Wall clock time and date at job start Wed Apr 1 2020 02:50:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.35362 * 127.24703 * 2 1 4 4 N 1.35029 * 107.22751 * 179.97438 * 3 2 1 5 5 C 1.46506 * 124.88471 * 179.97438 * 4 3 2 6 6 N 1.28468 * 110.23386 * 359.72831 * 4 3 2 7 7 C 1.31816 * 110.07044 * 0.45278 * 6 4 3 8 8 C 1.47700 * 126.51896 * 179.81796 * 7 6 4 9 9 O 1.21574 * 120.00323 * 179.68998 * 8 7 6 10 10 N 1.34776 * 120.00221 * 359.69539 * 8 7 6 11 11 C 1.49802 * 125.80204 * 179.97438 * 10 8 7 12 12 C 1.48547 * 101.94857 * 202.38897 * 11 10 8 13 13 H 1.09006 * 104.19888 * 62.27598 * 12 11 10 14 14 C 1.56248 * 102.71865 * 316.88171 * 12 11 10 15 15 H 1.08999 * 112.95925 * 288.38373 * 14 12 11 16 16 C 1.48806 * 125.79945 * 0.02562 * 10 8 7 17 17 C 1.53276 * 102.48317 * 167.44380 * 14 12 11 18 18 H 1.09001 * 113.70481 * 208.95385 * 17 14 12 19 19 C 1.55494 * 103.08742 * 83.80450 * 17 14 12 20 20 C 1.53804 * 107.50428 * 322.90106 * 19 17 14 21 21 C 1.49237 * 131.85855 * 186.40671 * 12 11 10 22 22 H 1.09003 * 113.99145 * 338.09606 * 21 12 11 23 23 C 1.57359 * 101.87889 * 213.86281 * 21 12 11 24 24 N 1.48608 * 108.34580 * 337.02562 * 17 14 12 25 25 C 1.36929 * 122.40122 * 253.70838 * 24 17 14 26 26 H 1.08001 * 120.00332 * 21.76710 * 25 24 17 27 27 C 1.38815 * 120.00130 * 201.76244 * 25 24 17 28 28 N 1.31621 * 119.99506 * 10.45047 * 27 25 24 29 29 Si 1.86798 * 120.00260 * 190.44798 * 27 25 24 30 30 H 1.48500 * 109.47171 * 60.00363 * 29 27 25 31 31 H 1.48496 * 109.46952 * 180.02562 * 29 27 25 32 32 H 1.48505 * 109.47205 * 299.99971 * 29 27 25 33 33 H 1.08995 * 109.47055 * 270.00114 * 1 2 3 34 34 H 1.08995 * 109.47153 * 29.99968 * 1 2 3 35 35 H 1.08999 * 109.46561 * 149.99594 * 1 2 3 36 36 H 1.08002 * 126.38432 * 0.02562 * 3 2 1 37 37 H 1.08999 * 109.46762 * 90.00233 * 5 4 3 38 38 H 1.08998 * 109.46819 * 210.00008 * 5 4 3 39 39 H 1.08997 * 109.46952 * 330.00050 * 5 4 3 40 40 H 1.08997 * 110.93529 * 320.55531 * 11 10 8 41 41 H 1.08999 * 110.93668 * 84.19533 * 11 10 8 42 42 H 1.08994 * 110.21962 * 68.51856 * 16 10 8 43 43 H 1.09005 * 110.21834 * 306.58274 * 16 10 8 44 44 H 1.09005 * 110.20518 * 203.11041 * 19 17 14 45 45 H 1.08994 * 109.33321 * 82.20063 * 19 17 14 46 46 H 1.09000 * 109.49294 * 205.16910 * 20 19 17 47 47 H 1.08993 * 109.49281 * 85.08204 * 20 19 17 48 48 H 1.09002 * 110.58456 * 83.29693 * 23 21 12 49 49 H 1.08994 * 110.58305 * 206.24669 * 23 21 12 50 50 H 0.97006 * 119.99933 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3264 1.0775 0.0000 4 7 3.5951 0.6153 0.0006 5 6 4.7938 1.4576 0.0002 6 7 3.5999 -0.6694 0.0066 7 6 2.3635 -1.1264 0.0006 8 6 1.9506 -2.5445 0.0007 9 8 0.7698 -2.8339 0.0004 10 7 2.8829 -3.5179 0.0014 11 6 2.6116 -4.9911 0.0021 12 6 3.8774 -5.5366 0.5561 13 1 3.9343 -5.1138 1.5592 14 6 4.9674 -4.7034 -0.1916 15 1 5.0599 -4.9715 -1.2440 16 6 4.3566 -3.3116 0.0025 17 6 6.2368 -5.0296 0.6031 18 1 6.9772 -4.2297 0.5941 19 6 6.7109 -6.3705 -0.0256 20 6 5.4558 -7.1960 -0.3555 21 6 4.3688 -6.9354 0.7262 22 1 3.5767 -7.6840 0.7465 23 6 5.2066 -6.8252 2.0536 24 7 5.8359 -5.4723 1.9639 25 6 5.9973 -4.6814 3.0700 26 1 6.0874 -3.6108 2.9599 27 6 6.0451 -5.2557 4.3329 28 7 6.1427 -6.5623 4.4584 29 14 5.9710 -4.1742 5.8542 30 1 4.6983 -3.4091 5.8561 31 1 6.0397 -5.0244 7.0697 32 1 7.1167 -3.2294 5.8462 33 1 -0.3633 0.0000 1.0276 34 1 -0.3633 0.8899 -0.5138 35 1 -0.3632 -0.8900 -0.5139 36 1 2.0220 2.1138 0.0004 37 1 5.0908 1.6671 1.0278 38 1 5.6028 0.9379 -0.5131 39 1 4.5794 2.3943 -0.5143 40 1 1.7679 -5.2314 0.6489 41 1 2.4399 -5.3561 -1.0105 42 1 4.6770 -2.8886 0.9545 43 1 4.6458 -2.6556 -0.8186 44 1 7.3392 -6.9153 0.6791 45 1 7.2698 -6.1634 -0.9381 46 1 5.7103 -8.2558 -0.3675 47 1 5.0738 -6.9021 -1.3331 48 1 4.5568 -6.9074 2.9249 49 1 5.9844 -7.5884 2.0803 50 1 6.1765 -6.9636 5.3409 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087357963.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:50:22 Heat of formation + Delta-G solvation = 106.352536 kcal Electronic energy + Delta-G solvation = -32182.421766 eV Core-core repulsion = 28213.216918 eV Total energy + Delta-G solvation = -3969.204847 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.62821 -42.36510 -40.04339 -37.30213 -35.04467 -34.82332 -33.13040 -32.58085 -31.62721 -31.42971 -29.27005 -28.68664 -27.49044 -27.04710 -25.28898 -23.57188 -23.11152 -22.31012 -21.66153 -21.56630 -20.29286 -19.12450 -18.41249 -18.17984 -17.56349 -17.27707 -17.07003 -16.75844 -16.13353 -16.05647 -15.94926 -15.60657 -14.59271 -14.54258 -14.38899 -14.28356 -14.09685 -14.02333 -13.83090 -13.64267 -13.33252 -13.25529 -13.16822 -13.07297 -12.99831 -12.85126 -12.60085 -12.42991 -12.37088 -12.29920 -12.16543 -11.86920 -11.69056 -11.52797 -11.23229 -11.04620 -10.65435 -10.61434 -10.35319 -10.22281 -9.81979 -9.55553 -8.63409 -7.85090 -5.21923 0.54263 1.16394 1.38376 1.41676 1.46610 1.58088 1.96515 2.34241 2.47549 3.24640 3.32477 3.43649 3.44558 3.82238 3.88644 3.93702 4.01218 4.19812 4.33894 4.35663 4.39708 4.41187 4.41621 4.47516 4.48999 4.57066 4.60399 4.64348 4.69872 4.73399 4.88189 4.89155 4.92564 4.97580 4.99346 5.08957 5.16535 5.19792 5.23358 5.28188 5.41912 5.46102 5.50622 5.55822 5.58717 5.71824 5.78827 5.93024 5.95035 6.31902 6.44503 6.83568 7.13144 7.13474 7.82515 8.41387 9.23186 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.010314 B = 0.004261 C = 0.003653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2714.146760 B = 6569.391337 C = 7662.471438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.175 4.175 3 C -0.005 4.005 4 N -0.281 5.281 5 C 0.077 3.923 6 N -0.272 5.272 7 C -0.050 4.050 8 C 0.605 3.395 9 O -0.573 6.573 10 N -0.613 5.613 11 C 0.144 3.856 12 C -0.122 4.122 13 H 0.055 0.945 14 C -0.114 4.114 15 H 0.111 0.889 16 C 0.142 3.858 17 C 0.171 3.829 18 H 0.080 0.920 19 C -0.121 4.121 20 C -0.098 4.098 21 C -0.083 4.083 22 H 0.097 0.903 23 C 0.197 3.803 24 N -0.606 5.606 25 C -0.241 4.241 26 H 0.059 0.941 27 C -0.050 4.050 28 N -0.937 5.937 29 Si 0.953 3.047 30 H -0.293 1.293 31 H -0.293 1.293 32 H -0.275 1.275 33 H 0.061 0.939 34 H 0.093 0.907 35 H 0.054 0.946 36 H 0.228 0.772 37 H 0.093 0.907 38 H 0.097 0.903 39 H 0.135 0.865 40 H 0.060 0.940 41 H 0.086 0.914 42 H 0.043 0.957 43 H 0.079 0.921 44 H 0.041 0.959 45 H 0.082 0.918 46 H 0.065 0.935 47 H 0.080 0.920 48 H 0.027 0.973 49 H 0.014 0.986 50 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.223 14.174 -15.013 20.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.186 4.186 3 C -0.148 4.148 4 N -0.069 5.069 5 C -0.062 4.062 6 N -0.110 5.110 7 C -0.208 4.208 8 C 0.394 3.606 9 O -0.452 6.452 10 N -0.346 5.346 11 C 0.023 3.977 12 C -0.142 4.142 13 H 0.073 0.927 14 C -0.135 4.135 15 H 0.129 0.871 16 C 0.020 3.980 17 C 0.064 3.936 18 H 0.098 0.902 19 C -0.160 4.160 20 C -0.136 4.136 21 C -0.103 4.103 22 H 0.115 0.885 23 C 0.072 3.928 24 N -0.329 5.329 25 C -0.372 4.372 26 H 0.076 0.924 27 C -0.245 4.245 28 N -0.584 5.584 29 Si 0.783 3.217 30 H -0.220 1.220 31 H -0.219 1.219 32 H -0.201 1.201 33 H 0.080 0.920 34 H 0.112 0.888 35 H 0.073 0.927 36 H 0.245 0.755 37 H 0.111 0.889 38 H 0.116 0.884 39 H 0.153 0.847 40 H 0.078 0.922 41 H 0.104 0.896 42 H 0.061 0.939 43 H 0.098 0.902 44 H 0.060 0.940 45 H 0.100 0.900 46 H 0.084 0.916 47 H 0.099 0.901 48 H 0.046 0.954 49 H 0.032 0.968 50 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -2.569 13.767 -14.790 20.368 hybrid contribution -0.690 0.527 1.825 2.022 sum -3.259 14.294 -12.964 19.571 Atomic orbital electron populations 1.20103 0.87551 1.03103 1.02093 1.20724 0.98327 0.90623 1.08889 1.23220 0.82752 1.01619 1.07188 1.45885 1.08828 1.03244 1.48947 1.22613 0.83390 0.94392 1.05762 1.73644 1.22676 0.95334 1.19356 1.21735 0.90926 0.94385 1.13756 1.16948 0.84266 0.83315 0.76117 1.90690 1.17470 1.83323 1.53759 1.49570 1.07590 1.06394 1.71006 1.20881 0.97078 0.78421 1.01318 1.20980 0.93336 0.97446 1.02425 0.92658 1.23411 0.96848 0.92949 1.00246 0.87107 1.21809 0.77595 0.97766 1.00807 1.21597 0.93097 0.95479 0.83381 0.90249 1.22581 0.97612 0.95900 0.99874 1.22123 0.93971 0.99562 0.97922 1.22016 0.97091 0.94000 0.97177 0.88462 1.21997 0.92589 0.85178 0.92988 1.45621 1.69208 1.15967 1.02147 1.19306 1.42134 0.89642 0.86104 0.92368 1.25502 1.02359 0.96664 0.99985 1.70097 1.56738 1.09723 1.21879 0.85552 0.77646 0.78252 0.80271 1.22034 1.21937 1.20071 0.92025 0.88813 0.92651 0.75516 0.88884 0.88385 0.84665 0.92195 0.89634 0.93896 0.90233 0.94021 0.89991 0.91648 0.90148 0.95402 0.96755 0.94487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.69 9.93 71.24 0.71 -0.99 16 2 C -0.18 -4.78 6.25 -19.72 -0.12 -4.90 16 3 C 0.00 -0.09 11.40 83.54 0.95 0.86 16 4 N -0.28 -5.98 3.70 -369.45 -1.37 -7.35 16 5 C 0.08 0.78 11.31 127.77 1.44 2.23 16 6 N -0.27 -8.32 9.53 -48.18 -0.46 -8.78 16 7 C -0.05 -1.72 6.98 42.45 0.30 -1.43 16 8 C 0.61 23.81 7.88 86.74 0.68 24.49 16 9 O -0.57 -24.66 15.46 -3.95 -0.06 -24.72 16 10 N -0.61 -22.85 3.41 -818.31 -2.79 -25.64 16 11 C 0.14 5.00 6.81 84.33 0.57 5.58 16 12 C -0.12 -4.44 2.41 -12.27 -0.03 -4.47 16 13 H 0.06 2.61 5.14 -2.38 -0.01 2.60 16 14 C -0.11 -3.70 2.67 -9.50 -0.03 -3.73 16 15 H 0.11 2.99 6.73 -2.39 -0.02 2.97 16 16 C 0.14 4.95 5.08 86.01 0.44 5.38 16 17 C 0.17 6.43 4.26 45.54 0.19 6.62 16 18 H 0.08 2.98 8.14 -2.39 -0.02 2.96 16 19 C -0.12 -3.93 5.43 31.72 0.17 -3.76 16 20 C -0.10 -2.85 5.29 31.74 0.17 -2.68 16 21 C -0.08 -2.91 4.52 -9.58 -0.04 -2.96 16 22 H 0.10 3.08 8.14 -2.39 -0.02 3.06 16 23 C 0.20 9.27 4.00 87.34 0.35 9.62 16 24 N -0.61 -29.10 1.73 -651.51 -1.13 -30.23 16 25 C -0.24 -13.27 9.65 84.04 0.81 -12.46 16 26 H 0.06 3.20 7.85 -2.91 -0.02 3.18 16 27 C -0.05 -2.87 5.20 84.86 0.44 -2.43 16 28 N -0.94 -55.77 10.89 21.65 0.24 -55.54 16 29 Si 0.95 46.84 29.57 68.60 2.03 48.87 16 30 H -0.29 -14.58 7.11 99.48 0.71 -13.87 16 31 H -0.29 -14.44 7.11 99.48 0.71 -13.73 16 32 H -0.27 -12.93 7.11 99.48 0.71 -12.22 16 33 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.05 1.61 6.72 -2.39 -0.02 1.60 16 36 H 0.23 1.80 8.06 -2.91 -0.02 1.78 16 37 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.14 0.27 8.13 -2.39 -0.02 0.25 16 40 H 0.06 2.24 8.13 -2.39 -0.02 2.22 16 41 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 42 H 0.04 1.78 8.01 -2.39 -0.02 1.76 16 43 H 0.08 2.52 7.34 -2.38 -0.02 2.51 16 44 H 0.04 1.61 7.22 -2.38 -0.02 1.59 16 45 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 46 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 47 H 0.08 1.91 7.00 -2.39 -0.02 1.90 16 48 H 0.03 1.52 6.86 -2.39 -0.02 1.51 16 49 H 0.01 0.73 7.09 -2.39 -0.02 0.71 16 50 H 0.25 14.42 8.31 -92.70 -0.77 13.65 16 Total: -1.00 -77.24 380.54 4.41 -72.83 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: 0.94 Total: 15.56 kcal Atomic # 6 Polarization: 7.98 SS G_CDS: 7.01 Total: 14.99 kcal Atomic # 7 Polarization: -122.03 SS G_CDS: -5.51 Total: -127.54 kcal Atomic # 8 Polarization: -24.66 SS G_CDS: -0.06 Total: -24.72 kcal Atomic # 14 Polarization: 46.84 SS G_CDS: 2.03 Total: 48.87 kcal Total: -77.24 4.41 -72.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087357963.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.183 kcal (2) G-P(sol) polarization free energy of solvation -77.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds