05546 1.43415 1.02215 1.10620 1.52035 0.69118 1.73555 1.02912 1.14329 1.19727 1.21665 0.94627 0.90400 1.12693 1.16914 0.81345 0.85939 0.76234 1.90689 1.86813 1.13894 1.53979 1.48870 1.04856 1.09730 1.70137 1.22609 0.81176 0.97369 1.00559 1.21889 0.93868 0.94817 0.98349 0.88487 1.22573 0.94710 0.95969 0.98948 0.88100 1.22604 0.98420 0.79219 1.00650 1.20815 0.93267 0.95155 0.84308 0.91173 1.21953 0.97317 0.96964 0.99899 1.21298 0.97703 0.94809 0.99426 1.21698 0.95068 0.99213 0.96576 0.90652 1.20820 0.94380 0.85582 0.90516 1.44771 1.67075 1.19668 1.01632 1.19610 1.29702 1.00459 0.85785 0.90331 1.25406 1.02048 0.98368 0.99901 1.70259 1.46798 1.20995 1.21849 0.85285 0.76640 0.78426 0.80732 1.19000 1.23255 1.22455 1.20423 0.90008 0.98254 1.09889 1.20129 1.01844 0.88707 1.02181 0.89062 0.88560 0.88369 0.92256 0.90900 0.88243 0.92373 0.89696 0.93673 0.93631 0.90096 0.96191 0.97407 0.95151 0.91868 0.88763 0.92635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.66 10.26 71.24 0.73 0.08 16 2 C 0.03 0.54 7.23 41.40 0.30 0.84 16 3 N -0.37 -7.38 6.83 -47.93 -0.33 -7.70 16 4 H 0.46 5.33 8.96 -219.99 -1.97 3.36 16 5 N -0.27 -8.03 9.31 -48.18 -0.45 -8.48 16 6 C -0.03 -1.19 7.01 42.46 0.30 -0.89 16 7 C 0.61 24.52 7.92 86.75 0.69 25.20 16 8 O -0.57 -25.34 15.38 -3.95 -0.06 -25.40 16 9 N -0.61 -24.00 3.32 -812.09 -2.70 -26.70 16 10 C 0.10 4.12 6.36 86.52 0.55 4.67 16 11 C -0.07 -2.33 3.12 -9.94 -0.03 -2.36 16 12 H 0.10 2.72 8.14 -2.39 -0.02 2.70 16 13 C -0.10 -3.32 3.15 -9.95 -0.03 -3.35 16 14 H 0.10 2.74 8.14 -2.39 -0.02 2.72 16 15 C 0.11 4.27 6.03 86.43 0.52 4.80 16 16 C 0.17 6.29 3.02 44.98 0.14 6.43 16 17 H 0.07 2.53 7.99 -2.39 -0.02 2.51 16 18 C -0.12 -3.82 5.85 30.68 0.18 -3.64 16 19 C -0.09 -2.94 5.65 30.59 0.17 -2.77 16 20 C -0.11 -3.83 2.88 -10.57 -0.03 -3.86 16 21 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 22 C 0.21 10.15 4.01 86.38 0.35 10.50 16 23 N -0.61 -28.75 1.97 -670.30 -1.32 -30.07 16 24 C -0.23 -12.05 9.24 84.04 0.78 -11.27 16 25 H 0.08 4.04 7.79 -2.91 -0.02 4.01 16 26 C -0.06 -3.65 5.47 84.86 0.46 -3.19 16 27 N -0.95 -56.95 9.76 21.65 0.21 -56.74 16 28 Si 0.96 46.48 29.55 68.60 2.03 48.51 16 29 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 30 H -0.30 -15.21 7.11 99.48 0.71 -14.50 16 31 H -0.30 -14.51 7.11 99.48 0.71 -13.81 16 32 C -0.18 -4.77 6.25 -19.72 -0.12 -4.90 16 33 C -0.07 -1.69 9.74 71.24 0.69 -1.00 16 34 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.10 0.33 8.14 -2.38 -0.02 0.31 16 36 H 0.10 0.63 7.31 -2.39 -0.02 0.61 16 37 H 0.06 2.77 5.28 -2.39 -0.01 2.76 16 38 H 0.07 2.75 7.88 -2.39 -0.02 2.73 16 39 H 0.10 3.44 5.56 -2.39 -0.01 3.43 16 40 H 0.06 2.70 6.31 -2.39 -0.02 2.69 16 41 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 42 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 43 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 44 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 45 H 0.02 1.12 4.86 -2.39 -0.01 1.10 16 46 H 0.01 0.43 7.23 -2.38 -0.02 0.42 16 47 H 0.24 14.25 8.31 -92.71 -0.77 13.48 16 48 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 49 H 0.09 1.49 7.31 -2.39 -0.02 1.47 16 50 H 0.05 1.62 6.72 -2.39 -0.02 1.61 16 Total: -1.00 -75.39 373.56 2.03 -73.36 By element: Atomic # 1 Polarization: 18.93 SS G_CDS: -1.00 Total: 17.93 kcal Atomic # 6 Polarization: 9.65 SS G_CDS: 5.64 Total: 15.29 kcal Atomic # 7 Polarization: -125.10 SS G_CDS: -4.58 Total: -129.69 kcal Atomic # 8 Polarization: -25.34 SS G_CDS: -0.06 Total: -25.40 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 2.03 Total: 48.51 kcal Total: -75.39 2.03 -73.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087345388.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.020 kcal (2) G-P(sol) polarization free energy of solvation -75.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.363 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds