Wall clock time and date at job start Wed Apr 1 2020 03:42:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50701 * 109.46889 * 2 1 4 4 N 1.30443 * 125.98966 * 90.02226 * 3 2 1 5 5 N 1.39932 * 108.89981 * 179.97438 * 4 3 2 6 6 H 0.97006 * 125.75524 * 180.02562 * 5 4 3 7 7 C 1.34256 * 108.49593 * 0.02562 * 5 4 3 8 8 C 1.38054 * 107.41086 * 359.76757 * 7 5 4 9 9 C 1.47425 * 126.41466 * 180.25366 * 8 7 5 10 10 O 1.21597 * 120.00244 * 188.37244 * 9 8 7 11 11 N 1.34784 * 120.00068 * 8.37565 * 9 8 7 12 12 C 1.48166 * 127.83328 * 6.37938 * 11 9 8 13 13 C 1.54717 * 104.37499 * 140.34003 * 12 11 9 14 14 H 1.09006 * 111.08351 * 264.43627 * 13 12 11 15 15 C 1.54156 * 104.98292 * 24.38927 * 13 12 11 16 16 H 1.08999 * 110.87986 * 239.70371 * 15 13 12 17 17 C 1.48139 * 127.83916 * 186.70068 * 11 9 8 18 18 C 1.53027 * 109.71944 * 116.37657 * 15 13 12 19 19 H 1.09007 * 109.64454 * 180.47582 * 18 15 13 20 20 C 1.53791 * 109.25513 * 301.11320 * 18 15 13 21 21 C 1.52918 * 109.90869 * 59.25935 * 20 18 15 22 22 C 1.53212 * 109.39113 * 141.74211 * 13 12 11 23 23 H 1.08997 * 110.52065 * 67.78977 * 22 13 12 24 24 N 1.47653 * 108.07696 * 188.86213 * 22 13 12 25 25 C 1.36932 * 122.03953 * 238.57989 * 24 22 13 26 26 H 1.08004 * 120.00140 * 0.02562 * 25 24 22 27 27 C 1.38812 * 119.99982 * 179.97438 * 25 24 22 28 28 N 1.31616 * 120.00304 * 359.97438 * 27 25 24 29 29 Si 1.86806 * 120.00197 * 180.02562 * 27 25 24 30 30 H 1.48507 * 109.46790 * 359.97438 * 29 27 25 31 31 H 1.48493 * 109.47238 * 119.99867 * 29 27 25 32 32 H 1.48500 * 109.46985 * 240.00348 * 29 27 25 33 33 C 1.47521 * 115.40203 * 59.58518 * 24 22 13 34 34 H 1.08993 * 109.47474 * 60.00250 * 1 2 3 35 35 H 1.09008 * 109.46891 * 179.97438 * 1 2 3 36 36 H 1.08997 * 109.47521 * 299.99416 * 1 2 3 37 37 H 1.09006 * 109.47398 * 240.00856 * 2 1 3 38 38 H 1.08993 * 109.47474 * 119.99750 * 2 1 3 39 39 H 1.07991 * 126.29812 * 180.02562 * 7 5 4 40 40 H 1.08995 * 110.41860 * 259.14471 * 12 11 9 41 41 H 1.08995 * 110.42008 * 21.61277 * 12 11 9 42 42 H 1.08992 * 110.40145 * 338.21813 * 17 11 9 43 43 H 1.09003 * 110.39877 * 100.50990 * 17 11 9 44 44 H 1.08995 * 109.56392 * 299.04117 * 20 18 15 45 45 H 1.08998 * 109.29156 * 179.30481 * 20 18 15 46 46 H 1.09004 * 109.44480 * 240.59474 * 21 20 18 47 47 H 1.09001 * 109.44445 * 120.69405 * 21 20 18 48 48 H 0.96996 * 120.00672 * 179.97438 * 28 27 25 49 49 H 1.09002 * 108.99508 * 239.95873 * 33 24 22 50 50 H 1.08999 * 110.57134 * 118.95136 * 33 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2881 2.1434 1.0554 5 7 2.7343 3.4043 0.6442 6 1 2.9927 4.1330 1.2301 7 6 2.7446 3.4356 -0.6979 8 6 2.3133 2.2021 -1.1432 9 6 2.1706 1.7798 -2.5485 10 8 1.6370 0.7199 -2.8137 11 7 2.6317 2.5687 -3.5394 12 6 3.4176 3.8185 -3.4149 13 6 4.4564 3.7345 -4.5584 14 1 5.4035 3.3318 -4.1990 15 6 3.8219 2.7976 -5.6053 16 1 4.4509 1.9242 -5.7770 17 6 2.4621 2.3862 -4.9997 18 6 3.5738 3.5676 -6.9042 19 1 3.1174 2.9063 -7.6408 20 6 2.6437 4.7585 -6.6182 21 6 3.2826 5.6803 -5.5787 22 6 4.6524 5.1252 -5.1707 23 1 5.1378 5.7916 -4.4578 24 7 5.4770 4.9783 -6.3867 25 6 6.6741 5.6263 -6.5353 26 1 7.0420 6.2682 -5.7485 27 6 7.4154 5.4572 -7.6966 28 7 6.9679 4.6736 -8.6548 29 14 9.0489 6.3405 -7.8991 30 1 9.3249 7.1543 -6.6879 31 1 10.1324 5.3418 -8.0825 32 1 8.9875 7.2283 -9.0879 33 6 4.9109 4.1068 -7.4337 34 1 -0.3634 0.5137 -0.8899 35 1 -0.3633 -1.0278 -0.0005 36 1 -0.3634 0.5137 0.8900 37 1 1.8934 -0.5137 -0.8901 38 1 1.8934 -0.5137 0.8899 39 1 3.0403 4.2706 -1.3157 40 1 2.7733 4.6876 -3.5468 41 1 3.9181 3.8582 -2.4474 42 1 2.2437 1.3434 -5.2294 43 1 1.6669 3.0313 -5.3733 44 1 1.6890 4.3933 -6.2397 45 1 2.4765 5.3145 -7.5407 46 1 2.6387 5.7390 -4.7012 47 1 3.4067 6.6761 -6.0043 48 1 7.4857 4.5557 -9.4665 49 1 5.5986 3.2815 -7.6185 50 1 4.7482 4.6689 -8.3533 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087370487.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:42:58 Heat of formation + Delta-G solvation = 63.100480 kcal Electronic energy + Delta-G solvation = -31710.864432 eV Core-core repulsion = 27739.784035 eV Total energy + Delta-G solvation = -3971.080397 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.58480 -41.87340 -39.65741 -37.16168 -35.23906 -34.88471 -33.28012 -32.14811 -31.67731 -31.29804 -30.80408 -28.69784 -27.10543 -25.76197 -24.98934 -23.60858 -23.32979 -22.39703 -22.26858 -21.19478 -20.32520 -19.27573 -18.54429 -17.78299 -17.55260 -17.13077 -16.72834 -16.38811 -16.26845 -15.95144 -15.81577 -15.57461 -15.07982 -14.98955 -14.67505 -14.22621 -14.14933 -13.93032 -13.66134 -13.58250 -13.29986 -13.22923 -12.96796 -12.86622 -12.77195 -12.54854 -12.45443 -12.28081 -12.17682 -12.05699 -11.95384 -11.82638 -11.76303 -11.66327 -11.11651 -10.90189 -10.72204 -10.66100 -10.54281 -10.46463 -9.91868 -9.50980 -8.77797 -7.71444 -5.08676 0.53286 1.09071 1.47742 1.48615 1.57677 1.74051 2.11359 2.42589 2.54458 3.39072 3.41488 3.56906 3.64709 3.67183 3.79307 3.90640 4.09343 4.13798 4.19972 4.30443 4.34546 4.35140 4.39509 4.47380 4.48744 4.52637 4.61479 4.69096 4.70422 4.72950 4.83594 4.89815 4.97245 5.05851 5.06297 5.15995 5.17903 5.23895 5.31918 5.32599 5.44457 5.45057 5.51232 5.57472 5.61332 5.69744 5.83124 5.94776 6.25975 6.33796 6.51192 6.68816 7.22881 7.26755 7.95088 8.45670 9.32327 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.019108 B = 0.002905 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.004593 B = 9637.838243 C =10280.730178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.048 4.048 3 C 0.124 3.876 4 N -0.320 5.320 5 N -0.446 5.446 6 H 0.461 0.539 7 C 0.121 3.879 8 C -0.312 4.312 9 C 0.608 3.392 10 O -0.581 6.581 11 N -0.617 5.617 12 C 0.095 3.905 13 C -0.100 4.100 14 H 0.058 0.942 15 C -0.076 4.076 16 H 0.051 0.949 17 C 0.115 3.885 18 C -0.100 4.100 19 H 0.073 0.927 20 C -0.102 4.102 21 C -0.128 4.128 22 C 0.172 3.828 23 H 0.077 0.923 24 N -0.615 5.615 25 C -0.232 4.232 26 H 0.085 0.915 27 C -0.071 4.071 28 N -0.952 5.952 29 Si 0.966 3.034 30 H -0.263 1.263 31 H -0.301 1.301 32 H -0.298 1.298 33 C 0.214 3.786 34 H 0.043 0.957 35 H 0.075 0.925 36 H 0.056 0.944 37 H 0.080 0.920 38 H 0.086 0.914 39 H 0.230 0.770 40 H 0.112 0.888 41 H 0.103 0.897 42 H 0.065 0.935 43 H 0.097 0.903 44 H 0.085 0.915 45 H 0.045 0.955 46 H 0.098 0.902 47 H 0.046 0.954 48 H 0.240 0.760 49 H 0.004 0.996 50 H 0.008 0.992 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.839 -0.091 17.645 21.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.087 4.087 3 C -0.044 4.044 4 N -0.143 5.143 5 N -0.152 5.152 6 H 0.310 0.690 7 C -0.033 4.033 8 C -0.327 4.327 9 C 0.400 3.600 10 O -0.462 6.462 11 N -0.349 5.349 12 C -0.027 4.027 13 C -0.122 4.122 14 H 0.077 0.923 15 C -0.096 4.096 16 H 0.070 0.930 17 C -0.007 4.007 18 C -0.119 4.119 19 H 0.091 0.909 20 C -0.140 4.140 21 C -0.167 4.167 22 C 0.065 3.935 23 H 0.095 0.905 24 N -0.339 5.339 25 C -0.362 4.362 26 H 0.103 0.897 27 C -0.263 4.263 28 N -0.603 5.603 29 Si 0.796 3.204 30 H -0.187 1.187 31 H -0.229 1.229 32 H -0.226 1.226 33 C 0.089 3.911 34 H 0.062 0.938 35 H 0.094 0.906 36 H 0.075 0.925 37 H 0.098 0.902 38 H 0.105 0.895 39 H 0.246 0.754 40 H 0.130 0.870 41 H 0.120 0.880 42 H 0.083 0.917 43 H 0.115 0.885 44 H 0.103 0.897 45 H 0.064 0.936 46 H 0.116 0.884 47 H 0.065 0.935 48 H 0.050 0.950 49 H 0.022 0.978 50 H 0.026 0.974 Dipole moment (debyes) X Y Z Total from point charges -13.018 -0.673 18.765 22.849 hybrid contribution 1.729 0.525 -1.758 2.521 sum -11.289 -0.148 17.007 20.413 Atomic orbital electron populations 1.21541 0.93240 1.02752 1.01273 1.20078 0.97197 0.87947 1.03509 1.22619 0.95272 0.97478 0.89002 1.77085 1.22592 0.92031 1.22562 1.46188 1.50224 1.12882 1.05879 0.69007 1.24246 0.94249 0.99063 0.85717 1.20216 1.21917 0.97233 0.93305 1.17097 0.77105 0.82226 0.83556 1.90712 1.47249 1.23916 1.84347 1.48771 1.54172 1.25870 1.06098 1.23285 0.93075 0.87041 0.99305 1.22573 0.97534 0.97346 0.94702 0.92299 1.21796 0.95603 0.97168 0.95041 0.93035 1.22545 0.97259 1.01815 0.79109 1.21751 0.96925 0.97017 0.96234 0.90890 1.21593 0.97911 0.95457 0.98993 1.22120 0.96873 0.98293 0.99385 1.20804 0.91280 0.93511 0.87859 0.90485 1.44825 1.19840 1.53963 1.15245 1.19710 0.95690 1.20086 1.00747 0.89737 1.25542 1.02097 1.01485 0.97166 1.70273 1.39118 1.43035 1.07863 0.85173 0.80115 0.77511 0.77563 1.18715 1.22865 1.22612 1.20601 0.89739 0.91541 0.89228 0.93822 0.90585 0.92477 0.90196 0.89513 0.75377 0.87038 0.87958 0.91688 0.88494 0.89708 0.93632 0.88422 0.93465 0.95011 0.97824 0.97372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.58 9.89 71.98 0.71 -1.87 16 2 C -0.05 -1.07 5.91 29.85 0.18 -0.89 16 3 C 0.12 2.95 6.52 43.52 0.28 3.23 16 4 N -0.32 -6.87 12.63 -46.68 -0.59 -7.46 16 5 N -0.45 -6.09 7.29 -56.32 -0.41 -6.50 16 6 H 0.46 2.62 8.96 -213.42 -1.91 0.70 16 7 C 0.12 1.75 10.38 84.28 0.87 2.62 16 8 C -0.31 -7.16 6.06 -20.15 -0.12 -7.28 16 9 C 0.61 16.94 7.89 86.66 0.68 17.62 16 10 O -0.58 -19.96 15.29 -4.02 -0.06 -20.02 16 11 N -0.62 -15.06 3.31 -811.06 -2.69 -17.75 16 12 C 0.09 1.81 4.98 86.64 0.43 2.24 16 13 C -0.10 -2.87 3.31 -9.75 -0.03 -2.91 16 14 H 0.06 1.94 8.14 -2.38 -0.02 1.92 16 15 C -0.08 -2.38 3.14 -9.91 -0.03 -2.41 16 16 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 17 C 0.11 3.00 6.36 86.55 0.55 3.55 16 18 C -0.10 -3.41 2.91 -10.32 -0.03 -3.44 16 19 H 0.07 2.38 8.14 -2.38 -0.02 2.36 16 20 C -0.10 -2.86 5.33 30.83 0.16 -2.70 16 21 C -0.13 -3.41 5.52 30.68 0.17 -3.24 16 22 C 0.17 5.60 3.18 44.95 0.14 5.75 16 23 H 0.08 2.35 7.99 -2.39 -0.02 2.33 16 24 N -0.62 -28.28 2.89 -670.58 -1.94 -30.21 16 25 C -0.23 -12.08 9.99 84.03 0.84 -11.24 16 26 H 0.08 4.13 7.79 -2.91 -0.02 4.11 16 27 C -0.07 -3.89 5.47 84.86 0.46 -3.43 16 28 N -0.95 -56.34 9.83 21.65 0.21 -56.13 16 29 Si 0.97 44.82 29.55 68.60 2.03 46.85 16 30 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 31 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 32 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 33 C 0.21 10.08 4.35 86.38 0.38 10.46 16 34 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 36 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.08 2.07 6.74 -2.38 -0.02 2.05 16 38 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.23 1.59 5.07 -2.92 -0.01 1.57 16 40 H 0.11 1.56 5.25 -2.39 -0.01 1.55 16 41 H 0.10 1.44 4.96 -2.39 -0.01 1.43 16 42 H 0.06 1.88 7.84 -2.39 -0.02 1.86 16 43 H 0.10 2.19 5.36 -2.39 -0.01 2.18 16 44 H 0.08 1.85 5.85 -2.39 -0.01 1.83 16 45 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 46 H 0.10 1.75 5.68 -2.38 -0.01 1.74 16 47 H 0.05 1.41 8.14 -2.39 -0.02 1.40 16 48 H 0.24 14.04 8.31 -92.71 -0.77 13.27 16 49 H 0.00 0.20 7.19 -2.39 -0.02 0.18 16 50 H 0.01 0.44 7.30 -2.39 -0.02 0.42 16 Total: -1.00 -74.91 370.87 1.28 -73.63 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -0.93 Total: 11.53 kcal Atomic # 6 Polarization: 0.42 SS G_CDS: 5.65 Total: 6.07 kcal Atomic # 7 Polarization: -112.64 SS G_CDS: -5.41 Total: -118.05 kcal Atomic # 8 Polarization: -19.96 SS G_CDS: -0.06 Total: -20.02 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Total: -74.91 1.28 -73.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087370487.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.728 kcal (2) G-P(sol) polarization free energy of solvation -74.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds