Wall clock time and date at job start Wed Apr 1 2020 03:42:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50698 * 109.46811 * 2 1 4 4 N 1.30447 * 125.99217 * 270.16876 * 3 2 1 5 5 N 1.39932 * 108.89611 * 180.26590 * 4 3 2 6 6 H 0.97009 * 125.75812 * 179.73485 * 5 4 3 7 7 C 1.34256 * 108.49472 * 359.73929 * 5 4 3 8 8 C 1.38037 * 107.41736 * 359.97438 * 7 5 4 9 9 C 1.47429 * 126.41829 * 179.97438 * 8 7 5 10 10 O 1.21602 * 120.00219 * 212.94640 * 9 8 7 11 11 N 1.34778 * 119.99935 * 32.95191 * 9 8 7 12 12 C 1.48161 * 127.83200 * 355.44470 * 11 9 8 13 13 C 1.54386 * 104.57810 * 140.41038 * 12 11 9 14 14 H 1.09002 * 110.81217 * 263.73933 * 13 12 11 15 15 C 1.55262 * 104.68953 * 23.96228 * 13 12 11 16 16 H 1.08996 * 110.85925 * 239.11253 * 15 13 12 17 17 C 1.48146 * 127.83799 * 175.44384 * 11 9 8 18 18 C 1.53288 * 108.76125 * 116.87452 * 15 13 12 19 19 H 1.09001 * 110.49103 * 181.90467 * 18 15 13 20 20 C 1.53322 * 109.20565 * 60.16950 * 18 15 13 21 21 C 1.52934 * 109.59601 * 299.11155 * 20 18 15 22 22 C 1.52971 * 109.06725 * 141.57116 * 13 12 11 23 23 H 1.09007 * 109.64068 * 66.11159 * 22 13 12 24 24 C 1.53614 * 109.30455 * 305.30338 * 22 13 12 25 25 N 1.47640 * 106.72543 * 300.59948 * 24 22 13 26 26 C 1.36942 * 122.05383 * 179.84052 * 25 24 22 27 27 H 1.08005 * 119.99610 * 179.71321 * 26 25 24 28 28 C 1.38810 * 120.00391 * 359.97438 * 26 25 24 29 29 N 1.31620 * 119.99848 * 359.72339 * 28 26 25 30 30 Si 1.86799 * 120.00023 * 179.72717 * 28 26 25 31 31 H 1.48490 * 109.47385 * 59.99742 * 30 28 26 32 32 H 1.48495 * 109.47249 * 180.02562 * 30 28 26 33 33 H 1.48505 * 109.46722 * 299.99708 * 30 28 26 34 34 H 1.09005 * 109.47041 * 60.00224 * 1 2 3 35 35 H 1.08996 * 109.46871 * 179.97438 * 1 2 3 36 36 H 1.08997 * 109.47265 * 299.99996 * 1 2 3 37 37 H 1.09000 * 109.47401 * 240.00508 * 2 1 3 38 38 H 1.09002 * 109.47073 * 120.00310 * 2 1 3 39 39 H 1.08005 * 126.29405 * 180.02562 * 7 5 4 40 40 H 1.09002 * 110.41495 * 21.63417 * 12 11 9 41 41 H 1.08999 * 110.41304 * 259.18495 * 12 11 9 42 42 H 1.08998 * 110.40672 * 338.29831 * 17 11 9 43 43 H 1.09004 * 110.40529 * 100.61062 * 17 11 9 44 44 H 1.09002 * 109.44996 * 59.14859 * 20 18 15 45 45 H 1.08992 * 109.45023 * 179.07015 * 20 18 15 46 46 H 1.08996 * 109.38323 * 120.81147 * 21 20 18 47 47 H 1.09003 * 109.38152 * 240.48425 * 21 20 18 48 48 H 1.08996 * 110.12508 * 181.22688 * 24 22 13 49 49 H 1.08998 * 109.86977 * 59.83567 * 24 22 13 50 50 H 0.96992 * 119.99751 * 179.97438 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2848 2.1446 -1.0554 5 7 2.7375 3.4032 -0.6441 6 1 2.9983 4.1311 -1.2299 7 6 2.7503 3.4335 0.6981 8 6 2.3086 2.2038 1.1433 9 6 2.1599 1.7835 2.5486 10 8 2.3518 0.6238 2.8599 11 7 1.8112 2.6846 3.4882 12 6 1.6274 4.1455 3.3225 13 6 0.3941 4.4826 4.1878 14 1 -0.5104 4.5077 3.5800 15 6 0.3341 3.3484 5.2465 16 1 -0.6119 2.8105 5.1858 17 6 1.5247 2.4392 4.9208 18 6 0.5271 3.9621 6.6379 19 1 0.5234 3.1845 7.4017 20 6 -0.5908 4.9780 6.9006 21 6 -0.5260 6.0934 5.8563 22 6 0.6208 5.8287 4.8781 23 1 0.6558 6.6221 4.1314 24 6 1.9413 5.7816 5.6616 25 7 1.8136 4.6871 6.6441 26 6 2.8238 4.3676 7.5116 27 1 2.6929 3.5631 8.2202 28 6 4.0141 5.0812 7.4840 29 7 4.1738 6.0614 6.6202 30 14 5.3893 4.6503 8.6725 31 1 5.8096 3.2430 8.4540 32 1 6.5447 5.5541 8.4414 33 1 4.9065 4.8119 10.0676 34 1 -0.3633 0.5138 -0.8900 35 1 -0.3633 -1.0276 -0.0005 36 1 -0.3633 0.5138 0.8899 37 1 1.8934 -0.5137 -0.8900 38 1 1.8934 -0.5139 0.8900 39 1 3.0502 4.2670 1.3159 40 1 1.4364 4.3885 2.2772 41 1 2.5041 4.6824 3.6845 42 1 1.2551 1.3953 5.0811 43 1 2.3869 2.7065 5.5320 44 1 -1.5575 4.4782 6.8383 45 1 -0.4668 5.4048 7.8957 46 1 -1.4675 6.1310 5.3083 47 1 -0.3620 7.0480 6.3563 48 1 2.1055 6.7279 6.1769 49 1 2.7684 5.5777 4.9816 50 1 5.0054 6.5603 6.6012 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087370486.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:42:55 Heat of formation + Delta-G solvation = 73.892665 kcal Electronic energy + Delta-G solvation = -32300.840435 eV Core-core repulsion = 28330.228022 eV Total energy + Delta-G solvation = -3970.612413 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.48063 -40.42007 -38.28473 -35.54966 -34.22905 -33.36799 -31.81735 -30.99090 -30.35315 -29.88522 -29.42536 -26.98065 -25.36933 -24.56854 -24.07014 -22.21559 -21.91440 -21.00976 -20.77556 -19.89423 -19.22954 -17.65501 -17.36658 -16.45534 -15.88243 -15.75415 -15.18210 -15.08473 -14.99166 -14.55938 -14.29054 -14.27512 -14.11980 -13.82889 -13.17692 -13.06393 -12.74253 -12.41611 -12.26798 -12.21572 -11.90937 -11.86626 -11.54943 -11.49755 -11.26229 -11.20885 -11.08362 -10.91655 -10.80866 -10.67622 -10.55213 -10.45739 -10.19807 -9.83697 -9.77655 -9.59505 -9.50738 -9.26872 -9.21711 -8.77616 -8.51905 -8.12115 -6.87891 -5.70097 -3.06297 1.56316 2.21119 2.62513 3.38116 3.40140 3.44878 3.46046 3.57496 4.43726 4.47516 4.65377 4.89468 5.00664 5.05347 5.12465 5.27498 5.33669 5.36743 5.44014 5.46405 5.50307 5.62860 5.63444 5.68268 5.73443 5.83324 5.90067 5.91389 5.93944 6.01817 6.08420 6.11603 6.15975 6.29888 6.34047 6.39149 6.41303 6.44975 6.59027 6.61307 6.69801 6.75839 6.84562 6.99680 7.02483 7.03844 7.49081 7.61202 7.63084 7.86155 8.04522 8.28282 8.60231 9.22974 9.83579 10.37145 11.34959 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.012639 B = 0.003821 C = 0.003511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2214.903096 B = 7326.844618 C = 7973.996072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.053 4.053 3 C 0.133 3.867 4 N -0.302 5.302 5 N -0.466 5.466 6 H 0.442 0.558 7 C 0.100 3.900 8 C -0.272 4.272 9 C 0.609 3.391 10 O -0.551 6.551 11 N -0.610 5.610 12 C 0.092 3.908 13 C -0.080 4.080 14 H 0.066 0.934 15 C -0.109 4.109 16 H 0.068 0.932 17 C 0.116 3.884 18 C 0.177 3.823 19 H 0.068 0.932 20 C -0.127 4.127 21 C -0.100 4.100 22 C -0.113 4.113 23 H 0.064 0.936 24 C 0.199 3.801 25 N -0.597 5.597 26 C -0.234 4.234 27 H 0.074 0.926 28 C -0.004 4.004 29 N -0.924 5.924 30 Si 0.906 3.094 31 H -0.286 1.286 32 H -0.292 1.292 33 H -0.287 1.287 34 H 0.053 0.947 35 H 0.063 0.937 36 H 0.056 0.944 37 H 0.077 0.923 38 H 0.102 0.898 39 H 0.189 0.811 40 H 0.064 0.936 41 H 0.096 0.904 42 H 0.065 0.935 43 H 0.104 0.896 44 H 0.047 0.953 45 H 0.059 0.941 46 H 0.044 0.956 47 H 0.055 0.945 48 H 0.050 0.950 49 H 0.056 0.944 50 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.373 -1.999 -11.767 14.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.092 4.092 3 C -0.035 4.035 4 N -0.124 5.124 5 N -0.171 5.171 6 H 0.287 0.713 7 C -0.051 4.051 8 C -0.287 4.287 9 C 0.398 3.602 10 O -0.430 6.430 11 N -0.342 5.342 12 C -0.031 4.031 13 C -0.100 4.100 14 H 0.084 0.916 15 C -0.130 4.130 16 H 0.087 0.913 17 C -0.005 4.005 18 C 0.069 3.931 19 H 0.086 0.914 20 C -0.167 4.167 21 C -0.137 4.137 22 C -0.132 4.132 23 H 0.082 0.918 24 C 0.076 3.924 25 N -0.321 5.321 26 C -0.362 4.362 27 H 0.092 0.908 28 C -0.200 4.200 29 N -0.572 5.572 30 Si 0.737 3.263 31 H -0.212 1.212 32 H -0.218 1.218 33 H -0.213 1.213 34 H 0.072 0.928 35 H 0.082 0.918 36 H 0.075 0.925 37 H 0.096 0.904 38 H 0.120 0.880 39 H 0.206 0.794 40 H 0.083 0.917 41 H 0.114 0.886 42 H 0.083 0.917 43 H 0.122 0.878 44 H 0.066 0.934 45 H 0.078 0.922 46 H 0.062 0.938 47 H 0.074 0.926 48 H 0.068 0.932 49 H 0.074 0.926 50 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -8.015 -2.555 -12.931 15.427 hybrid contribution 0.942 0.633 1.191 1.645 sum -7.073 -1.922 -11.740 13.840 Atomic orbital electron populations 1.21656 0.94186 1.02029 1.01995 1.20144 0.96219 0.88376 1.04466 1.22374 0.95724 0.96708 0.88692 1.77077 1.21982 0.90860 1.22489 1.46057 1.52098 1.13442 1.05470 0.71322 1.23383 0.97603 0.98788 0.85354 1.20259 1.18652 0.95210 0.94610 1.16756 0.76477 0.84205 0.82761 1.90720 1.52379 1.18201 1.81679 1.48801 1.67234 1.08066 1.10062 1.22949 1.00123 0.80892 0.99095 1.22094 0.96451 0.95779 0.95646 0.91585 1.22650 0.97150 0.95466 0.97768 0.91326 1.22279 0.99389 0.98730 0.80126 1.20558 0.86675 0.92820 0.93084 0.91372 1.22004 0.98134 0.97506 0.99040 1.21326 0.96947 0.98655 0.96812 1.21818 0.99042 0.94958 0.97430 0.91809 1.21244 0.89671 0.91577 0.89953 1.44589 1.10997 1.36283 1.40204 1.19218 0.92423 1.13462 1.11142 0.90770 1.24719 0.97951 0.98174 0.99179 1.69985 1.25625 1.23674 1.37892 0.86293 0.81857 0.77531 0.80665 1.21215 1.21785 1.21336 0.92796 0.91843 0.92473 0.90419 0.87971 0.79428 0.91730 0.88629 0.91663 0.87843 0.93428 0.92179 0.93752 0.92598 0.93230 0.92641 0.93906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 9.89 37.16 0.37 -1.19 16 2 C -0.05 -0.67 6.29 -27.88 -0.18 -0.84 16 3 C 0.13 1.91 6.51 -82.02 -0.53 1.37 16 4 N -0.30 -4.05 12.63 33.90 0.43 -3.63 16 5 N -0.47 -4.93 7.29 30.85 0.22 -4.71 16 6 H 0.44 2.97 8.96 -182.72 -1.64 1.33 16 7 C 0.10 1.19 10.04 -16.57 -0.17 1.03 16 8 C -0.27 -4.11 5.77 -105.07 -0.61 -4.71 16 9 C 0.61 10.85 7.74 -12.52 -0.10 10.76 16 10 O -0.55 -11.33 15.73 5.28 0.08 -11.25 16 11 N -0.61 -10.47 3.32 -171.22 -0.57 -11.04 16 12 C 0.09 1.39 5.19 -2.40 -0.01 1.38 16 13 C -0.08 -1.22 3.15 -88.71 -0.28 -1.50 16 14 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 15 C -0.11 -1.78 3.19 -89.11 -0.28 -2.06 16 16 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 17 C 0.12 2.13 6.36 -2.97 -0.02 2.11 16 18 C 0.18 3.22 3.01 -66.97 -0.20 3.02 16 19 H 0.07 1.25 7.99 -51.93 -0.42 0.84 16 20 C -0.13 -2.06 5.86 -26.60 -0.16 -2.22 16 21 C -0.10 -1.54 5.65 -26.74 -0.15 -1.70 16 22 C -0.11 -1.84 2.87 -90.30 -0.26 -2.10 16 23 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 24 C 0.20 4.20 4.01 -3.10 -0.01 4.18 16 25 N -0.60 -13.08 1.96 -163.14 -0.32 -13.40 16 26 C -0.23 -5.87 9.23 -15.06 -0.14 -6.01 16 27 H 0.07 1.84 7.79 -52.48 -0.41 1.43 16 28 C 0.00 -0.12 5.47 -17.43 -0.10 -0.21 16 29 N -0.92 -24.77 9.77 55.49 0.54 -24.23 16 30 Si 0.91 21.30 29.55 -169.99 -5.02 16.27 16 31 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 32 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 33 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 34 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.10 1.45 6.58 -51.93 -0.34 1.11 16 39 H 0.19 1.85 6.54 -52.48 -0.34 1.50 16 40 H 0.06 0.81 5.55 -51.93 -0.29 0.53 16 41 H 0.10 1.65 5.31 -51.93 -0.28 1.38 16 42 H 0.06 1.19 7.92 -51.93 -0.41 0.78 16 43 H 0.10 2.24 6.30 -51.93 -0.33 1.92 16 44 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 45 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 46 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 48 H 0.05 1.21 7.24 -51.93 -0.38 0.84 16 49 H 0.06 1.28 4.88 -51.93 -0.25 1.03 16 50 H 0.25 6.69 8.31 -40.82 -0.34 6.36 16 LS Contribution 374.76 15.07 5.65 5.65 Total: -1.00 -30.42 374.76 -10.67 -41.09 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: -8.86 Total: 3.92 kcal Atomic # 6 Polarization: 4.13 SS G_CDS: -2.82 Total: 1.31 kcal Atomic # 7 Polarization: -57.30 SS G_CDS: 0.31 Total: -57.00 kcal Atomic # 8 Polarization: -11.33 SS G_CDS: 0.08 Total: -11.25 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -30.42 -10.67 -41.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087370486.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.983 kcal (2) G-P(sol) polarization free energy of solvation -30.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds