Wall clock time and date at job start Wed Apr 1 2020 02:49:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50700 * 1
3 3 N 1.30856 * 125.41472 * 2 1
4 4 C 1.33318 * 109.68183 * 179.97438 * 3 2 1
5 5 C 1.50699 * 126.10398 * 180.02562 * 4 3 2
6 6 C 1.36665 * 107.78926 * 0.02562 * 4 3 2
7 7 C 1.46762 * 126.84525 * 179.97438 * 6 4 3
8 8 O 1.21676 * 120.00041 * 256.06638 * 7 6 4
9 9 N 1.34778 * 119.99661 * 76.07485 * 7 6 4
10 10 C 1.48165 * 127.83675 * 355.04322 * 9 7 6
11 11 C 1.54368 * 104.54811 * 140.31346 * 10 9 7
12 12 H 1.09006 * 110.92064 * 263.66477 * 11 10 9
13 13 C 1.54150 * 105.54710 * 23.86522 * 11 10 9
14 14 H 1.08999 * 110.88000 * 240.12874 * 13 11 10
15 15 C 1.48141 * 127.83512 * 175.01126 * 9 7 6
16 16 C 1.53026 * 109.71752 * 116.80289 * 13 11 10
17 17 H 1.09008 * 109.64470 * 180.49849 * 16 13 11
18 18 C 1.53068 * 109.16573 * 300.62357 * 16 13 11
19 19 C 1.55444 * 110.31842 * 58.68926 * 18 16 13
20 20 C 1.53202 * 109.00299 * 141.33445 * 11 10 9
21 21 H 1.09006 * 110.51901 * 67.98555 * 20 11 10
22 22 N 1.47650 * 108.07982 * 189.05438 * 20 11 10
23 23 C 1.36941 * 122.04134 * 239.17206 * 22 20 11
24 24 H 1.08002 * 120.00087 * 359.97438 * 23 22 20
25 25 C 1.38807 * 120.00000 * 179.97438 * 23 22 20
26 26 N 1.31624 * 120.00130 * 0.02562 * 25 23 22
27 27 Si 1.86805 * 120.00334 * 179.97438 * 25 23 22
28 28 H 1.48500 * 109.46698 * 59.99760 * 27 25 23
29 29 H 1.48494 * 109.47301 * 180.02562 * 27 25 23
30 30 H 1.48497 * 109.46750 * 300.00391 * 27 25 23
31 31 C 1.46392 * 116.65949 * 57.89986 * 22 20 11
32 32 N 1.34491 * 125.41872 * 180.23660 * 2 1 3
33 33 H 0.97007 * 126.47514 * 0.04884 * 32 2 1
34 34 H 1.08999 * 109.47601 * 90.02198 * 1 2 3
35 35 H 1.09005 * 109.47188 * 210.01828 * 1 2 3
36 36 H 1.08996 * 109.47651 * 330.02207 * 1 2 3
37 37 H 1.09003 * 109.47494 * 270.00287 * 5 4 3
38 38 H 1.08992 * 109.47279 * 30.00498 * 5 4 3
39 39 H 1.09008 * 109.46989 * 150.00715 * 5 4 3
40 40 H 1.08997 * 110.41693 * 21.54597 * 10 9 7
41 41 H 1.08999 * 110.42492 * 259.07891 * 10 9 7
42 42 H 1.08991 * 110.40045 * 338.26307 * 15 9 7
43 43 H 1.08997 * 110.40143 * 100.56322 * 15 9 7
44 44 H 1.09004 * 109.38560 * 179.43924 * 18 16 13
45 45 H 1.09002 * 109.38327 * 299.11093 * 18 16 13
46 46 H 1.08994 * 110.57991 * 241.84306 * 19 18 16
47 47 H 1.08991 * 109.62008 * 121.11442 * 19 18 16
48 48 H 0.96998 * 119.99918 * 179.97438 * 26 25 23
49 49 H 1.08994 * 110.38454 * 241.50477 * 31 22 20
50 50 H 1.09001 * 109.90850 * 120.02024 * 31 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2653 1.0664 0.0000
4 6 3.5485 0.7050 0.0006
5 6 4.7334 1.6361 0.0013
6 6 3.5976 -0.6608 0.0004
7 6 4.8029 -1.4982 0.0003
8 8 5.1578 -2.0535 -1.0225
9 7 5.5165 -1.6521 1.1332
10 6 5.3045 -0.9842 2.4387
11 6 5.5683 -2.0872 3.4859
12 1 4.6352 -2.5510 3.8062
13 6 6.4805 -3.1131 2.7847
14 1 6.0050 -4.0931 2.7461
15 6 6.6903 -2.5280 1.3559
16 6 7.8306 -3.1786 3.5021
17 1 8.4778 -3.8979 3.0000
18 6 8.4820 -1.7937 3.4747
19 6 7.5579 -0.7490 4.1609
20 6 6.3108 -1.4756 4.6783
21 1 5.6629 -0.7853 5.2186
22 7 6.7452 -2.5765 5.5612
23 6 6.3463 -2.6599 6.8686
24 1 5.6942 -1.9054 7.2833
25 6 6.7801 -3.7140 7.6607
26 7 7.5752 -4.6331 7.1553
27 14 6.2366 -3.8274 9.4443
28 1 4.7557 -3.9182 9.5056
29 1 6.8335 -5.0357 10.0678
30 1 6.6890 -2.6178 10.1774
31 6 7.6056 -3.5983 4.9622
32 7 2.2864 -1.0960 -0.0045
33 1 1.9850 -2.0180 -0.0090
34 1 -0.3634 -0.0004 -1.0276
35 1 -0.3634 -0.8899 0.5141
36 1 -0.3634 0.8901 0.5135
37 1 5.0196 1.8609 -1.0262
38 1 4.4690 2.5602 0.5152
39 1 5.5688 1.1607 0.5154
40 1 4.2798 -0.6214 2.5182
41 1 6.0104 -0.1633 2.5650
42 1 6.7092 -3.3321 0.6204
43 1 7.6118 -1.9480 1.3074
44 1 9.4397 -1.8341 3.9936
45 1 8.6453 -1.4911 2.4403
46 1 7.2599 0.0233 3.4519
47 1 8.0835 -0.2893 4.9978
48 1 7.8786 -5.3695 7.7090
49 1 7.1195 -4.5732 4.9992
50 1 8.5585 -3.6370 5.4900
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001087390484.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 02:49:07
Heat of formation + Delta-G solvation = 62.415913 kcal
Electronic energy + Delta-G solvation = -31844.942347 eV
Core-core repulsion = 27873.832265 eV
Total energy + Delta-G solvation = -3971.110082 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 344.195 amu
Computer time = 0.97 seconds
Orbital eigenvalues (eV)
-42.41030 -40.73211 -38.74299 -35.84615 -33.67016 -33.28231 -32.35167 -31.77976
-30.27347 -29.91703 -29.37519 -27.75815 -26.53917 -25.36110 -23.91752 -22.10113
-21.64920 -21.19441 -20.94435 -20.72742 -19.43912 -17.95950 -17.23669 -16.85333
-16.44738 -15.84177 -15.67620 -15.32303 -14.99454 -14.77509 -14.43011 -13.96283
-13.76191 -13.67292 -13.44150 -13.21443 -12.84756 -12.74384 -12.63352 -12.43140
-12.36043 -12.26014 -12.18264 -12.16314 -11.57619 -11.34342 -11.15892 -10.95229
-10.85019 -10.65980 -10.59036 -10.45154 -10.23072 -10.14609 -10.01922 -9.78386
-9.73530 -9.39061 -9.24204 -8.64874 -8.51239 -8.45086 -6.90070 -5.68906
-3.07371 1.49439 2.10537 2.68536 2.86945 3.25053 3.37283 3.42399
3.43214 4.05943 4.41377 4.45947 4.67881 4.82714 4.88596 4.96839
5.07564 5.12101 5.16691 5.29695 5.36680 5.42814 5.49385 5.52597
5.54636 5.55764 5.61894 5.65673 5.67963 5.77263 5.80362 5.82945
5.94808 6.02438 6.05999 6.10346 6.15322 6.27209 6.42389 6.43850
6.46315 6.64779 6.71796 6.78839 6.89052 6.95342 7.04214 7.47474
7.60971 7.69273 7.77107 7.89789 7.99526 8.30612 9.24169 9.84621
10.35839 11.34491
Molecular weight = 344.20amu
Principal moments of inertia in cm(-1)
A = 0.014791 B = 0.003201 C = 0.002918
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1892.547133 B = 8744.934989 C = 9592.416983
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.070 4.070
2 C 0.226 3.774
3 N -0.487 5.487
4 C 0.060 3.940
5 C -0.075 4.075
6 C -0.067 4.067
7 C 0.612 3.388
8 O -0.537 6.537
9 N -0.604 5.604
10 C 0.098 3.902
11 C -0.107 4.107
12 H 0.076 0.924
13 C -0.076 4.076
14 H 0.077 0.923
15 C 0.101 3.899
16 C -0.110 4.110
17 H 0.066 0.934
18 C -0.105 4.105
19 C -0.135 4.135
20 C 0.182 3.818
21 H 0.067 0.933
22 N -0.598 5.598
23 C -0.238 4.238
24 H 0.074 0.926
25 C -0.007 4.007
26 N -0.923 5.923
27 Si 0.909 3.091
28 H -0.286 1.286
29 H -0.291 1.291
30 H -0.285 1.285
31 C 0.205 3.795
32 N -0.540 5.540
33 H 0.423 0.577
34 H 0.083 0.917
35 H 0.076 0.924
36 H 0.094 0.906
37 H 0.073 0.927
38 H 0.078 0.922
39 H 0.070 0.930
40 H 0.071 0.929
41 H 0.087 0.913
42 H 0.075 0.925
43 H 0.084 0.916
44 H 0.058 0.942
45 H 0.049 0.951
46 H 0.055 0.945
47 H 0.061 0.939
48 H 0.251 0.749
49 H 0.046 0.954
50 H 0.054 0.946
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.811 8.120 -13.357 17.475
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.129 4.129
2 C -0.037 4.037
3 N -0.208 5.208
4 C -0.073 4.073
5 C -0.132 4.132
6 C -0.184 4.184
7 C 0.398 3.602
8 O -0.414 6.414
9 N -0.336 5.336
10 C -0.025 4.025
11 C -0.129 4.129
12 H 0.095 0.905
13 C -0.096 4.096
14 H 0.095 0.905
15 C -0.020 4.020
16 C -0.130 4.130
17 H 0.084 0.916
18 C -0.142 4.142
19 C -0.174 4.174
20 C 0.073 3.927
21 H 0.085 0.915
22 N -0.321 5.321
23 C -0.367 4.367
24 H 0.091 0.909
25 C -0.202 4.202
26 N -0.570 5.570
27 Si 0.740 3.260
28 H -0.213 1.213
29 H -0.217 1.217
30 H -0.212 1.212
31 C 0.081 3.919
32 N -0.144 5.144
33 H 0.262 0.738
34 H 0.102 0.898
35 H 0.095 0.905
36 H 0.113 0.887
37 H 0.092 0.908
38 H 0.097 0.903
39 H 0.089 0.911
40 H 0.089 0.911
41 H 0.105 0.895
42 H 0.093 0.907
43 H 0.102 0.898
44 H 0.077 0.923
45 H 0.067 0.933
46 H 0.073 0.927
47 H 0.080 0.920
48 H 0.062 0.938
49 H 0.064 0.936
50 H 0.072 0.928
Dipole moment (debyes) X Y Z Total
from point charges -7.857 8.485 -13.849 18.042
hybrid contribution -0.246 -1.534 0.977 1.835
sum -8.102 6.951 -12.873 16.723
Atomic orbital electron populations
1.20259 0.84273 1.04508 1.03833 1.23297 0.95702 0.81267 1.03481
1.69968 1.01487 1.28243 1.21118 1.20877 0.93346 0.89834 1.03279
1.20166 0.92490 0.97780 1.02808 1.20513 0.84736 0.95085 1.18078
1.16406 0.81729 0.79789 0.82287 1.90839 1.70683 1.48482 1.31357
1.48916 1.30922 1.43411 1.10368 1.22931 1.01817 0.96585 0.81156
1.22707 0.99492 0.95061 0.95631 0.90510 1.22190 0.97080 0.98406
0.91887 0.90485 1.23048 0.87726 0.93659 0.97566 1.21826 0.94212
0.96646 1.00302 0.91556 1.21891 0.98576 0.95022 0.98713 1.22629
0.98232 0.97144 0.99445 1.20467 0.92768 0.90147 0.89325 0.91480
1.44309 1.56472 1.23740 1.07575 1.19244 1.24345 1.07201 0.85931
0.90858 1.24787 0.99772 0.97399 0.98278 1.70041 1.37936 1.14337
1.34720 0.86246 0.77978 0.77005 0.84789 1.21313 1.21680 1.21214
1.20920 0.95225 0.90928 0.84828 1.42987 1.05190 1.10362 1.55892
0.73836 0.89850 0.90476 0.88692 0.90837 0.90283 0.91110 0.91082
0.89497 0.90659 0.89816 0.92334 0.93297 0.92673 0.91999 0.93806
0.93553 0.92760
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -0.44 10.51 36.01 0.38 -0.06 16
2 C 0.23 2.43 8.12 -155.62 -1.26 1.17 16
3 N -0.49 -6.45 11.20 -6.85 -0.08 -6.53 16
4 C 0.06 0.79 7.15 -82.52 -0.59 0.20 16
5 C -0.07 -0.82 10.24 36.00 0.37 -0.45 16
6 C -0.07 -0.91 5.80 -82.14 -0.48 -1.38 16
7 C 0.61 9.27 7.39 -12.82 -0.09 9.18 16
8 O -0.54 -9.78 17.41 5.21 0.09 -9.69 16
9 N -0.60 -8.47 3.32 -169.92 -0.56 -9.04 16
10 C 0.10 1.30 6.19 -2.41 -0.01 1.28 16
11 C -0.11 -1.71 3.29 -89.20 -0.29 -2.01 16
12 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16
13 C -0.08 -1.21 3.21 -88.50 -0.28 -1.49 16
14 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16
15 C 0.10 1.43 6.35 -1.63 -0.01 1.42 16
16 C -0.11 -1.90 2.89 -90.27 -0.26 -2.16 16
17 H 0.07 1.07 8.14 -51.92 -0.42 0.64 16
18 C -0.10 -1.63 5.36 -25.40 -0.14 -1.76 16
19 C -0.14 -2.14 5.73 -25.26 -0.14 -2.28 16
20 C 0.18 3.29 3.17 -67.02 -0.21 3.08 16
21 H 0.07 1.22 7.99 -51.93 -0.42 0.80 16
22 N -0.60 -13.76 2.85 -164.21 -0.47 -14.23 16
23 C -0.24 -6.20 9.98 -15.06 -0.15 -6.35 16
24 H 0.07 1.85 7.79 -52.49 -0.41 1.44 16
25 C -0.01 -0.18 5.46 -17.43 -0.10 -0.27 16
26 N -0.92 -25.78 9.66 55.49 0.54 -25.24 16
27 Si 0.91 21.39 29.55 -169.99 -5.02 16.36 16
28 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16
29 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16
30 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16
31 C 0.21 4.64 4.31 -3.80 -0.02 4.62 16
32 N -0.54 -5.96 6.19 -7.02 -0.04 -6.00 16
33 H 0.42 3.59 8.96 -40.82 -0.37 3.23 16
34 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16
35 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16
36 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16
37 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16
38 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16
39 H 0.07 0.75 7.91 -51.92 -0.41 0.34 16
40 H 0.07 0.93 7.39 -51.93 -0.38 0.55 16
41 H 0.09 1.08 5.16 -51.93 -0.27 0.81 16
42 H 0.07 1.09 7.93 -51.93 -0.41 0.68 16
43 H 0.08 1.12 5.35 -51.93 -0.28 0.84 16
44 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16
45 H 0.05 0.66 5.78 -51.93 -0.30 0.36 16
46 H 0.05 0.73 5.62 -51.93 -0.29 0.44 16
47 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16
48 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16
49 H 0.05 1.19 7.23 -51.93 -0.38 0.81 16
50 H 0.05 1.39 7.12 -51.93 -0.37 1.02 16
LS Contribution 380.63 15.07 5.74 5.74
Total: -1.00 -32.01 380.63 -10.75 -42.76
By element:
Atomic # 1 Polarization: 10.78 SS G_CDS: -7.64 Total: 3.13 kcal
Atomic # 6 Polarization: 6.04 SS G_CDS: -3.30 Total: 2.74 kcal
Atomic # 7 Polarization: -60.42 SS G_CDS: -0.62 Total: -61.04 kcal
Atomic # 8 Polarization: -9.78 SS G_CDS: 0.09 Total: -9.69 kcal
Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.36 kcal
Total LS contribution 5.74 Total: 5.74 kcal
Total: -32.01 -10.75 -42.76 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001087390484.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 105.175 kcal
(2) G-P(sol) polarization free energy of solvation -32.008 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.167 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.751 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.759 kcal
(6) G-S(sol) free energy of system = (1) + (5) 62.416 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.97 seconds