Wall clock time and date at job start Wed Apr 1 2020 03:42:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50698 * 109.46811 * 2 1 4 4 N 1.30447 * 125.99217 * 270.16876 * 3 2 1 5 5 N 1.39932 * 108.89611 * 180.26590 * 4 3 2 6 6 H 0.97009 * 125.75812 * 179.73485 * 5 4 3 7 7 C 1.34256 * 108.49472 * 359.73929 * 5 4 3 8 8 C 1.38037 * 107.41736 * 359.97438 * 7 5 4 9 9 C 1.47429 * 126.41829 * 179.97438 * 8 7 5 10 10 O 1.21602 * 120.00219 * 212.94640 * 9 8 7 11 11 N 1.34778 * 119.99935 * 32.95191 * 9 8 7 12 12 C 1.48161 * 127.83200 * 355.44470 * 11 9 8 13 13 C 1.54386 * 104.57810 * 140.41038 * 12 11 9 14 14 H 1.09002 * 110.81217 * 263.73933 * 13 12 11 15 15 C 1.55262 * 104.68953 * 23.96228 * 13 12 11 16 16 H 1.08996 * 110.85925 * 239.11253 * 15 13 12 17 17 C 1.48146 * 127.83799 * 175.44384 * 11 9 8 18 18 C 1.53288 * 108.76125 * 116.87452 * 15 13 12 19 19 H 1.09001 * 110.49103 * 181.90467 * 18 15 13 20 20 C 1.53322 * 109.20565 * 60.16950 * 18 15 13 21 21 C 1.52934 * 109.59601 * 299.11155 * 20 18 15 22 22 C 1.52971 * 109.06725 * 141.57116 * 13 12 11 23 23 H 1.09007 * 109.64068 * 66.11159 * 22 13 12 24 24 C 1.53614 * 109.30455 * 305.30338 * 22 13 12 25 25 N 1.47640 * 106.72543 * 300.59948 * 24 22 13 26 26 C 1.36942 * 122.05383 * 179.84052 * 25 24 22 27 27 H 1.08005 * 119.99610 * 179.71321 * 26 25 24 28 28 C 1.38810 * 120.00391 * 359.97438 * 26 25 24 29 29 N 1.31620 * 119.99848 * 359.72339 * 28 26 25 30 30 Si 1.86799 * 120.00023 * 179.72717 * 28 26 25 31 31 H 1.48490 * 109.47385 * 59.99742 * 30 28 26 32 32 H 1.48495 * 109.47249 * 180.02562 * 30 28 26 33 33 H 1.48505 * 109.46722 * 299.99708 * 30 28 26 34 34 H 1.09005 * 109.47041 * 60.00224 * 1 2 3 35 35 H 1.08996 * 109.46871 * 179.97438 * 1 2 3 36 36 H 1.08997 * 109.47265 * 299.99996 * 1 2 3 37 37 H 1.09000 * 109.47401 * 240.00508 * 2 1 3 38 38 H 1.09002 * 109.47073 * 120.00310 * 2 1 3 39 39 H 1.08005 * 126.29405 * 180.02562 * 7 5 4 40 40 H 1.09002 * 110.41495 * 21.63417 * 12 11 9 41 41 H 1.08999 * 110.41304 * 259.18495 * 12 11 9 42 42 H 1.08998 * 110.40672 * 338.29831 * 17 11 9 43 43 H 1.09004 * 110.40529 * 100.61062 * 17 11 9 44 44 H 1.09002 * 109.44996 * 59.14859 * 20 18 15 45 45 H 1.08992 * 109.45023 * 179.07015 * 20 18 15 46 46 H 1.08996 * 109.38323 * 120.81147 * 21 20 18 47 47 H 1.09003 * 109.38152 * 240.48425 * 21 20 18 48 48 H 1.08996 * 110.12508 * 181.22688 * 24 22 13 49 49 H 1.08998 * 109.86977 * 59.83567 * 24 22 13 50 50 H 0.96992 * 119.99751 * 179.97438 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2848 2.1446 -1.0554 5 7 2.7375 3.4032 -0.6441 6 1 2.9983 4.1311 -1.2299 7 6 2.7503 3.4335 0.6981 8 6 2.3086 2.2038 1.1433 9 6 2.1599 1.7835 2.5486 10 8 2.3518 0.6238 2.8599 11 7 1.8112 2.6846 3.4882 12 6 1.6274 4.1455 3.3225 13 6 0.3941 4.4826 4.1878 14 1 -0.5104 4.5077 3.5800 15 6 0.3341 3.3484 5.2465 16 1 -0.6119 2.8105 5.1858 17 6 1.5247 2.4392 4.9208 18 6 0.5271 3.9621 6.6379 19 1 0.5234 3.1845 7.4017 20 6 -0.5908 4.9780 6.9006 21 6 -0.5260 6.0934 5.8563 22 6 0.6208 5.8287 4.8781 23 1 0.6558 6.6221 4.1314 24 6 1.9413 5.7816 5.6616 25 7 1.8136 4.6871 6.6441 26 6 2.8238 4.3676 7.5116 27 1 2.6929 3.5631 8.2202 28 6 4.0141 5.0812 7.4840 29 7 4.1738 6.0614 6.6202 30 14 5.3893 4.6503 8.6725 31 1 5.8096 3.2430 8.4540 32 1 6.5447 5.5541 8.4414 33 1 4.9065 4.8119 10.0676 34 1 -0.3633 0.5138 -0.8900 35 1 -0.3633 -1.0276 -0.0005 36 1 -0.3633 0.5138 0.8899 37 1 1.8934 -0.5137 -0.8900 38 1 1.8934 -0.5139 0.8900 39 1 3.0502 4.2670 1.3159 40 1 1.4364 4.3885 2.2772 41 1 2.5041 4.6824 3.6845 42 1 1.2551 1.3953 5.0811 43 1 2.3869 2.7065 5.5320 44 1 -1.5575 4.4782 6.8383 45 1 -0.4668 5.4048 7.8957 46 1 -1.4675 6.1310 5.3083 47 1 -0.3620 7.0480 6.3563 48 1 2.1055 6.7279 6.1769 49 1 2.7684 5.5777 4.9816 50 1 5.0054 6.5603 6.6012 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087370486.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:42:54 Heat of formation + Delta-G solvation = 56.006913 kcal Electronic energy + Delta-G solvation = -32301.616019 eV Core-core repulsion = 28330.228022 eV Total energy + Delta-G solvation = -3971.387997 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.54710 -41.76896 -39.67446 -36.97659 -35.24375 -35.08614 -33.25354 -32.25976 -31.56786 -31.30714 -30.67617 -28.37495 -27.10963 -25.88509 -25.00928 -23.67870 -23.30715 -22.40067 -22.02696 -21.09575 -20.30002 -19.18534 -18.71169 -17.78717 -17.28309 -17.14086 -16.83514 -16.28381 -16.17943 -15.88617 -15.79185 -15.52859 -15.42975 -14.91415 -14.48345 -14.39301 -14.12824 -13.85582 -13.65391 -13.35285 -13.31567 -13.24145 -13.10484 -12.81875 -12.59758 -12.51709 -12.43895 -12.34803 -12.18750 -12.17087 -11.99382 -11.82976 -11.75320 -11.63814 -11.18040 -10.90645 -10.68310 -10.61542 -10.54125 -10.42968 -9.89153 -9.50306 -8.71099 -7.68104 -5.02682 0.54332 1.09038 1.47606 1.49106 1.53385 1.72534 2.11515 2.28806 2.55472 3.38668 3.43996 3.61266 3.68258 3.71634 3.79630 3.96512 4.11541 4.14424 4.32395 4.34951 4.39710 4.43827 4.46628 4.47592 4.51781 4.61083 4.64809 4.65488 4.69804 4.71775 4.90863 5.01832 5.03030 5.03985 5.09157 5.15448 5.21356 5.26547 5.30539 5.35536 5.38392 5.43440 5.47882 5.59756 5.64018 5.74210 5.93338 6.05744 6.22532 6.38903 6.50189 6.72292 7.24163 7.28751 7.99736 8.47917 9.33285 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.012639 B = 0.003821 C = 0.003511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2214.903096 B = 7326.844618 C = 7973.996072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.054 4.054 3 C 0.125 3.875 4 N -0.312 5.312 5 N -0.444 5.444 6 H 0.461 0.539 7 C 0.122 3.878 8 C -0.305 4.305 9 C 0.606 3.394 10 O -0.589 6.589 11 N -0.611 5.611 12 C 0.096 3.904 13 C -0.073 4.073 14 H 0.101 0.899 15 C -0.099 4.099 16 H 0.095 0.905 17 C 0.119 3.881 18 C 0.169 3.831 19 H 0.058 0.942 20 C -0.122 4.122 21 C -0.097 4.097 22 C -0.103 4.103 23 H 0.087 0.913 24 C 0.209 3.791 25 N -0.608 5.608 26 C -0.231 4.231 27 H 0.070 0.930 28 C -0.055 4.055 29 N -0.941 5.941 30 Si 0.953 3.047 31 H -0.289 1.289 32 H -0.298 1.298 33 H -0.283 1.283 34 H 0.061 0.939 35 H 0.080 0.920 36 H 0.041 0.959 37 H 0.092 0.908 38 H 0.080 0.920 39 H 0.211 0.789 40 H 0.098 0.902 41 H 0.071 0.929 42 H 0.058 0.942 43 H 0.061 0.939 44 H 0.080 0.920 45 H 0.040 0.960 46 H 0.080 0.920 47 H 0.044 0.956 48 H 0.007 0.993 49 H 0.031 0.969 50 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.755 -1.438 -13.938 17.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.093 4.093 3 C -0.043 4.043 4 N -0.135 5.135 5 N -0.151 5.151 6 H 0.310 0.690 7 C -0.031 4.031 8 C -0.320 4.320 9 C 0.397 3.603 10 O -0.471 6.471 11 N -0.342 5.342 12 C -0.026 4.026 13 C -0.092 4.092 14 H 0.119 0.881 15 C -0.120 4.120 16 H 0.114 0.886 17 C -0.003 4.003 18 C 0.062 3.938 19 H 0.077 0.923 20 C -0.161 4.161 21 C -0.135 4.135 22 C -0.123 4.123 23 H 0.105 0.895 24 C 0.085 3.915 25 N -0.332 5.332 26 C -0.361 4.361 27 H 0.088 0.912 28 C -0.249 4.249 29 N -0.592 5.592 30 Si 0.784 3.216 31 H -0.216 1.216 32 H -0.224 1.224 33 H -0.210 1.210 34 H 0.080 0.920 35 H 0.098 0.902 36 H 0.060 0.940 37 H 0.110 0.890 38 H 0.098 0.902 39 H 0.227 0.773 40 H 0.116 0.884 41 H 0.089 0.911 42 H 0.076 0.924 43 H 0.080 0.920 44 H 0.099 0.901 45 H 0.059 0.941 46 H 0.099 0.901 47 H 0.063 0.937 48 H 0.025 0.975 49 H 0.049 0.951 50 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -10.431 -1.977 -15.128 18.482 hybrid contribution 1.722 0.418 1.879 2.583 sum -8.709 -1.559 -13.249 15.932 Atomic orbital electron populations 1.21600 0.92916 1.03050 1.01511 1.20161 0.97310 0.87828 1.04041 1.22578 0.95811 0.97332 0.88600 1.77049 1.22378 0.91771 1.22265 1.46082 1.50427 1.13202 1.05376 0.69014 1.23581 0.95556 0.98123 0.85873 1.20140 1.21667 0.97017 0.93189 1.17196 0.75539 0.83718 0.83862 1.90690 1.54041 1.19887 1.82510 1.48856 1.66991 1.08977 1.09344 1.22942 0.99325 0.79265 1.01064 1.22126 0.97652 0.94123 0.95268 0.88081 1.22553 0.97150 0.95613 0.96690 0.88636 1.22042 0.98726 0.98819 0.80737 1.20792 0.85741 0.93063 0.94221 0.92338 1.21925 0.98548 0.97219 0.98421 1.21327 0.98061 0.97613 0.96488 1.21693 0.96366 0.96604 0.97597 0.89479 1.20901 0.92092 0.89156 0.89315 1.44762 1.11768 1.36841 1.39814 1.19470 0.93299 1.12470 1.10901 0.91213 1.25261 0.99740 0.98961 1.00899 1.70184 1.25291 1.24555 1.39137 0.85526 0.79860 0.76710 0.79464 1.21586 1.22437 1.20995 0.92004 0.90158 0.94013 0.88957 0.90180 0.77264 0.88369 0.91085 0.92359 0.92045 0.90129 0.94069 0.90094 0.93726 0.97505 0.95128 0.94939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.74 9.89 71.98 0.71 -2.02 16 2 C -0.05 -1.33 6.29 29.85 0.19 -1.14 16 3 C 0.12 3.39 6.51 43.52 0.28 3.67 16 4 N -0.31 -7.63 12.63 -46.67 -0.59 -8.22 16 5 N -0.44 -8.01 7.29 -56.32 -0.41 -8.42 16 6 H 0.46 4.50 8.96 -213.42 -1.91 2.58 16 7 C 0.12 2.58 10.04 84.27 0.85 3.43 16 8 C -0.31 -8.78 5.77 -20.15 -0.12 -8.89 16 9 C 0.61 21.51 7.74 86.66 0.67 22.18 16 10 O -0.59 -24.93 15.73 -4.04 -0.06 -24.99 16 11 N -0.61 -20.60 3.32 -813.86 -2.70 -23.29 16 12 C 0.10 2.71 5.19 86.53 0.45 3.16 16 13 C -0.07 -1.95 3.15 -9.56 -0.03 -1.98 16 14 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 15 C -0.10 -3.03 3.19 -9.82 -0.03 -3.06 16 16 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 17 C 0.12 4.39 6.36 86.17 0.55 4.94 16 18 C 0.17 6.00 3.01 44.97 0.14 6.13 16 19 H 0.06 2.15 7.99 -2.39 -0.02 2.13 16 20 C -0.12 -3.65 5.86 30.68 0.18 -3.47 16 21 C -0.10 -2.69 5.65 30.59 0.17 -2.52 16 22 C -0.10 -3.11 2.87 -10.58 -0.03 -3.14 16 23 H 0.09 2.27 8.14 -2.38 -0.02 2.25 16 24 C 0.21 8.94 4.01 86.37 0.35 9.29 16 25 N -0.61 -27.19 1.96 -670.05 -1.31 -28.50 16 26 C -0.23 -12.05 9.23 84.03 0.78 -11.27 16 27 H 0.07 3.59 7.79 -2.91 -0.02 3.57 16 28 C -0.06 -3.00 5.47 84.86 0.46 -2.54 16 29 N -0.94 -52.63 9.77 21.65 0.21 -52.42 16 30 Si 0.95 45.30 29.55 68.60 2.03 47.32 16 31 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 32 H -0.30 -14.34 7.11 99.48 0.71 -13.64 16 33 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 34 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 35 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.08 2.33 6.58 -2.39 -0.02 2.31 16 39 H 0.21 3.45 6.54 -2.91 -0.02 3.44 16 40 H 0.10 2.10 5.55 -2.39 -0.01 2.09 16 41 H 0.07 2.43 5.31 -2.39 -0.01 2.41 16 42 H 0.06 2.18 7.92 -2.39 -0.02 2.16 16 43 H 0.06 2.79 6.30 -2.38 -0.02 2.77 16 44 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 45 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 46 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 47 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 48 H 0.01 0.34 7.24 -2.39 -0.02 0.33 16 49 H 0.03 1.47 4.88 -2.39 -0.01 1.45 16 50 H 0.24 13.43 8.31 -92.71 -0.77 12.66 16 Total: -1.00 -70.23 374.76 1.79 -68.44 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: -0.94 Total: 17.30 kcal Atomic # 6 Polarization: 7.21 SS G_CDS: 5.56 Total: 12.77 kcal Atomic # 7 Polarization: -116.05 SS G_CDS: -4.80 Total: -120.85 kcal Atomic # 8 Polarization: -24.93 SS G_CDS: -0.06 Total: -24.99 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.32 kcal Total: -70.23 1.79 -68.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087370486.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.447 kcal (2) G-P(sol) polarization free energy of solvation -70.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.440 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds