Wall clock time and date at job start Wed Apr 1 2020 03:42:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50701 * 109.46889 * 2 1 4 4 N 1.30443 * 125.98966 * 90.02226 * 3 2 1 5 5 N 1.39932 * 108.89981 * 179.97438 * 4 3 2 6 6 H 0.97006 * 125.75524 * 180.02562 * 5 4 3 7 7 C 1.34256 * 108.49593 * 0.02562 * 5 4 3 8 8 C 1.38054 * 107.41086 * 359.76757 * 7 5 4 9 9 C 1.47425 * 126.41466 * 180.25366 * 8 7 5 10 10 O 1.21597 * 120.00244 * 188.37244 * 9 8 7 11 11 N 1.34784 * 120.00068 * 8.37565 * 9 8 7 12 12 C 1.48166 * 127.83328 * 6.37938 * 11 9 8 13 13 C 1.54717 * 104.37499 * 140.34003 * 12 11 9 14 14 H 1.09006 * 111.08351 * 264.43627 * 13 12 11 15 15 C 1.54156 * 104.98292 * 24.38927 * 13 12 11 16 16 H 1.08999 * 110.87986 * 239.70371 * 15 13 12 17 17 C 1.48139 * 127.83916 * 186.70068 * 11 9 8 18 18 C 1.53027 * 109.71944 * 116.37657 * 15 13 12 19 19 H 1.09007 * 109.64454 * 180.47582 * 18 15 13 20 20 C 1.53791 * 109.25513 * 301.11320 * 18 15 13 21 21 C 1.52918 * 109.90869 * 59.25935 * 20 18 15 22 22 C 1.53212 * 109.39113 * 141.74211 * 13 12 11 23 23 H 1.08997 * 110.52065 * 67.78977 * 22 13 12 24 24 N 1.47653 * 108.07696 * 188.86213 * 22 13 12 25 25 C 1.36932 * 122.03953 * 238.57989 * 24 22 13 26 26 H 1.08004 * 120.00140 * 0.02562 * 25 24 22 27 27 C 1.38812 * 119.99982 * 179.97438 * 25 24 22 28 28 N 1.31616 * 120.00304 * 359.97438 * 27 25 24 29 29 Si 1.86806 * 120.00197 * 180.02562 * 27 25 24 30 30 H 1.48507 * 109.46790 * 359.97438 * 29 27 25 31 31 H 1.48493 * 109.47238 * 119.99867 * 29 27 25 32 32 H 1.48500 * 109.46985 * 240.00348 * 29 27 25 33 33 C 1.47521 * 115.40203 * 59.58518 * 24 22 13 34 34 H 1.08993 * 109.47474 * 60.00250 * 1 2 3 35 35 H 1.09008 * 109.46891 * 179.97438 * 1 2 3 36 36 H 1.08997 * 109.47521 * 299.99416 * 1 2 3 37 37 H 1.09006 * 109.47398 * 240.00856 * 2 1 3 38 38 H 1.08993 * 109.47474 * 119.99750 * 2 1 3 39 39 H 1.07991 * 126.29812 * 180.02562 * 7 5 4 40 40 H 1.08995 * 110.41860 * 259.14471 * 12 11 9 41 41 H 1.08995 * 110.42008 * 21.61277 * 12 11 9 42 42 H 1.08992 * 110.40145 * 338.21813 * 17 11 9 43 43 H 1.09003 * 110.39877 * 100.50990 * 17 11 9 44 44 H 1.08995 * 109.56392 * 299.04117 * 20 18 15 45 45 H 1.08998 * 109.29156 * 179.30481 * 20 18 15 46 46 H 1.09004 * 109.44480 * 240.59474 * 21 20 18 47 47 H 1.09001 * 109.44445 * 120.69405 * 21 20 18 48 48 H 0.96996 * 120.00672 * 179.97438 * 28 27 25 49 49 H 1.09002 * 108.99508 * 239.95873 * 33 24 22 50 50 H 1.08999 * 110.57134 * 118.95136 * 33 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2881 2.1434 1.0554 5 7 2.7343 3.4043 0.6442 6 1 2.9927 4.1330 1.2301 7 6 2.7446 3.4356 -0.6979 8 6 2.3133 2.2021 -1.1432 9 6 2.1706 1.7798 -2.5485 10 8 1.6370 0.7199 -2.8137 11 7 2.6317 2.5687 -3.5394 12 6 3.4176 3.8185 -3.4149 13 6 4.4564 3.7345 -4.5584 14 1 5.4035 3.3318 -4.1990 15 6 3.8219 2.7976 -5.6053 16 1 4.4509 1.9242 -5.7770 17 6 2.4621 2.3862 -4.9997 18 6 3.5738 3.5676 -6.9042 19 1 3.1174 2.9063 -7.6408 20 6 2.6437 4.7585 -6.6182 21 6 3.2826 5.6803 -5.5787 22 6 4.6524 5.1252 -5.1707 23 1 5.1378 5.7916 -4.4578 24 7 5.4770 4.9783 -6.3867 25 6 6.6741 5.6263 -6.5353 26 1 7.0420 6.2682 -5.7485 27 6 7.4154 5.4572 -7.6966 28 7 6.9679 4.6736 -8.6548 29 14 9.0489 6.3405 -7.8991 30 1 9.3249 7.1543 -6.6879 31 1 10.1324 5.3418 -8.0825 32 1 8.9875 7.2283 -9.0879 33 6 4.9109 4.1068 -7.4337 34 1 -0.3634 0.5137 -0.8899 35 1 -0.3633 -1.0278 -0.0005 36 1 -0.3634 0.5137 0.8900 37 1 1.8934 -0.5137 -0.8901 38 1 1.8934 -0.5137 0.8899 39 1 3.0403 4.2706 -1.3157 40 1 2.7733 4.6876 -3.5468 41 1 3.9181 3.8582 -2.4474 42 1 2.2437 1.3434 -5.2294 43 1 1.6669 3.0313 -5.3733 44 1 1.6890 4.3933 -6.2397 45 1 2.4765 5.3145 -7.5407 46 1 2.6387 5.7390 -4.7012 47 1 3.4067 6.6761 -6.0043 48 1 7.4857 4.5557 -9.4665 49 1 5.5986 3.2815 -7.6185 50 1 4.7482 4.6689 -8.3533 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087370487.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:42:59 Heat of formation + Delta-G solvation = 83.187478 kcal Electronic energy + Delta-G solvation = -31709.993394 eV Core-core repulsion = 27739.784035 eV Total energy + Delta-G solvation = -3970.209360 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.68226 -40.63604 -38.47737 -35.82755 -34.30266 -33.27437 -31.87625 -31.03547 -30.47432 -29.97399 -29.67655 -27.34933 -25.61951 -24.40755 -24.13391 -22.29799 -22.03558 -21.13110 -20.94211 -20.13641 -19.44617 -17.87392 -17.23195 -16.60619 -16.35683 -15.79296 -15.45566 -15.15456 -14.87278 -14.83243 -14.69919 -14.14935 -14.08267 -13.78343 -13.55554 -13.16621 -12.75856 -12.47157 -12.41493 -12.23272 -12.17267 -12.06857 -11.62941 -11.52448 -11.35649 -11.26102 -11.12871 -10.95211 -10.90330 -10.72409 -10.58646 -10.45423 -10.18292 -9.95415 -9.73529 -9.69664 -9.65335 -9.33161 -9.26129 -9.00123 -8.53249 -8.43750 -6.88421 -5.69963 -3.06842 1.33933 2.02569 2.46660 3.13886 3.36746 3.42257 3.44924 3.45462 4.27926 4.41269 4.44329 4.74612 4.83519 4.90634 5.06954 5.16672 5.21889 5.29650 5.32210 5.35041 5.39207 5.44203 5.52291 5.52932 5.55668 5.68533 5.74021 5.78119 5.86204 6.00468 6.04338 6.04752 6.11767 6.13426 6.16344 6.18491 6.31583 6.36467 6.45029 6.48910 6.64893 6.73815 6.82798 6.86885 6.89408 6.97457 7.34155 7.60143 7.67090 7.74480 7.87736 8.29070 8.35217 9.22361 9.83232 10.37672 11.35805 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.019108 B = 0.002905 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.004593 B = 9637.838243 C =10280.730178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.047 4.047 3 C 0.137 3.863 4 N -0.301 5.301 5 N -0.464 5.464 6 H 0.443 0.557 7 C 0.094 3.906 8 C -0.279 4.279 9 C 0.611 3.389 10 O -0.546 6.546 11 N -0.617 5.617 12 C 0.084 3.916 13 C -0.105 4.105 14 H 0.079 0.921 15 C -0.078 4.078 16 H 0.077 0.923 17 C 0.105 3.895 18 C -0.109 4.109 19 H 0.067 0.933 20 C -0.106 4.106 21 C -0.135 4.135 22 C 0.180 3.820 23 H 0.066 0.934 24 N -0.598 5.598 25 C -0.235 4.235 26 H 0.075 0.925 27 C -0.007 4.007 28 N -0.921 5.921 29 Si 0.908 3.092 30 H -0.281 1.281 31 H -0.291 1.291 32 H -0.292 1.292 33 C 0.200 3.800 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.050 0.950 37 H 0.098 0.902 38 H 0.074 0.926 39 H 0.197 0.803 40 H 0.083 0.917 41 H 0.075 0.925 42 H 0.076 0.924 43 H 0.078 0.922 44 H 0.050 0.950 45 H 0.056 0.944 46 H 0.051 0.949 47 H 0.060 0.940 48 H 0.250 0.750 49 H 0.051 0.949 50 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.349 -2.014 14.495 18.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.086 4.086 3 C -0.031 4.031 4 N -0.124 5.124 5 N -0.168 5.168 6 H 0.288 0.712 7 C -0.058 4.058 8 C -0.294 4.294 9 C 0.401 3.599 10 O -0.425 6.425 11 N -0.350 5.350 12 C -0.039 4.039 13 C -0.126 4.126 14 H 0.098 0.902 15 C -0.098 4.098 16 H 0.095 0.905 17 C -0.017 4.017 18 C -0.128 4.128 19 H 0.085 0.915 20 C -0.144 4.144 21 C -0.174 4.174 22 C 0.071 3.929 23 H 0.084 0.916 24 N -0.321 5.321 25 C -0.364 4.364 26 H 0.093 0.907 27 C -0.203 4.203 28 N -0.569 5.569 29 Si 0.739 3.261 30 H -0.206 1.206 31 H -0.219 1.219 32 H -0.219 1.219 33 C 0.076 3.924 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.069 0.931 37 H 0.117 0.883 38 H 0.093 0.907 39 H 0.213 0.787 40 H 0.101 0.899 41 H 0.093 0.907 42 H 0.094 0.906 43 H 0.096 0.904 44 H 0.069 0.931 45 H 0.075 0.925 46 H 0.070 0.930 47 H 0.078 0.922 48 H 0.061 0.939 49 H 0.069 0.931 50 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -11.516 -2.637 15.533 19.516 hybrid contribution 1.220 1.122 -0.827 1.853 sum -10.296 -1.515 14.706 18.016 Atomic orbital electron populations 1.21608 0.93934 1.02026 1.02007 1.20088 0.96594 0.88006 1.03911 1.22459 0.95014 0.96984 0.88643 1.77126 1.21883 0.90834 1.22517 1.46146 1.51750 1.13304 1.05584 0.71211 1.23911 0.96753 0.99669 0.85495 1.20268 1.19107 0.95492 0.94487 1.16785 0.77678 0.82747 0.82698 1.90730 1.45609 1.22413 1.83758 1.48792 1.54166 1.25383 1.06666 1.23236 0.93856 0.87034 0.99736 1.22762 0.97091 0.99139 0.93618 0.90245 1.21926 0.94511 0.98028 0.95301 0.90487 1.22695 0.98447 1.02032 0.78536 1.21915 0.99529 0.95847 0.95512 0.91466 1.21603 0.97122 0.96635 0.98992 1.22186 0.97868 0.99500 0.97838 1.20471 0.90656 0.92094 0.89677 0.91569 1.44551 1.19786 1.54374 1.13363 1.19278 0.94822 1.21124 1.01147 0.90694 1.24788 0.98855 0.99922 0.96760 1.70020 1.38164 1.41061 1.07616 0.86113 0.83764 0.78790 0.77474 1.20632 1.21857 1.21870 1.21066 0.87817 0.93537 0.89934 0.91974 0.91957 0.93091 0.88323 0.90693 0.78669 0.89912 0.90665 0.90554 0.90437 0.93142 0.92507 0.93030 0.92165 0.93881 0.93126 0.93302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 9.89 37.16 0.37 -1.06 16 2 C -0.05 -0.54 5.91 -27.88 -0.16 -0.70 16 3 C 0.14 1.76 6.52 -82.02 -0.53 1.22 16 4 N -0.30 -3.64 12.63 33.89 0.43 -3.21 16 5 N -0.46 -4.12 7.29 30.85 0.22 -3.90 16 6 H 0.44 2.27 8.96 -182.72 -1.64 0.64 16 7 C 0.09 0.90 10.38 -16.56 -0.17 0.72 16 8 C -0.28 -3.58 6.06 -105.06 -0.64 -4.22 16 9 C 0.61 9.12 7.89 -12.52 -0.10 9.02 16 10 O -0.55 -9.52 15.29 5.28 0.08 -9.43 16 11 N -0.62 -8.49 3.31 -170.33 -0.56 -9.05 16 12 C 0.08 1.00 4.98 -2.22 -0.01 0.99 16 13 C -0.10 -1.61 3.31 -89.00 -0.29 -1.91 16 14 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 15 C -0.08 -1.24 3.14 -89.25 -0.28 -1.52 16 16 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 17 C 0.10 1.49 6.36 -2.39 -0.02 1.47 16 18 C -0.11 -1.86 2.91 -89.89 -0.26 -2.12 16 19 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 20 C -0.11 -1.62 5.33 -26.36 -0.14 -1.76 16 21 C -0.13 -2.05 5.52 -26.60 -0.15 -2.20 16 22 C 0.18 3.14 3.18 -67.02 -0.21 2.93 16 23 H 0.07 1.12 7.99 -51.93 -0.42 0.71 16 24 N -0.60 -13.60 2.89 -163.31 -0.47 -14.08 16 25 C -0.23 -6.05 9.99 -15.06 -0.15 -6.20 16 26 H 0.08 1.87 7.79 -52.48 -0.41 1.46 16 27 C -0.01 -0.19 5.47 -17.43 -0.10 -0.29 16 28 N -0.92 -25.79 9.83 55.49 0.55 -25.24 16 29 Si 0.91 21.32 29.55 -169.99 -5.02 16.29 16 30 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 31 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 32 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 33 C 0.20 4.51 4.35 -3.18 -0.01 4.49 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.06 0.54 8.14 -51.92 -0.42 0.12 16 36 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.10 1.26 6.74 -51.93 -0.35 0.91 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.20 1.33 5.07 -52.49 -0.27 1.07 16 40 H 0.08 0.88 5.25 -51.93 -0.27 0.61 16 41 H 0.08 0.75 4.96 -51.93 -0.26 0.49 16 42 H 0.08 1.14 7.84 -51.93 -0.41 0.73 16 43 H 0.08 1.04 5.36 -51.93 -0.28 0.76 16 44 H 0.05 0.67 5.85 -51.93 -0.30 0.37 16 45 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 46 H 0.05 0.64 5.68 -51.93 -0.29 0.34 16 47 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 48 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 49 H 0.05 1.30 7.19 -51.93 -0.37 0.93 16 50 H 0.05 1.25 7.30 -51.93 -0.38 0.87 16 LS Contribution 370.87 15.07 5.59 5.59 Total: -1.00 -31.81 370.87 -10.64 -42.45 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -8.58 Total: 1.72 kcal Atomic # 6 Polarization: 1.73 SS G_CDS: -2.86 Total: -1.13 kcal Atomic # 7 Polarization: -55.64 SS G_CDS: 0.16 Total: -55.48 kcal Atomic # 8 Polarization: -9.52 SS G_CDS: 0.08 Total: -9.43 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.81 -10.64 -42.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087370487.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.636 kcal (2) G-P(sol) polarization free energy of solvation -31.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.448 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds