Wall clock time and date at job start Wed Apr 1 2020 03:22:02
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50694 * 1
3 3 N 1.30858 * 125.42129 * 2 1
4 4 C 1.33320 * 109.68984 * 180.02562 * 3 2 1
5 5 C 1.36664 * 107.78316 * 0.02562 * 4 3 2
6 6 C 1.46761 * 126.84396 * 179.97438 * 5 4 3
7 7 O 1.21683 * 120.00268 * 185.55795 * 6 5 4
8 8 N 1.34781 * 120.00081 * 5.56468 * 6 5 4
9 9 C 1.49366 * 125.97504 * 175.84870 * 8 6 5
10 10 C 1.54271 * 102.79094 * 153.13985 * 9 8 6
11 11 H 1.09003 * 113.13906 * 284.90566 * 10 9 8
12 12 C 1.56612 * 96.39391 * 44.45800 * 10 9 8
13 13 H 1.08995 * 101.48310 * 59.63597 * 12 10 9
14 14 C 1.48273 * 103.69583 * 311.73497 * 12 10 9
15 15 C 1.49750 * 108.54827 * 168.73451 * 12 10 9
16 16 H 1.09007 * 114.85504 * 151.34878 * 15 12 10
17 17 C 1.56439 * 107.37827 * 23.30541 * 15 12 10
18 18 C 1.53865 * 108.27794 * 288.52218 * 17 15 12
19 19 C 1.53476 * 116.92724 * 151.00057 * 10 9 8
20 20 H 1.09006 * 112.83228 * 49.53212 * 19 10 9
21 21 C 1.54234 * 109.58375 * 282.02910 * 19 10 9
22 22 N 1.46682 * 107.48070 * 287.58356 * 21 19 10
23 23 C 1.36942 * 124.11465 * 217.75426 * 22 21 19
24 24 H 1.07997 * 119.99886 * 161.18947 * 23 22 21
25 25 C 1.38808 * 119.99916 * 341.19632 * 23 22 21
26 26 N 1.31620 * 120.00295 * 349.87286 * 25 23 22
27 27 Si 1.86806 * 120.00033 * 169.87788 * 25 23 22
28 28 H 1.48494 * 109.47166 * 94.95620 * 27 25 23
29 29 H 1.48499 * 109.47268 * 214.95833 * 27 25 23
30 30 H 1.48501 * 109.47036 * 334.95488 * 27 25 23
31 31 N 1.34500 * 125.41757 * 180.32150 * 2 1 3
32 32 C 1.46500 * 126.47367 * 359.97411 * 31 2 1
33 33 H 1.08997 * 109.47463 * 89.96881 * 1 2 3
34 34 H 1.09000 * 109.46853 * 209.97442 * 1 2 3
35 35 H 1.09004 * 109.46789 * 329.97094 * 1 2 3
36 36 H 1.07997 * 126.10767 * 179.97438 * 4 3 2
37 37 H 1.08995 * 110.74839 * 34.81130 * 9 8 6
38 38 H 1.09000 * 110.74256 * 271.46192 * 9 8 6
39 39 H 1.09005 * 110.52510 * 151.91489 * 14 12 10
40 40 H 1.08993 * 110.53590 * 274.68257 * 14 12 10
41 41 H 1.09005 * 109.60481 * 169.05119 * 17 15 12
42 42 H 1.08998 * 110.24369 * 48.37260 * 17 15 12
43 43 H 1.08994 * 109.92768 * 276.73798 * 18 17 15
44 44 H 1.09003 * 109.99529 * 155.57592 * 18 17 15
45 45 H 1.09000 * 110.02626 * 46.48803 * 21 19 10
46 46 H 1.08998 * 110.02884 * 167.95254 * 21 19 10
47 47 H 0.97009 * 120.00171 * 179.97438 * 26 25 23
48 48 H 1.08992 * 109.47134 * 264.66894 * 32 31 2
49 49 H 1.09003 * 109.46570 * 24.66978 * 32 31 2
50 50 H 1.09001 * 109.46422 * 144.66510 * 32 31 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5069 0.0000 0.0000
3 7 2.2654 1.0664 0.0000
4 6 3.5486 0.7049 -0.0006
5 6 3.5976 -0.6609 -0.0015
6 6 4.8028 -1.4983 -0.0029
7 8 4.7040 -2.7067 -0.1057
8 7 6.0192 -0.9289 0.1098
9 6 7.3213 -1.6536 0.2108
10 6 8.3246 -0.6360 -0.3705
11 1 8.2734 -0.5564 -1.4564
12 6 7.7635 0.6145 0.3874
13 1 7.8857 0.3110 1.4271
14 6 6.3010 0.5384 0.1555
15 6 8.7329 1.7443 0.2254
16 1 8.2871 2.7385 0.2566
17 6 9.5701 1.4602 -1.0652
18 6 10.5233 0.2881 -0.7737
19 6 9.7638 -0.6989 0.1589
20 1 10.1772 -1.7074 0.1413
21 6 9.8339 -0.0298 1.5467
22 7 9.7042 1.4173 1.3453
23 6 10.3934 2.3576 2.0637
24 1 10.4916 3.3633 1.6824
25 6 10.9659 2.0181 3.2817
26 7 10.6833 0.8612 3.8421
27 14 12.1374 3.2033 4.1259
28 1 11.3869 4.0251 5.1090
29 1 13.1970 2.4359 4.8284
30 1 12.7596 4.0912 3.1111
31 7 2.2864 -1.0961 -0.0062
32 6 1.8311 -2.4885 -0.0134
33 1 -0.3634 0.0006 -1.0276
34 1 -0.3633 -0.8902 0.5134
35 1 -0.3633 0.8898 0.5143
36 1 4.3978 1.3722 -0.0011
37 1 7.3040 -2.5640 -0.3883
38 1 7.5583 -1.8787 1.2506
39 1 5.7588 1.0064 0.9773
40 1 6.0393 1.0077 -0.7928
41 1 10.1496 2.3454 -1.3274
42 1 8.9107 1.1975 -1.8923
43 1 11.4207 0.6542 -0.2750
44 1 10.7934 -0.2127 -1.7035
45 1 9.0135 -0.3812 2.1724
46 1 10.7892 -0.2539 2.0214
47 1 11.0838 0.6238 4.6932
48 1 1.8093 -2.8690 1.0077
49 1 0.8303 -2.5412 -0.4423
50 1 2.5148 -3.0911 -0.6113
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001087383100.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:22:02
Heat of formation + Delta-G solvation = 99.982538 kcal
Electronic energy + Delta-G solvation = -31685.148962 eV
Core-core repulsion = 27715.667891 eV
Total energy + Delta-G solvation = -3969.481071 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 344.195 amu
Computer time = 1.14 seconds
Orbital eigenvalues (eV)
-43.37339 -42.50545 -40.05284 -37.46865 -35.21751 -34.88073 -33.16183 -32.51453
-31.61849 -31.43824 -29.51873 -28.46359 -27.52584 -27.45934 -25.31167 -23.46412
-23.38354 -22.50923 -21.72748 -21.28737 -20.47988 -19.02340 -18.48014 -18.14643
-17.57711 -17.20555 -17.01702 -16.86170 -16.23832 -16.07235 -15.90275 -15.75950
-14.94173 -14.78326 -14.42517 -14.25127 -14.22045 -14.16730 -13.79419 -13.65992
-13.58952 -13.29131 -13.16411 -13.02646 -12.91309 -12.74396 -12.64772 -12.58331
-12.41545 -12.08957 -12.06985 -11.76695 -11.73740 -11.49294 -11.11293 -10.96591
-10.83763 -10.77725 -10.62837 -10.30446 -9.85529 -9.50544 -8.65981 -7.79603
-5.16339 0.20149 1.28687 1.47296 1.48699 1.57133 1.72178 2.03970
2.20602 2.51891 3.13451 3.33337 3.37619 3.47463 3.52027 3.77975
3.84478 3.90971 3.92988 4.15774 4.23243 4.28900 4.32272 4.33276
4.42367 4.44534 4.50489 4.55480 4.60215 4.67589 4.72441 4.73268
4.77558 4.86769 4.92750 4.95266 5.03197 5.04145 5.08018 5.15850
5.30175 5.34521 5.43664 5.47061 5.55311 5.57795 5.74242 5.78436
5.87217 6.05647 6.30238 6.33734 6.78837 6.96841 7.17152 7.82973
8.48753 9.28142
Molecular weight = 344.20amu
Principal moments of inertia in cm(-1)
A = 0.016515 B = 0.002959 C = 0.002786
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1695.047959 B = 9458.937373 C =10046.227475
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.070 4.070
2 C 0.231 3.769
3 N -0.527 5.527
4 C 0.031 3.969
5 C -0.111 4.111
6 C 0.607 3.393
7 O -0.584 6.584
8 N -0.609 5.609
9 C 0.122 3.878
10 C -0.082 4.082
11 H 0.116 0.884
12 C -0.150 4.150
13 H 0.061 0.939
14 C 0.131 3.869
15 C 0.179 3.821
16 H 0.092 0.908
17 C -0.117 4.117
18 C -0.091 4.091
19 C -0.103 4.103
20 H 0.089 0.911
21 C 0.193 3.807
22 N -0.614 5.614
23 C -0.230 4.230
24 H 0.075 0.925
25 C -0.063 4.063
26 N -0.946 5.946
27 Si 0.964 3.036
28 H -0.292 1.292
29 H -0.300 1.300
30 H -0.269 1.269
31 N -0.432 5.432
32 C 0.066 3.934
33 H 0.104 0.896
34 H 0.100 0.900
35 H 0.099 0.901
36 H 0.199 0.801
37 H 0.084 0.916
38 H 0.056 0.944
39 H 0.078 0.922
40 H 0.101 0.899
41 H 0.052 0.948
42 H 0.082 0.918
43 H 0.036 0.964
44 H 0.071 0.929
45 H -0.009 1.009
46 H 0.042 0.958
47 H 0.243 0.757
48 H 0.082 0.918
49 H 0.127 0.873
50 H 0.083 0.917
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -17.563 -4.317 -12.796 22.155
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.128 4.128
2 C -0.031 4.031
3 N -0.246 5.246
4 C -0.123 4.123
5 C -0.227 4.227
6 C 0.397 3.603
7 O -0.466 6.466
8 N -0.341 5.341
9 C 0.001 3.999
10 C -0.101 4.101
11 H 0.134 0.866
12 C -0.170 4.170
13 H 0.079 0.921
14 C 0.010 3.990
15 C 0.074 3.926
16 H 0.110 0.890
17 C -0.156 4.156
18 C -0.129 4.129
19 C -0.123 4.123
20 H 0.107 0.893
21 C 0.067 3.933
22 N -0.339 5.339
23 C -0.360 4.360
24 H 0.093 0.907
25 C -0.256 4.256
26 N -0.595 5.595
27 Si 0.794 3.206
28 H -0.219 1.219
29 H -0.227 1.227
30 H -0.194 1.194
31 N -0.113 5.113
32 C -0.075 4.075
33 H 0.122 0.878
34 H 0.119 0.881
35 H 0.118 0.882
36 H 0.216 0.784
37 H 0.102 0.898
38 H 0.075 0.925
39 H 0.096 0.904
40 H 0.119 0.881
41 H 0.070 0.930
42 H 0.101 0.899
43 H 0.054 0.946
44 H 0.090 0.910
45 H 0.008 0.992
46 H 0.061 0.939
47 H 0.053 0.947
48 H 0.101 0.899
49 H 0.145 0.855
50 H 0.102 0.898
Dipole moment (debyes) X Y Z Total
from point charges -17.931 -4.398 -12.638 22.374
hybrid contribution 1.492 -0.427 1.481 2.146
sum -16.439 -4.825 -11.157 20.445
Atomic orbital electron populations
1.20523 0.80929 1.05861 1.05501 1.24397 0.97651 0.80464 1.00580
1.70176 1.02500 1.29363 1.22574 1.23570 0.95960 0.91777 1.00969
1.20561 0.85647 0.95075 1.21378 1.16535 0.81603 0.85900 0.76246
1.90737 1.86733 1.15203 1.53957 1.49312 1.05068 1.08632 1.71060
1.22352 0.81111 0.95891 1.00565 1.23013 0.93145 0.93810 1.00132
0.86647 1.21911 0.93535 0.98219 1.03285 0.92098 1.21185 0.95155
0.79748 1.02897 1.21520 0.87580 0.95381 0.88099 0.89011 1.22751
0.98023 0.97714 0.97081 1.21929 0.97559 0.95669 0.97745 1.22497
0.94481 0.98686 0.96608 0.89329 1.20644 0.97713 0.83176 0.91737
1.45926 1.47070 1.01392 1.39514 1.19452 1.25034 0.93188 0.98325
0.90726 1.25592 1.03580 0.99021 0.97409 1.70142 1.47489 1.23849
1.18015 0.85280 0.78618 0.78307 0.78429 1.21905 1.22675 1.19373
1.45301 1.04452 1.09528 1.51990 1.22411 1.03177 0.77156 1.04756
0.87787 0.88107 0.88239 0.78447 0.89761 0.92547 0.90375 0.88102
0.92950 0.89928 0.94551 0.91023 0.99151 0.93948 0.94744 0.89940
0.85453 0.89794
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -0.70 9.92 71.23 0.71 0.01 16
2 C 0.23 4.91 7.88 138.19 1.09 5.99 16
3 N -0.53 -14.10 11.20 -187.40 -2.10 -16.20 16
4 C 0.03 0.85 10.45 84.10 0.88 1.73 16
5 C -0.11 -3.13 6.89 40.01 0.28 -2.86 16
6 C 0.61 19.21 7.84 86.47 0.68 19.89 16
7 O -0.58 -20.87 15.26 -4.30 -0.07 -20.94 16
8 N -0.61 -18.07 3.42 -817.20 -2.80 -20.87 16
9 C 0.12 3.68 6.40 86.25 0.55 4.23 16
10 C -0.08 -2.34 2.80 -8.94 -0.03 -2.37 16
11 H 0.12 2.79 6.75 -2.39 -0.02 2.78 16
12 C -0.15 -4.74 2.37 -12.06 -0.03 -4.77 16
13 H 0.06 2.51 4.07 -2.39 -0.01 2.50 16
14 C 0.13 3.49 4.84 84.31 0.41 3.90 16
15 C 0.18 6.23 4.86 44.10 0.21 6.45 16
16 H 0.09 3.05 8.14 -2.38 -0.02 3.03 16
17 C -0.12 -3.42 5.66 32.08 0.18 -3.24 16
18 C -0.09 -2.91 5.54 31.78 0.18 -2.73 16
19 C -0.10 -3.46 3.98 -9.32 -0.04 -3.50 16
20 H 0.09 2.76 8.14 -2.38 -0.02 2.74 16
21 C 0.19 8.82 4.04 86.76 0.35 9.17 16
22 N -0.61 -28.45 2.15 -661.10 -1.42 -29.88 16
23 C -0.23 -12.11 10.14 84.03 0.85 -11.26 16
24 H 0.07 3.79 7.85 -2.91 -0.02 3.77 16
25 C -0.06 -3.46 5.26 84.86 0.45 -3.01 16
26 N -0.95 -55.82 10.76 21.65 0.23 -55.58 16
27 Si 0.96 45.11 29.57 68.60 2.03 47.14 16
28 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16
29 H -0.30 -14.31 7.11 99.48 0.71 -13.61 16
30 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16
31 N -0.43 -10.00 3.17 -524.95 -1.67 -11.66 16
32 C 0.07 1.07 10.29 127.77 1.31 2.39 16
33 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16
34 H 0.10 0.52 7.56 -2.39 -0.02 0.50 16
35 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16
36 H 0.20 4.66 4.47 -2.91 -0.01 4.65 16
37 H 0.08 2.42 8.01 -2.39 -0.02 2.40 16
38 H 0.06 1.94 7.57 -2.39 -0.02 1.93 16
39 H 0.08 2.12 6.68 -2.38 -0.02 2.10 16
40 H 0.10 2.13 7.40 -2.39 -0.02 2.11 16
41 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16
42 H 0.08 1.91 6.92 -2.39 -0.02 1.89 16
43 H 0.04 1.41 7.72 -2.39 -0.02 1.39 16
44 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16
45 H -0.01 -0.46 5.97 -2.39 -0.01 -0.48 16
46 H 0.04 2.29 6.45 -2.39 -0.02 2.28 16
47 H 0.24 14.17 8.31 -92.70 -0.77 13.40 16
48 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16
49 H 0.13 0.96 7.39 -2.39 -0.02 0.94 16
50 H 0.08 1.73 6.69 -2.39 -0.02 1.71 16
Total: -1.00 -73.01 372.81 3.21 -69.80
By element:
Atomic # 1 Polarization: 17.21 SS G_CDS: 0.97 Total: 18.18 kcal
Atomic # 6 Polarization: 11.98 SS G_CDS: 8.03 Total: 20.01 kcal
Atomic # 7 Polarization: -126.44 SS G_CDS: -7.75 Total: -134.19 kcal
Atomic # 8 Polarization: -20.87 SS G_CDS: -0.07 Total: -20.94 kcal
Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal
Total: -73.01 3.21 -69.80 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001087383100.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 169.782 kcal
(2) G-P(sol) polarization free energy of solvation -73.007 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.775 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.207 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.800 kcal
(6) G-S(sol) free energy of system = (1) + (5) 99.983 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.14 seconds