Wall clock time and date at job start Wed Apr 1 2020 03:44:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50698 * 109.47102 * 2 1 4 4 N 1.33316 * 126.10949 * 270.00616 * 3 2 1 5 5 C 1.30857 * 109.69016 * 179.97438 * 4 3 2 6 6 N 1.34499 * 109.15792 * 359.75748 * 5 4 3 7 7 H 0.97007 * 126.46908 * 180.25038 * 6 5 4 8 8 C 1.36665 * 126.10631 * 89.99799 * 3 2 1 9 9 C 1.46766 * 126.84636 * 359.96561 * 8 3 2 10 10 O 1.21678 * 119.99786 * 256.32653 * 9 8 3 11 11 N 1.34779 * 119.99948 * 76.32183 * 9 8 3 12 12 C 1.48147 * 127.83670 * 175.04551 * 11 9 8 13 13 C 1.54384 * 104.58170 * 140.41038 * 12 11 9 14 14 H 1.09000 * 110.81653 * 263.73735 * 13 12 11 15 15 C 1.55261 * 104.68779 * 23.96366 * 13 12 11 16 16 H 1.09000 * 110.86012 * 239.11252 * 15 13 12 17 17 C 1.48152 * 127.83229 * 355.04921 * 11 9 8 18 18 C 1.53285 * 108.76276 * 116.87416 * 15 13 12 19 19 H 1.08994 * 110.49326 * 181.90140 * 18 15 13 20 20 C 1.53320 * 109.20409 * 60.16977 * 18 15 13 21 21 C 1.52930 * 109.59887 * 299.11022 * 20 18 15 22 22 C 1.52978 * 109.07149 * 141.57104 * 13 12 11 23 23 H 1.09008 * 109.63332 * 66.11437 * 22 13 12 24 24 C 1.53606 * 109.29987 * 305.30612 * 22 13 12 25 25 N 1.47637 * 106.73201 * 300.59528 * 24 22 13 26 26 C 1.36935 * 122.06087 * 179.84287 * 25 24 22 27 27 H 1.08000 * 119.99799 * 179.71148 * 26 25 24 28 28 C 1.38814 * 120.00028 * 359.97438 * 26 25 24 29 29 N 1.31614 * 119.99906 * 359.72302 * 28 26 25 30 30 Si 1.86800 * 119.99792 * 179.72271 * 28 26 25 31 31 H 1.48500 * 109.47465 * 0.02562 * 30 28 26 32 32 H 1.48501 * 109.46835 * 120.00166 * 30 28 26 33 33 H 1.48499 * 109.47265 * 239.99958 * 30 28 26 34 34 H 1.09008 * 109.47098 * 299.99825 * 1 2 3 35 35 H 1.08993 * 109.47421 * 60.00061 * 1 2 3 36 36 H 1.08999 * 109.47135 * 180.02562 * 1 2 3 37 37 H 1.08998 * 109.47031 * 239.99986 * 2 1 3 38 38 H 1.08998 * 109.46732 * 120.00045 * 2 1 3 39 39 H 1.07994 * 125.41922 * 179.97438 * 5 4 3 40 40 H 1.08995 * 110.41521 * 21.63307 * 12 11 9 41 41 H 1.08999 * 110.41605 * 259.18688 * 12 11 9 42 42 H 1.08996 * 110.40689 * 338.29120 * 17 11 9 43 43 H 1.08997 * 110.40686 * 100.60877 * 17 11 9 44 44 H 1.08999 * 109.45293 * 59.14896 * 20 18 15 45 45 H 1.09005 * 109.45181 * 179.07204 * 20 18 15 46 46 H 1.09001 * 109.38396 * 120.81430 * 21 20 18 47 47 H 1.09000 * 109.38017 * 240.48824 * 21 20 18 48 48 H 1.09000 * 110.12385 * 181.22270 * 24 22 13 49 49 H 1.09003 * 109.87118 * 59.83568 * 24 22 13 50 50 H 0.97004 * 120.00078 * 179.97438 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2941 2.1616 -1.0770 5 6 2.7120 3.3452 -0.7072 6 7 2.7282 3.4076 0.6363 7 1 2.9924 4.1699 1.1749 8 6 2.3007 2.1801 1.1042 9 6 2.1566 1.7747 2.5073 10 8 1.2111 2.1729 3.1616 11 7 3.0715 0.9612 3.0711 12 6 3.1532 0.5277 4.4854 13 6 3.5679 -0.9577 4.4132 14 1 2.6950 -1.6072 4.4793 15 6 4.2788 -1.1017 3.0404 16 1 3.7742 -1.8403 2.4176 17 6 4.2235 0.2979 2.4171 18 6 5.7407 -1.4948 3.2811 19 1 6.2761 -1.5710 2.3348 20 6 5.7866 -2.8303 4.0328 21 6 5.0867 -2.6825 5.3845 22 6 4.5531 -1.2572 5.5445 23 1 4.0475 -1.1610 6.5055 24 6 5.7306 -0.2740 5.4658 25 7 6.3561 -0.4649 4.1422 26 6 7.4432 0.2640 3.7400 27 1 7.8772 0.0936 2.7658 28 6 7.9908 1.2182 4.5865 29 7 7.4617 1.4261 5.7735 30 14 9.4787 2.2072 4.0408 31 1 9.8786 1.7864 2.6740 32 1 9.1367 3.6523 4.0331 33 1 10.6030 1.9696 4.9813 34 1 -0.3634 0.5138 0.8901 35 1 -0.3634 0.5138 -0.8899 36 1 -0.3633 -1.0277 0.0005 37 1 1.8933 -0.5138 -0.8900 38 1 1.8933 -0.5138 0.8900 39 1 2.9953 4.1457 -1.3744 40 1 2.1824 0.6282 4.9706 41 1 3.9071 1.1074 5.0179 42 1 4.0594 0.2241 1.3421 43 1 5.1439 0.8440 2.6237 44 1 5.2810 -3.5958 3.4441 45 1 6.8248 -3.1220 4.1917 46 1 4.2576 -3.3878 5.4416 47 1 5.7961 -2.8951 6.1843 48 1 6.4523 -0.4894 6.2537 49 1 5.3663 0.7489 5.5620 50 1 7.8446 2.0926 6.3653 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087409216.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:44:14 Heat of formation + Delta-G solvation = 57.194345 kcal Electronic energy + Delta-G solvation = -32648.022813 eV Core-core repulsion = 28676.686307 eV Total energy + Delta-G solvation = -3971.336506 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.18711 -40.53735 -38.53398 -35.61519 -34.31221 -33.43776 -32.07514 -31.69502 -30.55112 -29.81932 -28.90082 -27.04266 -25.40229 -24.76982 -23.60583 -22.31869 -21.96467 -21.13158 -20.80735 -20.52746 -19.13490 -18.02857 -17.32971 -16.61814 -15.94870 -15.90351 -15.28319 -15.26372 -15.01619 -14.77357 -14.35059 -14.17327 -14.04310 -13.85199 -13.49490 -13.19865 -12.80416 -12.43209 -12.42039 -12.24591 -12.04011 -11.87420 -11.54901 -11.49637 -11.28459 -11.16548 -11.03254 -10.97567 -10.72744 -10.64090 -10.51945 -10.37818 -10.19681 -10.01575 -9.88565 -9.81495 -9.73204 -9.31020 -9.23305 -8.57762 -8.46397 -8.28440 -6.92347 -5.74435 -3.11456 1.71702 2.35760 2.92855 3.10915 3.32157 3.39376 3.41115 3.51635 4.39273 4.41296 4.64553 4.95343 5.00445 5.01275 5.08007 5.15532 5.39282 5.40450 5.42656 5.46963 5.59135 5.61818 5.67663 5.72825 5.74996 5.85837 5.88971 5.93320 5.96705 5.97640 6.07555 6.11391 6.22294 6.23852 6.30998 6.33805 6.38784 6.45947 6.57252 6.58535 6.67893 6.69327 6.76503 6.94594 6.97943 7.22014 7.58041 7.62530 7.78011 7.84622 7.91893 8.23884 8.25088 9.17935 9.78800 10.32792 11.30248 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.010814 B = 0.004617 C = 0.003812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2588.531222 B = 6062.434184 C = 7344.340751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.045 4.045 3 C 0.057 3.943 4 N -0.491 5.491 5 C 0.200 3.800 6 N -0.542 5.542 7 H 0.425 0.575 8 C -0.057 4.057 9 C 0.609 3.391 10 O -0.544 6.544 11 N -0.598 5.598 12 C 0.104 3.896 13 C -0.081 4.081 14 H 0.069 0.931 15 C -0.108 4.108 16 H 0.071 0.929 17 C 0.107 3.893 18 C 0.178 3.822 19 H 0.068 0.932 20 C -0.127 4.127 21 C -0.100 4.100 22 C -0.113 4.113 23 H 0.065 0.935 24 C 0.198 3.802 25 N -0.597 5.597 26 C -0.235 4.235 27 H 0.075 0.925 28 C -0.005 4.005 29 N -0.920 5.920 30 Si 0.904 3.096 31 H -0.281 1.281 32 H -0.293 1.293 33 H -0.291 1.291 34 H 0.055 0.945 35 H 0.056 0.944 36 H 0.059 0.941 37 H 0.081 0.919 38 H 0.075 0.925 39 H 0.213 0.787 40 H 0.071 0.929 41 H 0.097 0.903 42 H 0.064 0.936 43 H 0.106 0.894 44 H 0.048 0.952 45 H 0.060 0.940 46 H 0.045 0.955 47 H 0.056 0.944 48 H 0.050 0.950 49 H 0.056 0.944 50 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.079 -2.859 -7.672 12.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.083 4.083 3 C -0.076 4.076 4 N -0.211 5.211 5 C -0.083 4.083 6 N -0.145 5.145 7 H 0.264 0.736 8 C -0.175 4.175 9 C 0.395 3.605 10 O -0.421 6.421 11 N -0.330 5.330 12 C -0.018 4.018 13 C -0.100 4.100 14 H 0.087 0.913 15 C -0.130 4.130 16 H 0.089 0.911 17 C -0.015 4.015 18 C 0.069 3.931 19 H 0.086 0.914 20 C -0.167 4.167 21 C -0.137 4.137 22 C -0.132 4.132 23 H 0.084 0.916 24 C 0.074 3.926 25 N -0.321 5.321 26 C -0.364 4.364 27 H 0.093 0.907 28 C -0.201 4.201 29 N -0.568 5.568 30 Si 0.735 3.265 31 H -0.206 1.206 32 H -0.220 1.220 33 H -0.218 1.218 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.100 0.900 38 H 0.094 0.906 39 H 0.229 0.771 40 H 0.090 0.910 41 H 0.115 0.885 42 H 0.083 0.917 43 H 0.124 0.876 44 H 0.066 0.934 45 H 0.078 0.922 46 H 0.064 0.936 47 H 0.074 0.926 48 H 0.068 0.932 49 H 0.074 0.926 50 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -9.639 -2.693 -8.057 12.848 hybrid contribution 1.182 1.374 0.818 1.988 sum -8.457 -1.319 -7.239 11.210 Atomic orbital electron populations 1.21703 0.94533 1.01664 1.02243 1.19922 0.96055 0.89194 1.03168 1.20796 1.03022 0.96982 0.86797 1.69969 1.18074 1.02662 1.30372 1.24981 1.03424 0.98100 0.81836 1.43156 1.49926 1.12850 1.08603 0.73627 1.20626 1.13461 0.88365 0.95043 1.16381 0.81589 0.78857 0.83712 1.90819 1.31127 1.56866 1.63291 1.48878 1.26639 1.45863 1.11594 1.22777 1.02020 0.95471 0.81508 1.22122 0.97341 0.94859 0.95680 0.91305 1.22651 0.99139 0.95723 0.95467 0.91053 1.22466 0.89530 0.93392 0.96082 1.20553 0.90230 0.88532 0.93819 0.91378 1.22000 1.00187 0.98037 0.96426 1.21327 0.98790 0.95925 0.97699 1.21808 0.97828 0.97041 0.96556 0.91615 1.21256 0.89631 0.94710 0.86980 1.44617 1.33111 1.40649 1.13735 1.19288 1.04235 1.12966 0.99863 0.90706 1.24750 0.99280 0.99686 0.96403 1.70019 1.41838 1.36551 1.08410 0.86161 0.82768 0.79841 0.77679 1.20605 1.22028 1.21830 0.92624 0.92463 0.92212 0.90046 0.90605 0.77061 0.91038 0.88510 0.91738 0.87630 0.93355 0.92154 0.93639 0.92559 0.93162 0.92594 0.93904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 9.89 37.16 0.37 -1.32 16 2 C -0.04 -0.58 6.18 -27.88 -0.17 -0.75 16 3 C 0.06 0.84 5.80 -82.52 -0.48 0.36 16 4 N -0.49 -7.01 11.20 -10.65 -0.12 -7.13 16 5 C 0.20 2.27 13.01 -90.57 -1.18 1.09 16 6 N -0.54 -6.74 6.19 -10.79 -0.07 -6.81 16 7 H 0.43 4.28 8.96 -40.82 -0.37 3.92 16 8 C -0.06 -0.88 6.03 -82.14 -0.50 -1.37 16 9 C 0.61 10.69 7.39 -12.81 -0.09 10.59 16 10 O -0.54 -11.04 17.36 5.21 0.09 -10.95 16 11 N -0.60 -10.18 3.32 -171.47 -0.57 -10.75 16 12 C 0.10 1.78 6.37 -2.41 -0.02 1.76 16 13 C -0.08 -1.26 3.15 -88.71 -0.28 -1.54 16 14 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 15 C -0.11 -1.69 3.19 -89.11 -0.28 -1.98 16 16 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 17 C 0.11 1.79 6.20 -2.97 -0.02 1.77 16 18 C 0.18 3.13 3.01 -66.98 -0.20 2.93 16 19 H 0.07 1.20 7.99 -51.93 -0.42 0.78 16 20 C -0.13 -2.02 5.86 -26.60 -0.16 -2.18 16 21 C -0.10 -1.56 5.65 -26.75 -0.15 -1.71 16 22 C -0.11 -1.91 2.87 -90.30 -0.26 -2.17 16 23 H 0.07 1.05 8.14 -51.92 -0.42 0.62 16 24 C 0.20 4.25 4.01 -3.10 -0.01 4.24 16 25 N -0.60 -12.91 1.96 -163.15 -0.32 -13.23 16 26 C -0.23 -5.78 9.23 -15.06 -0.14 -5.92 16 27 H 0.08 1.82 7.79 -52.49 -0.41 1.41 16 28 C -0.01 -0.13 5.47 -17.43 -0.10 -0.23 16 29 N -0.92 -24.82 9.77 55.49 0.54 -24.28 16 30 Si 0.90 20.90 29.55 -169.99 -5.02 15.88 16 31 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 32 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 33 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 34 H 0.05 0.74 8.14 -51.92 -0.42 0.32 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 38 H 0.08 0.98 7.69 -51.93 -0.40 0.58 16 39 H 0.21 1.40 8.06 -52.49 -0.42 0.98 16 40 H 0.07 1.20 7.85 -51.93 -0.41 0.79 16 41 H 0.10 1.89 5.31 -51.93 -0.28 1.62 16 42 H 0.06 1.01 6.65 -51.93 -0.35 0.66 16 43 H 0.11 2.13 6.30 -51.93 -0.33 1.80 16 44 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 46 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 48 H 0.05 1.25 7.24 -51.93 -0.38 0.88 16 49 H 0.06 1.34 4.88 -51.93 -0.25 1.09 16 50 H 0.25 6.70 8.31 -40.82 -0.34 6.36 16 LS Contribution 380.59 15.07 5.74 5.74 Total: -1.00 -30.31 380.59 -11.18 -41.49 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: -7.78 Total: 6.47 kcal Atomic # 6 Polarization: 7.24 SS G_CDS: -3.66 Total: 3.58 kcal Atomic # 7 Polarization: -61.67 SS G_CDS: -0.53 Total: -62.20 kcal Atomic # 8 Polarization: -11.04 SS G_CDS: 0.09 Total: -10.95 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -30.31 -11.18 -41.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087409216.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.681 kcal (2) G-P(sol) polarization free energy of solvation -30.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds