Wall clock time and date at job start Wed Apr 1 2020 02:50:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.35362 * 127.24703 * 2 1 4 4 N 1.35029 * 107.22751 * 179.97438 * 3 2 1 5 5 C 1.46506 * 124.88471 * 179.97438 * 4 3 2 6 6 N 1.28468 * 110.23386 * 359.72831 * 4 3 2 7 7 C 1.31816 * 110.07044 * 0.45278 * 6 4 3 8 8 C 1.47700 * 126.51896 * 179.81796 * 7 6 4 9 9 O 1.21574 * 120.00323 * 179.68998 * 8 7 6 10 10 N 1.34776 * 120.00221 * 359.69539 * 8 7 6 11 11 C 1.49802 * 125.80204 * 179.97438 * 10 8 7 12 12 C 1.48547 * 101.94857 * 202.38897 * 11 10 8 13 13 H 1.09006 * 104.19888 * 62.27598 * 12 11 10 14 14 C 1.56248 * 102.71865 * 316.88171 * 12 11 10 15 15 H 1.08999 * 112.95925 * 288.38373 * 14 12 11 16 16 C 1.48806 * 125.79945 * 0.02562 * 10 8 7 17 17 C 1.53276 * 102.48317 * 167.44380 * 14 12 11 18 18 H 1.09001 * 113.70481 * 208.95385 * 17 14 12 19 19 C 1.55494 * 103.08742 * 83.80450 * 17 14 12 20 20 C 1.53804 * 107.50428 * 322.90106 * 19 17 14 21 21 C 1.49237 * 131.85855 * 186.40671 * 12 11 10 22 22 H 1.09003 * 113.99145 * 338.09606 * 21 12 11 23 23 C 1.57359 * 101.87889 * 213.86281 * 21 12 11 24 24 N 1.48608 * 108.34580 * 337.02562 * 17 14 12 25 25 C 1.36929 * 122.40122 * 253.70838 * 24 17 14 26 26 H 1.08001 * 120.00332 * 21.76710 * 25 24 17 27 27 C 1.38815 * 120.00130 * 201.76244 * 25 24 17 28 28 N 1.31621 * 119.99506 * 10.45047 * 27 25 24 29 29 Si 1.86798 * 120.00260 * 190.44798 * 27 25 24 30 30 H 1.48500 * 109.47171 * 60.00363 * 29 27 25 31 31 H 1.48496 * 109.46952 * 180.02562 * 29 27 25 32 32 H 1.48505 * 109.47205 * 299.99971 * 29 27 25 33 33 H 1.08995 * 109.47055 * 270.00114 * 1 2 3 34 34 H 1.08995 * 109.47153 * 29.99968 * 1 2 3 35 35 H 1.08999 * 109.46561 * 149.99594 * 1 2 3 36 36 H 1.08002 * 126.38432 * 0.02562 * 3 2 1 37 37 H 1.08999 * 109.46762 * 90.00233 * 5 4 3 38 38 H 1.08998 * 109.46819 * 210.00008 * 5 4 3 39 39 H 1.08997 * 109.46952 * 330.00050 * 5 4 3 40 40 H 1.08997 * 110.93529 * 320.55531 * 11 10 8 41 41 H 1.08999 * 110.93668 * 84.19533 * 11 10 8 42 42 H 1.08994 * 110.21962 * 68.51856 * 16 10 8 43 43 H 1.09005 * 110.21834 * 306.58274 * 16 10 8 44 44 H 1.09005 * 110.20518 * 203.11041 * 19 17 14 45 45 H 1.08994 * 109.33321 * 82.20063 * 19 17 14 46 46 H 1.09000 * 109.49294 * 205.16910 * 20 19 17 47 47 H 1.08993 * 109.49281 * 85.08204 * 20 19 17 48 48 H 1.09002 * 110.58456 * 83.29693 * 23 21 12 49 49 H 1.08994 * 110.58305 * 206.24669 * 23 21 12 50 50 H 0.97006 * 119.99933 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3264 1.0775 0.0000 4 7 3.5951 0.6153 0.0006 5 6 4.7938 1.4576 0.0002 6 7 3.5999 -0.6694 0.0066 7 6 2.3635 -1.1264 0.0006 8 6 1.9506 -2.5445 0.0007 9 8 0.7698 -2.8339 0.0004 10 7 2.8829 -3.5179 0.0014 11 6 2.6116 -4.9911 0.0021 12 6 3.8774 -5.5366 0.5561 13 1 3.9343 -5.1138 1.5592 14 6 4.9674 -4.7034 -0.1916 15 1 5.0599 -4.9715 -1.2440 16 6 4.3566 -3.3116 0.0025 17 6 6.2368 -5.0296 0.6031 18 1 6.9772 -4.2297 0.5941 19 6 6.7109 -6.3705 -0.0256 20 6 5.4558 -7.1960 -0.3555 21 6 4.3688 -6.9354 0.7262 22 1 3.5767 -7.6840 0.7465 23 6 5.2066 -6.8252 2.0536 24 7 5.8359 -5.4723 1.9639 25 6 5.9973 -4.6814 3.0700 26 1 6.0874 -3.6108 2.9599 27 6 6.0451 -5.2557 4.3329 28 7 6.1427 -6.5623 4.4584 29 14 5.9710 -4.1742 5.8542 30 1 4.6983 -3.4091 5.8561 31 1 6.0397 -5.0244 7.0697 32 1 7.1167 -3.2294 5.8462 33 1 -0.3633 0.0000 1.0276 34 1 -0.3633 0.8899 -0.5138 35 1 -0.3632 -0.8900 -0.5139 36 1 2.0220 2.1138 0.0004 37 1 5.0908 1.6671 1.0278 38 1 5.6028 0.9379 -0.5131 39 1 4.5794 2.3943 -0.5143 40 1 1.7679 -5.2314 0.6489 41 1 2.4399 -5.3561 -1.0105 42 1 4.6770 -2.8886 0.9545 43 1 4.6458 -2.6556 -0.8186 44 1 7.3392 -6.9153 0.6791 45 1 7.2698 -6.1634 -0.9381 46 1 5.7103 -8.2558 -0.3675 47 1 5.0738 -6.9021 -1.3331 48 1 4.5568 -6.9074 2.9249 49 1 5.9844 -7.5884 2.0803 50 1 6.1765 -6.9636 5.3409 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087357963.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:50:23 Heat of formation + Delta-G solvation = 125.307288 kcal Electronic energy + Delta-G solvation = -32181.599826 eV Core-core repulsion = 28213.216918 eV Total energy + Delta-G solvation = -3968.382908 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.62582 -40.83703 -38.58366 -35.77554 -33.90398 -33.14160 -32.05177 -31.03524 -30.11616 -29.74054 -28.27878 -27.37905 -26.39356 -25.20064 -23.89398 -22.01886 -21.71787 -20.92180 -20.50029 -20.15434 -19.01332 -17.43012 -17.02315 -16.71695 -16.32867 -16.27573 -15.68200 -14.99064 -14.66470 -14.51415 -14.26833 -14.13123 -13.63204 -13.45804 -13.34199 -12.96082 -12.68905 -12.64013 -12.47288 -12.37201 -12.30314 -12.09208 -12.06157 -11.54492 -11.31308 -11.14021 -10.98656 -10.88755 -10.72464 -10.61302 -10.56816 -10.26471 -10.01637 -9.87860 -9.64004 -9.63369 -9.20697 -9.10667 -8.91456 -8.73843 -8.45657 -8.18535 -6.69595 -5.76565 -3.14724 1.73257 2.12780 2.43468 3.26295 3.38255 3.44189 3.45588 3.68555 4.29109 4.47568 4.67052 4.73892 4.87274 4.95149 5.06901 5.14766 5.22417 5.28164 5.38207 5.46028 5.52137 5.57581 5.69120 5.78468 5.80443 5.82479 5.82962 5.95114 5.97850 6.02324 6.11442 6.19800 6.21251 6.34094 6.38345 6.45417 6.48147 6.53973 6.57295 6.63184 6.75243 6.76907 6.92921 6.98923 7.09599 7.35649 7.47344 7.64293 7.80285 7.84789 7.95972 8.31849 8.50856 9.16991 9.80031 10.40851 11.33855 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.010314 B = 0.004261 C = 0.003653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2714.146760 B = 6569.391337 C = 7662.471438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.148 4.148 3 C -0.029 4.029 4 N -0.288 5.288 5 C 0.089 3.911 6 N -0.248 5.248 7 C -0.009 4.009 8 C 0.615 3.385 9 O -0.545 6.545 10 N -0.606 5.606 11 C 0.142 3.858 12 C -0.140 4.140 13 H 0.106 0.894 14 C -0.130 4.130 15 H 0.077 0.923 16 C 0.128 3.872 17 C 0.180 3.820 18 H 0.080 0.920 19 C -0.129 4.129 20 C -0.106 4.106 21 C -0.095 4.095 22 H 0.079 0.921 23 C 0.190 3.810 24 N -0.593 5.593 25 C -0.245 4.245 26 H 0.065 0.935 27 C 0.003 3.997 28 N -0.910 5.910 29 Si 0.900 3.100 30 H -0.286 1.286 31 H -0.290 1.290 32 H -0.285 1.285 33 H 0.065 0.935 34 H 0.058 0.942 35 H 0.082 0.918 36 H 0.178 0.822 37 H 0.084 0.916 38 H 0.097 0.903 39 H 0.093 0.907 40 H 0.074 0.926 41 H 0.058 0.942 42 H 0.076 0.924 43 H 0.064 0.936 44 H 0.071 0.929 45 H 0.045 0.955 46 H 0.050 0.950 47 H 0.049 0.951 48 H 0.071 0.929 49 H 0.037 0.963 50 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.563 11.819 -12.189 17.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.158 4.158 3 C -0.171 4.171 4 N -0.076 5.076 5 C -0.052 4.052 6 N -0.084 5.084 7 C -0.169 4.169 8 C 0.401 3.599 9 O -0.422 6.422 10 N -0.339 5.339 11 C 0.021 3.979 12 C -0.159 4.159 13 H 0.124 0.876 14 C -0.151 4.151 15 H 0.095 0.905 16 C 0.006 3.994 17 C 0.072 3.928 18 H 0.098 0.902 19 C -0.167 4.167 20 C -0.144 4.144 21 C -0.115 4.115 22 H 0.097 0.903 23 C 0.066 3.934 24 N -0.316 5.316 25 C -0.375 4.375 26 H 0.082 0.918 27 C -0.195 4.195 28 N -0.555 5.555 29 Si 0.731 3.269 30 H -0.213 1.213 31 H -0.216 1.216 32 H -0.211 1.211 33 H 0.084 0.916 34 H 0.077 0.923 35 H 0.100 0.900 36 H 0.195 0.805 37 H 0.103 0.897 38 H 0.115 0.885 39 H 0.111 0.889 40 H 0.093 0.907 41 H 0.076 0.924 42 H 0.094 0.906 43 H 0.082 0.918 44 H 0.090 0.910 45 H 0.064 0.936 46 H 0.069 0.931 47 H 0.067 0.933 48 H 0.090 0.910 49 H 0.055 0.945 50 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -2.939 11.401 -11.935 16.764 hybrid contribution -0.613 1.110 0.951 1.585 sum -3.552 12.510 -10.984 17.023 Atomic orbital electron populations 1.20146 0.88244 1.02748 1.02278 1.20360 0.97385 0.90489 1.07598 1.22551 0.83853 1.00311 1.10424 1.45338 1.06947 1.03995 1.51282 1.22146 0.84925 0.93596 1.04522 1.73737 1.23138 0.93196 1.18341 1.21821 0.89395 0.94905 1.10824 1.16475 0.84508 0.82108 0.76760 1.90728 1.16496 1.82569 1.52450 1.49463 1.07323 1.06116 1.71028 1.20883 0.98208 0.78546 1.00235 1.21140 0.92225 0.97425 1.05127 0.87639 1.23506 0.98774 0.93675 0.99169 0.90465 1.21990 0.77975 0.97420 1.02031 1.21358 0.92045 0.94155 0.85238 0.90182 1.22691 0.97033 0.97663 0.99324 1.22168 0.95702 0.98759 0.97779 1.22100 0.96494 0.93634 0.99284 0.90306 1.22302 0.93360 0.85893 0.91892 1.45438 1.68764 1.16186 1.01193 1.19082 1.44184 0.89454 0.84737 0.91751 1.24912 1.01128 0.95683 0.97738 1.69942 1.54786 1.08603 1.22210 0.86396 0.77954 0.79619 0.82944 1.21259 1.21628 1.21117 0.91591 0.92293 0.89959 0.80466 0.89706 0.88465 0.88862 0.90738 0.92361 0.90572 0.91765 0.91037 0.93611 0.93071 0.93263 0.91038 0.94522 0.93656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.94 9.93 36.01 0.36 -0.59 16 2 C -0.15 -2.11 6.25 -104.40 -0.65 -2.76 16 3 C -0.03 -0.33 11.40 -17.17 -0.20 -0.52 16 4 N -0.29 -3.44 3.70 -68.13 -0.25 -3.69 16 5 C 0.09 0.61 11.31 59.85 0.68 1.28 16 6 N -0.25 -3.89 9.53 33.42 0.32 -3.57 16 7 C -0.01 -0.16 6.98 -82.77 -0.58 -0.74 16 8 C 0.61 11.78 7.88 -12.40 -0.10 11.69 16 9 O -0.55 -11.30 15.46 5.30 0.08 -11.22 16 10 N -0.61 -11.21 3.41 -172.62 -0.59 -11.79 16 11 C 0.14 2.50 6.81 -4.37 -0.03 2.47 16 12 C -0.14 -2.57 2.41 -92.90 -0.22 -2.79 16 13 H 0.11 2.40 5.14 -51.93 -0.27 2.13 16 14 C -0.13 -2.23 2.67 -88.62 -0.24 -2.46 16 15 H 0.08 1.22 6.73 -51.93 -0.35 0.87 16 16 C 0.13 2.24 5.08 -2.65 -0.01 2.23 16 17 C 0.18 3.45 4.26 -65.30 -0.28 3.17 16 18 H 0.08 1.53 8.14 -51.93 -0.42 1.10 16 19 C -0.13 -2.22 5.43 -24.99 -0.14 -2.36 16 20 C -0.11 -1.71 5.29 -24.95 -0.13 -1.84 16 21 C -0.09 -1.71 4.52 -88.74 -0.40 -2.11 16 22 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 23 C 0.19 4.29 4.00 -0.01 0.00 4.29 16 24 N -0.59 -13.79 1.73 -157.28 -0.27 -14.06 16 25 C -0.25 -6.47 9.65 -15.06 -0.15 -6.62 16 26 H 0.06 1.70 7.85 -52.49 -0.41 1.29 16 27 C 0.00 0.09 5.20 -17.43 -0.09 0.00 16 28 N -0.91 -25.77 10.89 55.49 0.60 -25.17 16 29 Si 0.90 21.93 29.57 -169.99 -5.03 16.90 16 30 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 31 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 32 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.08 1.17 6.72 -51.93 -0.35 0.82 16 36 H 0.18 1.22 8.06 -52.49 -0.42 0.79 16 37 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.09 0.33 8.13 -51.93 -0.42 -0.09 16 40 H 0.07 1.36 8.13 -51.93 -0.42 0.93 16 41 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 42 H 0.08 1.53 8.01 -51.93 -0.42 1.12 16 43 H 0.06 1.06 7.34 -51.93 -0.38 0.68 16 44 H 0.07 1.41 7.22 -51.93 -0.38 1.03 16 45 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 47 H 0.05 0.72 7.00 -51.93 -0.36 0.36 16 48 H 0.07 1.84 6.86 -51.93 -0.36 1.49 16 49 H 0.04 0.89 7.09 -51.93 -0.37 0.52 16 50 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 380.54 15.07 5.73 5.73 Total: -1.00 -32.34 380.54 -9.42 -41.76 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -7.84 Total: 2.77 kcal Atomic # 6 Polarization: 4.52 SS G_CDS: -2.18 Total: 2.34 kcal Atomic # 7 Polarization: -58.09 SS G_CDS: -0.19 Total: -58.28 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: 0.08 Total: -11.22 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.03 Total: 16.90 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.34 -9.42 -41.76 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087357963.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.064 kcal (2) G-P(sol) polarization free energy of solvation -32.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.757 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds