Wall clock time and date at job start Wed Apr 1 2020 02:49:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50700 * 1
3 3 N 1.30856 * 125.41472 * 2 1
4 4 C 1.33318 * 109.68183 * 179.97438 * 3 2 1
5 5 C 1.50699 * 126.10398 * 180.02562 * 4 3 2
6 6 C 1.36665 * 107.78926 * 0.02562 * 4 3 2
7 7 C 1.46762 * 126.84525 * 179.97438 * 6 4 3
8 8 O 1.21676 * 120.00041 * 256.06638 * 7 6 4
9 9 N 1.34778 * 119.99661 * 76.07485 * 7 6 4
10 10 C 1.48165 * 127.83675 * 355.04322 * 9 7 6
11 11 C 1.54368 * 104.54811 * 140.31346 * 10 9 7
12 12 H 1.09006 * 110.92064 * 263.66477 * 11 10 9
13 13 C 1.54150 * 105.54710 * 23.86522 * 11 10 9
14 14 H 1.08999 * 110.88000 * 240.12874 * 13 11 10
15 15 C 1.48141 * 127.83512 * 175.01126 * 9 7 6
16 16 C 1.53026 * 109.71752 * 116.80289 * 13 11 10
17 17 H 1.09008 * 109.64470 * 180.49849 * 16 13 11
18 18 C 1.53068 * 109.16573 * 300.62357 * 16 13 11
19 19 C 1.55444 * 110.31842 * 58.68926 * 18 16 13
20 20 C 1.53202 * 109.00299 * 141.33445 * 11 10 9
21 21 H 1.09006 * 110.51901 * 67.98555 * 20 11 10
22 22 N 1.47650 * 108.07982 * 189.05438 * 20 11 10
23 23 C 1.36941 * 122.04134 * 239.17206 * 22 20 11
24 24 H 1.08002 * 120.00087 * 359.97438 * 23 22 20
25 25 C 1.38807 * 120.00000 * 179.97438 * 23 22 20
26 26 N 1.31624 * 120.00130 * 0.02562 * 25 23 22
27 27 Si 1.86805 * 120.00334 * 179.97438 * 25 23 22
28 28 H 1.48500 * 109.46698 * 59.99760 * 27 25 23
29 29 H 1.48494 * 109.47301 * 180.02562 * 27 25 23
30 30 H 1.48497 * 109.46750 * 300.00391 * 27 25 23
31 31 C 1.46392 * 116.65949 * 57.89986 * 22 20 11
32 32 N 1.34491 * 125.41872 * 180.23660 * 2 1 3
33 33 H 0.97007 * 126.47514 * 0.04884 * 32 2 1
34 34 H 1.08999 * 109.47601 * 90.02198 * 1 2 3
35 35 H 1.09005 * 109.47188 * 210.01828 * 1 2 3
36 36 H 1.08996 * 109.47651 * 330.02207 * 1 2 3
37 37 H 1.09003 * 109.47494 * 270.00287 * 5 4 3
38 38 H 1.08992 * 109.47279 * 30.00498 * 5 4 3
39 39 H 1.09008 * 109.46989 * 150.00715 * 5 4 3
40 40 H 1.08997 * 110.41693 * 21.54597 * 10 9 7
41 41 H 1.08999 * 110.42492 * 259.07891 * 10 9 7
42 42 H 1.08991 * 110.40045 * 338.26307 * 15 9 7
43 43 H 1.08997 * 110.40143 * 100.56322 * 15 9 7
44 44 H 1.09004 * 109.38560 * 179.43924 * 18 16 13
45 45 H 1.09002 * 109.38327 * 299.11093 * 18 16 13
46 46 H 1.08994 * 110.57991 * 241.84306 * 19 18 16
47 47 H 1.08991 * 109.62008 * 121.11442 * 19 18 16
48 48 H 0.96998 * 119.99918 * 179.97438 * 26 25 23
49 49 H 1.08994 * 110.38454 * 241.50477 * 31 22 20
50 50 H 1.09001 * 109.90850 * 120.02024 * 31 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2653 1.0664 0.0000
4 6 3.5485 0.7050 0.0006
5 6 4.7334 1.6361 0.0013
6 6 3.5976 -0.6608 0.0004
7 6 4.8029 -1.4982 0.0003
8 8 5.1578 -2.0535 -1.0225
9 7 5.5165 -1.6521 1.1332
10 6 5.3045 -0.9842 2.4387
11 6 5.5683 -2.0872 3.4859
12 1 4.6352 -2.5510 3.8062
13 6 6.4805 -3.1131 2.7847
14 1 6.0050 -4.0931 2.7461
15 6 6.6903 -2.5280 1.3559
16 6 7.8306 -3.1786 3.5021
17 1 8.4778 -3.8979 3.0000
18 6 8.4820 -1.7937 3.4747
19 6 7.5579 -0.7490 4.1609
20 6 6.3108 -1.4756 4.6783
21 1 5.6629 -0.7853 5.2186
22 7 6.7452 -2.5765 5.5612
23 6 6.3463 -2.6599 6.8686
24 1 5.6942 -1.9054 7.2833
25 6 6.7801 -3.7140 7.6607
26 7 7.5752 -4.6331 7.1553
27 14 6.2366 -3.8274 9.4443
28 1 4.7557 -3.9182 9.5056
29 1 6.8335 -5.0357 10.0678
30 1 6.6890 -2.6178 10.1774
31 6 7.6056 -3.5983 4.9622
32 7 2.2864 -1.0960 -0.0045
33 1 1.9850 -2.0180 -0.0090
34 1 -0.3634 -0.0004 -1.0276
35 1 -0.3634 -0.8899 0.5141
36 1 -0.3634 0.8901 0.5135
37 1 5.0196 1.8609 -1.0262
38 1 4.4690 2.5602 0.5152
39 1 5.5688 1.1607 0.5154
40 1 4.2798 -0.6214 2.5182
41 1 6.0104 -0.1633 2.5650
42 1 6.7092 -3.3321 0.6204
43 1 7.6118 -1.9480 1.3074
44 1 9.4397 -1.8341 3.9936
45 1 8.6453 -1.4911 2.4403
46 1 7.2599 0.0233 3.4519
47 1 8.0835 -0.2893 4.9978
48 1 7.8786 -5.3695 7.7090
49 1 7.1195 -4.5732 4.9992
50 1 8.5585 -3.6370 5.4900
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001087390484.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 02:49:06
Heat of formation + Delta-G solvation = 42.978137 kcal
Electronic energy + Delta-G solvation = -31845.785232 eV
Core-core repulsion = 27873.832265 eV
Total energy + Delta-G solvation = -3971.952968 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 344.195 amu
Computer time = 1.03 seconds
Orbital eigenvalues (eV)
-43.30484 -42.06359 -40.00630 -37.27220 -35.04001 -34.46838 -33.37809 -33.09563
-31.74572 -31.42215 -30.10982 -29.08125 -27.59928 -27.00338 -25.20632 -23.68231
-22.74603 -22.41046 -22.14147 -21.92739 -20.44606 -19.30636 -18.73326 -18.02058
-17.68507 -17.19095 -16.78999 -16.68609 -16.35803 -16.17442 -15.78472 -15.49896
-14.86549 -14.73039 -14.26230 -14.13213 -14.08261 -13.99154 -13.78637 -13.65124
-13.47056 -13.34481 -13.25172 -13.05426 -12.98881 -12.87687 -12.81137 -12.55303
-12.36969 -12.19360 -12.09862 -11.91775 -11.84115 -11.58617 -11.17839 -11.04715
-10.99640 -10.84296 -10.68658 -10.46460 -9.83490 -9.35885 -8.81629 -7.71810
-5.11185 0.57821 1.05213 1.47335 1.48696 1.54938 1.68931 1.92174
2.30371 2.52666 3.25981 3.37735 3.41055 3.49585 3.69398 3.79193
3.86263 3.96936 4.09899 4.16051 4.17816 4.22804 4.32170 4.38201
4.48885 4.57600 4.62023 4.66265 4.72998 4.74865 4.75022 4.78357
4.81792 4.90080 4.94726 4.99336 5.02488 5.08028 5.10808 5.12580
5.27269 5.39521 5.42906 5.51742 5.55407 5.56649 5.65082 5.82804
5.95924 6.27856 6.31379 6.34458 6.82051 6.92048 7.22639 7.95113
8.41046 9.28722
Molecular weight = 344.20amu
Principal moments of inertia in cm(-1)
A = 0.014791 B = 0.003201 C = 0.002918
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1892.547133 B = 8744.934989 C = 9592.416983
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.070 4.070
2 C 0.236 3.764
3 N -0.518 5.518
4 C 0.055 3.945
5 C -0.076 4.076
6 C -0.094 4.094
7 C 0.619 3.381
8 O -0.572 6.572
9 N -0.600 5.600
10 C 0.114 3.886
11 C -0.101 4.101
12 H 0.057 0.943
13 C -0.072 4.072
14 H 0.061 0.939
15 C 0.111 3.889
16 C -0.101 4.101
17 H 0.078 0.922
18 C -0.101 4.101
19 C -0.128 4.128
20 C 0.174 3.826
21 H 0.067 0.933
22 N -0.614 5.614
23 C -0.243 4.243
24 H 0.079 0.921
25 C -0.065 4.065
26 N -0.950 5.950
27 Si 0.968 3.032
28 H -0.281 1.281
29 H -0.299 1.299
30 H -0.279 1.279
31 C 0.218 3.782
32 N -0.538 5.538
33 H 0.433 0.567
34 H 0.099 0.901
35 H 0.099 0.901
36 H 0.099 0.901
37 H 0.077 0.923
38 H 0.088 0.912
39 H 0.075 0.925
40 H 0.078 0.922
41 H 0.107 0.893
42 H 0.073 0.927
43 H 0.103 0.897
44 H 0.048 0.952
45 H 0.084 0.916
46 H 0.094 0.906
47 H 0.048 0.952
48 H 0.242 0.758
49 H 0.003 0.997
50 H 0.014 0.986
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.000 10.303 -14.745 20.114
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.128 4.128
2 C -0.028 4.028
3 N -0.240 5.240
4 C -0.078 4.078
5 C -0.133 4.133
6 C -0.211 4.211
7 C 0.406 3.594
8 O -0.451 6.451
9 N -0.331 5.331
10 C -0.009 4.009
11 C -0.122 4.122
12 H 0.076 0.924
13 C -0.092 4.092
14 H 0.079 0.921
15 C -0.010 4.010
16 C -0.121 4.121
17 H 0.096 0.904
18 C -0.139 4.139
19 C -0.167 4.167
20 C 0.067 3.933
21 H 0.086 0.914
22 N -0.337 5.337
23 C -0.373 4.373
24 H 0.096 0.904
25 C -0.257 4.257
26 N -0.600 5.600
27 Si 0.797 3.203
28 H -0.207 1.207
29 H -0.226 1.226
30 H -0.205 1.205
31 C 0.093 3.907
32 N -0.143 5.143
33 H 0.273 0.727
34 H 0.118 0.882
35 H 0.117 0.883
36 H 0.118 0.882
37 H 0.096 0.904
38 H 0.107 0.893
39 H 0.094 0.906
40 H 0.096 0.904
41 H 0.125 0.875
42 H 0.092 0.908
43 H 0.121 0.879
44 H 0.067 0.933
45 H 0.102 0.898
46 H 0.112 0.888
47 H 0.067 0.933
48 H 0.051 0.949
49 H 0.022 0.978
50 H 0.033 0.967
Dipole moment (debyes) X Y Z Total
from point charges -9.067 10.700 -15.246 20.716
hybrid contribution 0.021 -2.195 1.412 2.610
sum -9.047 8.505 -13.835 18.590
Atomic orbital electron populations
1.20483 0.81191 1.05848 1.05272 1.24139 0.97249 0.80590 1.00776
1.70016 1.01746 1.29398 1.22799 1.21283 0.94094 0.90042 1.02382
1.20249 0.91898 0.97850 1.03326 1.20339 0.85099 0.95101 1.20567
1.16540 0.81854 0.79230 0.81776 1.90820 1.71554 1.50111 1.32600
1.48874 1.30685 1.43156 1.10366 1.22812 1.02889 0.95539 0.79632
1.22495 0.98267 0.95834 0.95613 0.92429 1.22055 0.96000 0.97931
0.93207 0.92089 1.22951 0.88473 0.93935 0.95686 1.21656 0.95568
0.98273 0.96585 0.90391 1.21876 0.97761 0.93531 1.00692 1.22564
0.96587 0.97621 0.99910 1.20749 0.94181 0.89045 0.89353 0.91443
1.44569 1.56564 1.25101 1.07499 1.19642 1.23399 1.06744 0.87493
0.90355 1.25523 1.00673 0.97694 1.01858 1.70298 1.39446 1.14766
1.35445 0.85307 0.77613 0.76576 0.80768 1.20707 1.22593 1.20493
1.20448 0.92695 0.89487 0.88079 1.43022 1.04467 1.11130 1.55668
0.72677 0.88231 0.88279 0.88182 0.90404 0.89323 0.90599 0.90380
0.87497 0.90825 0.87938 0.93277 0.89762 0.88815 0.93317 0.94860
0.97845 0.96738
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -0.66 10.51 71.24 0.75 0.09 16
2 C 0.24 4.52 8.12 138.20 1.12 5.64 16
3 N -0.52 -12.63 11.20 -175.58 -1.97 -14.60 16
4 C 0.06 1.35 7.15 41.96 0.30 1.65 16
5 C -0.08 -1.46 10.24 71.24 0.73 -0.73 16
6 C -0.09 -2.37 5.80 40.01 0.23 -2.14 16
7 C 0.62 17.57 7.39 86.47 0.64 18.21 16
8 O -0.57 -20.07 17.41 -4.27 -0.07 -20.14 16
9 N -0.60 -15.30 3.32 -809.72 -2.69 -17.98 16
10 C 0.11 2.68 6.19 86.52 0.54 3.21 16
11 C -0.10 -3.08 3.29 -9.87 -0.03 -3.11 16
12 H 0.06 1.99 8.14 -2.38 -0.02 1.97 16
13 C -0.07 -2.22 3.21 -9.42 -0.03 -2.25 16
14 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16
15 C 0.11 2.85 6.35 87.04 0.55 3.40 16
16 C -0.10 -3.44 2.89 -10.57 -0.03 -3.47 16
17 H 0.08 2.46 8.14 -2.38 -0.02 2.44 16
18 C -0.10 -2.92 5.36 31.46 0.17 -2.75 16
19 C -0.13 -3.70 5.73 31.55 0.18 -3.52 16
20 C 0.17 6.09 3.17 44.95 0.14 6.23 16
21 H 0.07 2.35 7.99 -2.38 -0.02 2.33 16
22 N -0.61 -28.80 2.85 -673.45 -1.92 -30.72 16
23 C -0.24 -12.89 9.98 84.03 0.84 -12.05 16
24 H 0.08 3.97 7.79 -2.91 -0.02 3.95 16
25 C -0.06 -3.59 5.46 84.86 0.46 -3.12 16
26 N -0.95 -55.70 9.66 21.65 0.21 -55.49 16
27 Si 0.97 44.98 29.55 68.60 2.03 47.01 16
28 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16
29 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16
30 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16
31 C 0.22 10.26 4.31 86.60 0.37 10.63 16
32 N -0.54 -10.80 6.19 -176.12 -1.09 -11.89 16
33 H 0.43 6.56 8.96 -92.70 -0.83 5.73 16
34 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16
35 H 0.10 0.52 8.14 -2.38 -0.02 0.50 16
36 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16
37 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16
38 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16
39 H 0.08 1.35 7.91 -2.38 -0.02 1.33 16
40 H 0.08 1.81 7.39 -2.39 -0.02 1.80 16
41 H 0.11 2.15 5.16 -2.39 -0.01 2.14 16
42 H 0.07 1.98 7.93 -2.39 -0.02 1.96 16
43 H 0.10 2.29 5.35 -2.39 -0.01 2.28 16
44 H 0.05 1.53 8.14 -2.38 -0.02 1.51 16
45 H 0.08 1.88 5.78 -2.39 -0.01 1.87 16
46 H 0.09 2.02 5.62 -2.39 -0.01 2.01 16
47 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16
48 H 0.24 14.02 8.31 -92.71 -0.77 13.25 16
49 H 0.00 0.19 7.23 -2.39 -0.02 0.17 16
50 H 0.01 0.79 7.12 -2.39 -0.02 0.77 16
Total: -1.00 -72.71 380.63 1.57 -71.14
By element:
Atomic # 1 Polarization: 16.62 SS G_CDS: 0.14 Total: 16.77 kcal
Atomic # 6 Polarization: 8.98 SS G_CDS: 6.93 Total: 15.91 kcal
Atomic # 7 Polarization: -123.23 SS G_CDS: -7.45 Total: -130.68 kcal
Atomic # 8 Polarization: -20.07 SS G_CDS: -0.07 Total: -20.14 kcal
Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal
Total: -72.71 1.57 -71.14 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001087390484.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 114.117 kcal
(2) G-P(sol) polarization free energy of solvation -72.714 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.403 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.575 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.139 kcal
(6) G-S(sol) free energy of system = (1) + (5) 42.978 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.03 seconds